3-10088408-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10088408
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10088408
    reference: chr 3
allele count: 756
allele frequency: 7.94367973100767e-3
allele num: 95170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1278+1G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.362+1G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1278+1G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1278+1G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.297+1G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1278+1G>T
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: splice donor
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 2.25e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10523
  bin: 3.25e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4089
  bin: 3.75e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 1.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 4.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15733
  bin: 2.75e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 6314
  bin: 2.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 2694
  bin: 9.75e1
  variant carriers: 242
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 7.5e0
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 5.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 4333
  bin: 6.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 2365
  bin: 2.75e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 7.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 3.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 8.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 1.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 3273
  bin: 2.5e0
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 4.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 1.25e1
  variant carriers: 51
hgvs: c.1278+1G>T
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

3-10088409-TAAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10088409
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10088406
    reference: chr 3
allele count: 3995
allele frequency: 3.454388240380458e-2
allele num: 115650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1278+3_1278+5delAAG
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1278+3_1278+5delAAG
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.362+3_362+5delAAG
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1278+3_1278+5delAAG
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.297+3_297+5delAAG
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1278+3_1278+5delAAG
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 10975
  bin: 3.25e1
  variant carriers: 580
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.75e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 6.25e1
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.75e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 1.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 17381
  bin: 2.75e1
  variant carriers: 485
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.25e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 9.75e1
  variant carriers: 253
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 3.75e1
  variant carriers: 490
genotype depth: GenotypeDepth
  all individuals: 6464
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 7296
  bin: 2.25e1
  variant carriers: 307
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 4.75e1
  variant carriers: 319
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 4.25e1
  variant carriers: 399
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 176
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 3.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 4.25e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.75e1
  variant carriers: 106
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.5e0
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 6998
  bin: 2.25e1
  variant carriers: 96
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 7.25e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 22901
  bin: 6.25e1
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 8.25e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.5e0
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.25e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 4.75e1
  variant carriers: 97
hgvs: c.1278+3_1278+5delAAG
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: TAAG
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS

3-10088410-AAGTG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10088410
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10088406
    reference: chr 3
allele count: 4
allele frequency: 3.986525543662421e-5
allele num: 100338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1278+4_1278+7delAGTG
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.297+4_297+7delAGTG
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.362+4_362+7delAGTG
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1278+4_1278+7delAGTG
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1278+4_1278+7delAGTG
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1278+4_1278+7delAGTG
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16254
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9520
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7512
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4901
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1278+4_1278+7delAGTG
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: AAGTG
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

3-10088413-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10088413
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10088413
    reference: chr 3
allele count: 1
allele frequency: 8.891418003343173e-6
allele num: 112468
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.362+6T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.297+6T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1278+6T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1278+6T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1278+6T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1278+6T>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7081
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2548
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3315
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9037
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20165
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3747
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1278+6T>C
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP

3-10088417-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10088417
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10088417
    reference: chr 3
allele count: 1
allele frequency: 8.718851901581599e-6
allele num: 114694
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1278+10A>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1278+10A>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1278+10A>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.297+10A>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1278+10A>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.362+10A>T
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7083
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3790
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4474
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3811
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9904
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS

3-10088419-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10088419
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10088419
    reference: chr 3
allele count: 1
allele frequency: 8.762705923589205e-6
allele num: 114120
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1278+12A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.362+12A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.297+12A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1278+12A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1278+12A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1278+12A>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13480
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5022
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17207
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4112
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

3-10088420-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10088420
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10088420
    reference: chr 3
allele count: 1
allele frequency: 8.785030308354564e-6
allele num: 113830
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1278+13G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1278+13G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.297+13G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1278+13G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.362+13G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1278+13G>T
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 12906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10211
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4878
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3780
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16243
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10327
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

3-10088422-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10088422
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10088422
    reference: chr 3
allele count: 3549
allele frequency: 3.577476714648603e-2
allele num: 99204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1278+15C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.297+15C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1278+15C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1278+15C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.362+15C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1278+15C>T
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11272
  bin: 2.75e1
  variant carriers: 579
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.75e1
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.75e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 4.25e1
  variant carriers: 249
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 3.75e1
  variant carriers: 343
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 6508
  bin: 3.25e1
  variant carriers: 484
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 2.25e1
  variant carriers: 629
genotype depth: GenotypeDepth
  all individuals: 11932
  bin: 1.25e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 12008
  bin: 1.75e1
  variant carriers: 356
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 156
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 9.25e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 3902
  bin: 3.75e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 7.5e0
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 1.75e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 5.25e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 5241
  bin: 3.25e1
  variant carriers: 102
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 4.75e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 11199
  bin: 6.25e1
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 7.25e1
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 4136
  bin: 2.75e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 8.25e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 4.25e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 3685
  bin: 2.5e0
  variant carriers: 68
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

3-10088427-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10088427
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10088427
    reference: chr 3
allele count: 2
allele frequency: 1.803784339544364e-5
allele num: 110878
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1278+20G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1278+20G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.297+20G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.362+20G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1278+20G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1278+20G>T
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13023
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3362
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4667
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

3-10088428-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10088428
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10088428
    reference: chr 3
allele count: 2
allele frequency: 1.80635838150289e-5
allele num: 110720
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.297+21A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1278+21A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1278+21A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.362+21A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1278+21A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1278+21A>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9654
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14405
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6712
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11521
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5269
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3091
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD

3-10088439-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10088439
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10088439
    reference: chr 3
allele count: 5
allele frequency: 4.634779384501297e-5
allele num: 107880
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1278+32A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1278+32A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1278+32A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.362+32A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.297+32A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1278+32A>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14144
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13935
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9309
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6947
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9117
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11012
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3267
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/3-10088443-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10088443
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10088443
    reference: chr 3
allele count: 17867
allele frequency: 2.544866681859617e-1
allele num: 70208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.362+36C>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1278+36C>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1278+36C>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1278+36C>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.297+36C>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1278+36C>A
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 7.5e0
  variant carriers: 284
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 4.75e1
  variant carriers: 366
genotype depth: GenotypeDepth
  all individuals: 15045
  bin: 1.75e1
  variant carriers: 4280
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 3.25e1
  variant carriers: 1410
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12701
  bin: 1.25e1
  variant carriers: 1975
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 263
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 6639
  bin: 2.75e1
  variant carriers: 3040
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.75e1
  variant carriers: 820
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 9.75e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.25e1
  variant carriers: 526
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 9689
  bin: 2.25e1
  variant carriers: 4801
genotype quality: GenotypeQuality
  all individuals: 2777
  bin: 6.25e1
  variant carriers: 727
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 3.25e1
  variant carriers: 194
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 6.75e1
  variant carriers: 774
genotype quality: GenotypeQuality
  all individuals: 11422
  bin: 9.75e1
  variant carriers: 10577
genotype quality: GenotypeQuality
  all individuals: 5693
  bin: 2.25e1
  variant carriers: 136
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 8.75e1
  variant carriers: 547
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 5.75e1
  variant carriers: 359
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 5.25e1
  variant carriers: 456
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 7.25e1
  variant carriers: 584
genotype quality: GenotypeQuality
  all individuals: 3468
  bin: 7.5e0
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 3.75e1
  variant carriers: 234
genotype quality: GenotypeQuality
  all individuals: 16479
  bin: 2.5e0
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 2313
  bin: 2.75e1
  variant carriers: 123
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

3-10088444-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10088444
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10088444
    reference: chr 3
allele count: 17866
allele frequency: 2.58015134885333e-1
allele num: 69244
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1278+37A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1278+37A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.297+37A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1278+37A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.362+37A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1278+37A>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 12872
  bin: 1.25e1
  variant carriers: 2072
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 3.75e1
  variant carriers: 803
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 7.5e0
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 9593
  bin: 2.25e1
  variant carriers: 4756
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 4.25e1
  variant carriers: 527
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.25e1
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 3.25e1
  variant carriers: 1361
genotype depth: GenotypeDepth
  all individuals: 6576
  bin: 2.75e1
  variant carriers: 3008
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 15137
  bin: 1.75e1
  variant carriers: 4379
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 5.75e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.75e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.75e1
  variant carriers: 336
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 3206
  bin: 7.5e0
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 4.25e1
  variant carriers: 198
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 8.75e1
  variant carriers: 546
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 960
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 1.25e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 3.75e1
  variant carriers: 233
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 1.75e1
  variant carriers: 150
genotype quality: GenotypeQuality
  all individuals: 2559
  bin: 6.25e1
  variant carriers: 726
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 2.75e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 4.75e1
  variant carriers: 385
genotype quality: GenotypeQuality
  all individuals: 17077
  bin: 2.5e0
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 11428
  bin: 9.75e1
  variant carriers: 10578
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 5.75e1
  variant carriers: 361
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

3-10088447-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10088447
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10088447
    reference: chr 3
allele count: 1
allele frequency: 9.636882275846118e-6
allele num: 103768
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.362+40A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.297+40A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1278+40A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1278+40A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1278+40A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1278+40A>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14709
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3748
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7730
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2807
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6740
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

3-10088448-AGCTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10088448
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10088444
    reference: chr 3
allele count: 1
allele frequency: 9.699885541350612e-6
allele num: 103094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1278+42_1278+45delGCTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1278+42_1278+45delGCTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.362+42_362+45delGCTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1278+42_1278+45delGCTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1278+42_1278+45delGCTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.297+42_297+45delGCTT
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14888
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7074
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6509
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4638
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3123
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7799
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4154
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2929
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: AGCTT
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

3-10088453-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10088453
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10088453
    reference: chr 3
allele count: 1
allele frequency: 9.794511155948206e-6
allele num: 102098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1278+46T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.362+46T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1278+46T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.297+46T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1278+46T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1278+46T>A
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15984
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14542
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4594
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2962
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10046
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6978
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

3-10088458-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10088458
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10088458
    reference: chr 3
allele count: 2
allele frequency: 1.980433318810155e-5
allele num: 100988
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1278+51C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.362+51C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.297+51C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1278+51C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1278+51C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1278+51C>T
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15735
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14266
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3000
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5314
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2524
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3123
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4587
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7776
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2986
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

3-10089553-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089553
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089553
    reference: chr 3
allele count: 1
allele frequency: 1.797332758186851e-5
allele num: 55638
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1279-48A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1279-48A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1279-48A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.363-48A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1279-48A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.298-48A>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39184
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31112
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14907
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-10089554-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089554
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089554
    reference: chr 3
allele count: 2
allele frequency: 3.314660744472803e-5
allele num: 60338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1279-47A>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1279-47A>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1279-47A>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1279-47A>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.298-47A>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.363-47A>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38662
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28858
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15733
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

3-10089556-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089556
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089556
    reference: chr 3
allele count: 5
allele frequency: 4.122963256151461e-5
allele num: 121272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1279-45T>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1279-45T>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.363-45T>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.298-45T>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1279-45T>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1279-45T>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33309
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49924
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

3-10089572-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089572
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089572
    reference: chr 3
allele count: 3
allele frequency: 2.473247704001715e-5
allele num: 121298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1279-29T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1279-29T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1279-29T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.363-29T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.298-29T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1279-29T>A
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33310
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

3-10089576-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089576
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089576
    reference: chr 3
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.298-25C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1279-25C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1279-25C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1279-25C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1279-25C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.363-25C>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33309
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49928
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

3-10089582-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089582
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089582
    reference: chr 3
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.298-19C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1279-19C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1279-19C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1279-19C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1279-19C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.363-19C>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-10089587-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089587
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089587
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1279-14C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.298-14C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1279-14C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1279-14C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1279-14C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.363-14C>T
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33309
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49926
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

3-10089596-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089596
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089596
    reference: chr 3
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1279-5T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1279-5T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1279-5T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1279-5T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.298-5T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.363-5T>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33307
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49930
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
hgvs: c.1279-5T>C
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

3-10089599-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089599
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089599
    reference: chr 3
allele count: 8
allele frequency: 6.591957811470006e-5
allele num: 121360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.298-2A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1279-2A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1279-2A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.363-2A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1279-2A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1279-2A>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33307
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49929
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1279-2A>G
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

3-10089601-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089601
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089601
    reference: chr 3
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1279G>T
  hgvsp: ENSP00000398754.1:p.Val427Phe
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.363G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1279G>T
  hgvsp: ENSP00000373317.1:p.Val427Phe
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1279G>T
  hgvsp: ENSP00000287647.3:p.Val427Phe
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1279G>T
  hgvsp: ENSP00000373318.1:p.Val427Phe
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.298G>T
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val427Phe
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

3-10089603-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089603
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089603
    reference: chr 3
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1281T>C
  hgvsp: ENST00000287647.3:c.1281T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1281T>C
  hgvsp: ENST00000419585.1:c.1281T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.300T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1281T>C
  hgvsp: ENST00000383807.1:c.1281T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1281T>C
  hgvsp: ENST00000383806.1:c.1281T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.365T>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49931
  bin: 9.75e1
  variant carriers: 1
hgvs: c.1281T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

3-10089606-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089606
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089606
    reference: chr 3
allele count: 2
allele frequency: 1.647826516824309e-5
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1284T>C
  hgvsp: ENST00000383806.1:c.1284T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.303T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.368T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1284T>C
  hgvsp: ENST00000419585.1:c.1284T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1284T>C
  hgvsp: ENST00000383807.1:c.1284T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1284T>C
  hgvsp: ENST00000287647.3:c.1284T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33301
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu428Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum

3-10089626-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089626
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089626
    reference: chr 3
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1304T>C
  hgvsp: ENSP00000287647.3:p.Ile435Thr
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1304T>C
  hgvsp: ENSP00000373317.1:p.Ile435Thr
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.323T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.388T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1304T>C
  hgvsp: ENSP00000373318.1:p.Ile435Thr
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1304T>C
  hgvsp: ENSP00000398754.1:p.Ile435Thr
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33300
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49933
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile435Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-10089627-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089627
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089627
    reference: chr 3
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1305T>C
  hgvsp: ENST00000287647.3:c.1305T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1305T>C
  hgvsp: ENST00000383806.1:c.1305T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.324T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1305T>C
  hgvsp: ENST00000419585.1:c.1305T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1305T>C
  hgvsp: ENST00000383807.1:c.1305T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.389T>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33300
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile435Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/3-10089628-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089628
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089628
    reference: chr 3
allele count: 3
allele frequency: 2.471128976458378e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1306C>A
  hgvsp: ENSP00000373318.1:p.Leu436Met
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1306C>A
  hgvsp: ENSP00000287647.3:p.Leu436Met
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.390C>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1306C>A
  hgvsp: ENSP00000398754.1:p.Leu436Met
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.325C>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1306C>A
  hgvsp: ENSP00000373317.1:p.Leu436Met
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33300
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu436Met
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP

3-10089628-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089628
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089628
    reference: chr 3
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1306C>T
  hgvsp: ENST00000383806.1:c.1306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.390C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.325C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1306C>T
  hgvsp: ENST00000287647.3:c.1306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1306C>T
  hgvsp: ENST00000383807.1:c.1306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1306C>T
  hgvsp: ENST00000419585.1:c.1306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33300
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49933
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu436Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

3-10089630-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089630
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089630
    reference: chr 3
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1308G>A
  hgvsp: ENST00000419585.1:c.1308G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.392G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1308G>A
  hgvsp: ENST00000383807.1:c.1308G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1308G>A
  hgvsp: ENST00000383806.1:c.1308G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.327G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1308G>A
  hgvsp: ENST00000287647.3:c.1308G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33300
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu436Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

3-10089633-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089633
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089633
    reference: chr 3
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.395G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.330G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1311G>A
  hgvsp: ENST00000383806.1:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1311G>A
  hgvsp: ENST00000419585.1:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1311G>A
  hgvsp: ENST00000383807.1:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1311G>A
  hgvsp: ENST00000287647.3:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33300
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49934
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser437Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum

3-10089633-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089633
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089633
    reference: chr 3
allele count: 13
allele frequency: 1.07080491581826e-4
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.395G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1311G>T
  hgvsp: ENST00000383807.1:c.1311G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1311G>T
  hgvsp: ENST00000383806.1:c.1311G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.330G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1311G>T
  hgvsp: ENST00000287647.3:c.1311G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1311G>T
  hgvsp: ENST00000419585.1:c.1311G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33300
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49934
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser437Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

3-10089639-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089639
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089639
    reference: chr 3
allele count: 15
allele frequency: 1.235544133636453e-4
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.401T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1317T>A
  hgvsp: ENST00000383807.1:c.1317T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.336T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1317T>A
  hgvsp: ENST00000287647.3:c.1317T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1317T>A
  hgvsp: ENST00000383806.1:c.1317T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1317T>A
  hgvsp: ENST00000419585.1:c.1317T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33297
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala439Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

3-10089640-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089640
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089640
    reference: chr 3
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.337C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1318C>T
  hgvsp: ENSP00000287647.3:p.Gln440Ter
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1318C>T
  hgvsp: ENSP00000373317.1:p.Gln440Ter
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1318C>T
  hgvsp: ENSP00000398754.1:p.Gln440Ter
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1318C>T
  hgvsp: ENSP00000373318.1:p.Gln440Ter
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.402C>T
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33293
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln440Ter
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/3-10089643-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089643
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089643
    reference: chr 3
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1321A>C
  hgvsp: ENSP00000287647.3:p.Ser441Arg
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1321A>C
  hgvsp: ENSP00000398754.1:p.Ser441Arg
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1321A>C
  hgvsp: ENSP00000373318.1:p.Ser441Arg
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1321A>C
  hgvsp: ENSP00000373317.1:p.Ser441Arg
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.340A>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.405A>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33294
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser441Arg
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

3-10089644-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089644
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089644
    reference: chr 3
allele count: 3
allele frequency: 2.471128976458378e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1322G>A
  hgvsp: ENSP00000373318.1:p.Ser441Asn
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.341G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.406G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1322G>A
  hgvsp: ENSP00000398754.1:p.Ser441Asn
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1322G>A
  hgvsp: ENSP00000373317.1:p.Ser441Asn
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1322G>A
  hgvsp: ENSP00000287647.3:p.Ser441Asn
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33294
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser441Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD

3-10089658-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089658
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089658
    reference: chr 3
allele count: 112
allele frequency: 9.225396197818853e-4
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.355C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1336C>G
  hgvsp: ENSP00000373318.1:p.Leu446Val
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1336C>G
  hgvsp: ENSP00000398754.1:p.Leu446Val
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1336C>G
  hgvsp: ENSP00000287647.3:p.Leu446Val
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1336C>G
  hgvsp: ENSP00000373317.1:p.Leu446Val
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.420C>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33314
  bin: 9.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49955
  bin: 9.75e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 2551
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu446Val
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

3-10089659-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089659
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089659
    reference: chr 3
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1337T>C
  hgvsp: ENSP00000287647.3:p.Leu446Pro
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1337T>C
  hgvsp: ENSP00000373317.1:p.Leu446Pro
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1337T>C
  hgvsp: ENSP00000398754.1:p.Leu446Pro
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.356T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1337T>C
  hgvsp: ENSP00000373318.1:p.Leu446Pro
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.421T>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2549
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49953
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu446Pro
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/3-10089660-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089660
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089660
    reference: chr 3
allele count: 5
allele frequency: 4.118480445454845e-5
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1338A>C
  hgvsp: ENST00000287647.3:c.1338A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1338A>C
  hgvsp: ENST00000383807.1:c.1338A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1338A>C
  hgvsp: ENST00000419585.1:c.1338A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1338A>C
  hgvsp: ENST00000383806.1:c.1338A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.422A>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.357A>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33305
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49954
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu446Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

3-10089664-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089664
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089664
    reference: chr 3
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1342C>T
  hgvsp: ENSP00000373318.1:p.Gln448Ter
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1342C>T
  hgvsp: ENSP00000398754.1:p.Gln448Ter
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.426C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.361C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1342C>T
  hgvsp: ENSP00000287647.3:p.Gln448Ter
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1342C>T
  hgvsp: ENSP00000373317.1:p.Gln448Ter
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33305
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln448Ter
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

3-10089665-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089665
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089665
    reference: chr 3
allele count: 3
allele frequency: 2.471088267272907e-5
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1343A>G
  hgvsp: ENSP00000287647.3:p.Gln448Arg
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.427A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1343A>G
  hgvsp: ENSP00000373318.1:p.Gln448Arg
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1343A>G
  hgvsp: ENSP00000398754.1:p.Gln448Arg
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1343A>G
  hgvsp: ENSP00000373317.1:p.Gln448Arg
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.362A>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33305
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln448Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

3-10089666-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089666
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089666
    reference: chr 3
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1344G>C
  hgvsp: ENSP00000287647.3:p.Gln448His
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.363G>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.428G>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1344G>C
  hgvsp: ENSP00000373317.1:p.Gln448His
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1344G>C
  hgvsp: ENSP00000398754.1:p.Gln448His
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1344G>C
  hgvsp: ENSP00000373318.1:p.Gln448His
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33304
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49953
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2549
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln448His
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ

3-10089670-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089670
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089670
    reference: chr 3
allele count: 47
allele frequency: 3.871435396451459e-4
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1348A>G
  hgvsp: ENSP00000398754.1:p.Ile450Val
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.432A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1348A>G
  hgvsp: ENSP00000287647.3:p.Ile450Val
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1348A>G
  hgvsp: ENSP00000373317.1:p.Ile450Val
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1348A>G
  hgvsp: ENSP00000373318.1:p.Ile450Val
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.367A>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33313
  bin: 9.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile450Val
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

3-10089671-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089671
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089671
    reference: chr 3
allele count: 6
allele frequency: 4.942257952916756e-5
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1349T>C
  hgvsp: ENSP00000398754.1:p.Ile450Thr
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1349T>C
  hgvsp: ENSP00000373317.1:p.Ile450Thr
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1349T>C
  hgvsp: ENSP00000373318.1:p.Ile450Thr
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.433T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1349T>C
  hgvsp: ENSP00000287647.3:p.Ile450Thr
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.368T>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33293
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1751
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile450Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-10089671-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089671
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089671
    reference: chr 3
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.433T>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1349T>G
  hgvsp: ENSP00000398754.1:p.Ile450Arg
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.368T>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1349T>G
  hgvsp: ENSP00000373318.1:p.Ile450Arg
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1349T>G
  hgvsp: ENSP00000373317.1:p.Ile450Arg
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1349T>G
  hgvsp: ENSP00000287647.3:p.Ile450Arg
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33293
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49961
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile450Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

3-10089680-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089680
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089680
    reference: chr 3
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1358T>C
  hgvsp: ENSP00000398754.1:p.Phe453Ser
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1358T>C
  hgvsp: ENSP00000373317.1:p.Phe453Ser
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1358T>C
  hgvsp: ENSP00000287647.3:p.Phe453Ser
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.377T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.442T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1358T>C
  hgvsp: ENSP00000373318.1:p.Phe453Ser
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33292
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49961
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Phe453Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/3-10089688-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089688
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089688
    reference: chr 3
allele count: 4
allele frequency: 3.294838635277837e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.450C>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1366C>A
  hgvsp: ENSP00000373318.1:p.Leu456Ile
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1366C>A
  hgvsp: ENSP00000287647.3:p.Leu456Ile
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1366C>A
  hgvsp: ENSP00000398754.1:p.Leu456Ile
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1366C>A
  hgvsp: ENSP00000373317.1:p.Leu456Ile
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.385C>A
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33291
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu456Ile
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

3-10089689-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089689
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089689
    reference: chr 3
allele count: 1061
allele frequency: 8.739703459637562e-3
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1367T>G
  hgvsp: ENSP00000398754.1:p.Leu456Arg
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1367T>G
  hgvsp: ENSP00000373318.1:p.Leu456Arg
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1367T>G
  hgvsp: ENSP00000373317.1:p.Leu456Arg
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.386T>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.451T>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1367T>G
  hgvsp: ENSP00000287647.3:p.Leu456Arg
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33409
  bin: 9.75e1
  variant carriers: 889
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 9.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 8.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 50135
  bin: 9.75e1
  variant carriers: 1056
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu456Arg
num of homozygotes: 1
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

3-10089690-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089690
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089690
    reference: chr 3
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1368C>T
  hgvsp: ENST00000419585.1:c.1368C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1368C>T
  hgvsp: ENST00000383806.1:c.1368C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1368C>T
  hgvsp: ENST00000287647.3:c.1368C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1368C>T
  hgvsp: ENST00000383807.1:c.1368C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.387C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.452C>T
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33185
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50051
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu456Leu
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

3-10089694-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089694
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089694
    reference: chr 3
allele count: 2
allele frequency: 1.647500741375333e-5
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1372T>C
  hgvsp: ENSP00000398754.1:p.Tyr458His
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1372T>C
  hgvsp: ENSP00000373317.1:p.Tyr458His
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1372T>C
  hgvsp: ENSP00000287647.3:p.Tyr458His
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.391T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.456T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1372T>C
  hgvsp: ENSP00000373318.1:p.Tyr458His
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33186
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Tyr458His
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum

3-10089695-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089695
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089695
    reference: chr 3
allele count: 8
allele frequency: 6.590002965501334e-5
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1373A>G
  hgvsp: ENSP00000373318.1:p.Tyr458Cys
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1373A>G
  hgvsp: ENSP00000287647.3:p.Tyr458Cys
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.457A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.392A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1373A>G
  hgvsp: ENSP00000398754.1:p.Tyr458Cys
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1373A>G
  hgvsp: ENSP00000373317.1:p.Tyr458Cys
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33187
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2515
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Tyr458Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD

3-10089696-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089696
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089696
    reference: chr 3
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.393C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1374C>G
  hgvsp: ENSP00000373318.1:p.Tyr458Ter
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1374C>G
  hgvsp: ENSP00000373317.1:p.Tyr458Ter
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1374C>G
  hgvsp: ENSP00000287647.3:p.Tyr458Ter
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.458C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1374C>G
  hgvsp: ENSP00000398754.1:p.Tyr458Ter
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33188
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50056
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr458Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

3-10089702-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089702
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089702
    reference: chr 3
allele count: 3
allele frequency: 2.471210398853358e-5
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1380T>C
  hgvsp: ENST00000383807.1:c.1380T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.399T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.464T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1380T>C
  hgvsp: ENST00000287647.3:c.1380T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1380T>C
  hgvsp: ENST00000419585.1:c.1380T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1380T>C
  hgvsp: ENST00000383806.1:c.1380T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33187
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2511
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Tyr460Tyr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

3-10089703-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089703
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089703
    reference: chr 3
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1381G>A
  hgvsp: ENSP00000398754.1:p.Ala461Thr
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.400G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.465G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1381G>A
  hgvsp: ENSP00000373318.1:p.Ala461Thr
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1381G>A
  hgvsp: ENSP00000373317.1:p.Ala461Thr
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1381G>A
  hgvsp: ENSP00000287647.3:p.Ala461Thr
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33186
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2512
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala461Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

3-10089704-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089704
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089704
    reference: chr 3
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1382C>T
  hgvsp: ENSP00000373318.1:p.Ala461Val
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.466C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.401C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1382C>T
  hgvsp: ENSP00000373317.1:p.Ala461Val
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1382C>T
  hgvsp: ENSP00000398754.1:p.Ala461Val
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1382C>T
  hgvsp: ENSP00000287647.3:p.Ala461Val
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33186
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50055
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala461Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

3-10089720-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089720
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089720
    reference: chr 3
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1398C>G
  hgvsp: ENSP00000287647.3:p.Asp466Glu
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.482C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1398C>G
  hgvsp: ENSP00000373317.1:p.Asp466Glu
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1398C>G
  hgvsp: ENSP00000398754.1:p.Asp466Glu
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1398C>G
  hgvsp: ENSP00000373318.1:p.Asp466Glu
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.417C>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33186
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2439
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp466Glu
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

3-10089722-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089722
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089722
    reference: chr 3
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1400C>T
  hgvsp: ENSP00000287647.3:p.Thr467Met
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.419C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.484C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1400C>T
  hgvsp: ENSP00000373318.1:p.Thr467Met
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1400C>T
  hgvsp: ENSP00000373317.1:p.Thr467Met
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1400C>T
  hgvsp: ENSP00000398754.1:p.Thr467Met
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33186
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr467Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

3-10089723-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089723
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089723
    reference: chr 3
allele count: 53985
allele frequency: 4.494779611343314e-1
allele num: 120106
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1401G>A
  hgvsp: ENST00000383806.1:c.1401G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.420G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1401G>A
  hgvsp: ENST00000383807.1:c.1401G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.485G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1401G>A
  hgvsp: ENST00000419585.1:c.1401G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1401G>A
  hgvsp: ENST00000287647.3:c.1401G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: synonymous
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 2.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 7.25e1
  variant carriers: 2075
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.25e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 7.75e1
  variant carriers: 2576
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 6.75e1
  variant carriers: 1632
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 8.25e1
  variant carriers: 3009
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.75e1
  variant carriers: 314
genotype depth: GenotypeDepth
  all individuals: 35395
  bin: 9.75e1
  variant carriers: 34958
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 8.75e1
  variant carriers: 3328
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 9.25e1
  variant carriers: 3436
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 3.75e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 6.25e1
  variant carriers: 1041
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.75e1
  variant carriers: 734
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 5.25e1
  variant carriers: 526
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.5e0
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 8.75e1
  variant carriers: 162
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 8.25e1
  variant carriers: 148
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.25e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.75e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 7.75e1
  variant carriers: 140
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 7.25e1
  variant carriers: 135
hgvs: p.Thr467Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

3-10089724-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089724
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089724
    reference: chr 3
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1402T>C
  hgvsp: ENSP00000398754.1:p.Tyr468His
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.486T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1402T>C
  hgvsp: ENSP00000373318.1:p.Tyr468His
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1402T>C
  hgvsp: ENSP00000373317.1:p.Tyr468His
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.421T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1402T>C
  hgvsp: ENSP00000287647.3:p.Tyr468His
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26188
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4065
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr468His
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

3-10089732-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089732
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089732
    reference: chr 3
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.429G>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1410G>C
  hgvsp: ENSP00000373318.1:p.Gln470His
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1410G>C
  hgvsp: ENSP00000398754.1:p.Gln470His
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1410G>C
  hgvsp: ENSP00000373317.1:p.Gln470His
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1410G>C
  hgvsp: ENSP00000287647.3:p.Gln470His
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.494G>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56644
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln470His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

3-10089738-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089738
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089738
    reference: chr 3
allele count: 52489
allele frequency: 4.416927530378e-1
allele num: 118836
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1413+3A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000483276
  gene symbol: FANCD2
  hgvsc: ENST00000483276.1:n.500A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1413+3A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1413+3A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1413+3A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.432+3A>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: splice region
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 5.25e1
  variant carriers: 1015
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 6.75e1
  variant carriers: 2791
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 3.25e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 9.25e1
  variant carriers: 3639
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 4.25e1
  variant carriers: 406
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 4.75e1
  variant carriers: 662
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 2.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 6.25e1
  variant carriers: 2206
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 5.75e1
  variant carriers: 1549
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 7.25e1
  variant carriers: 3444
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 8.75e1
  variant carriers: 3924
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 222
genotype depth: GenotypeDepth
  all individuals: 25785
  bin: 9.75e1
  variant carriers: 25141
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 8.25e1
  variant carriers: 3882
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 7.75e1
  variant carriers: 3772
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 7.75e1
  variant carriers: 283
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 6.25e1
  variant carriers: 264
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.25e1
  variant carriers: 215
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 7.25e1
  variant carriers: 271
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.75e1
  variant carriers: 168
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.25e1
  variant carriers: 204
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.75e1
  variant carriers: 195
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 8.25e1
  variant carriers: 258
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.5e0
  variant carriers: 165
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 2.5e0
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 5.25e1
  variant carriers: 235
hgvs: c.1413+3A>G
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

3-10089748-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089748
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089748
    reference: chr 3
allele count: 2
allele frequency: 1.648641519388024e-5
allele num: 121312
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.432+13A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1413+13A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1413+13A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1413+13A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1413+13A>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18231
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

3-10089749-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089749
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089749
    reference: chr 3
allele count: 50413
allele frequency: 4.307036429499009e-1
allele num: 117048
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1413+14T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1413+14T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1413+14T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.432+14T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1413+14T>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 4.75e1
  variant carriers: 1340
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 2.75e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 6.75e1
  variant carriers: 3948
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 4.25e1
  variant carriers: 764
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 8.25e1
  variant carriers: 3897
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 3.25e1
  variant carriers: 232
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 9.25e1
  variant carriers: 3056
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 5.25e1
  variant carriers: 1966
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 5.75e1
  variant carriers: 2719
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 8.75e1
  variant carriers: 3554
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 3.75e1
  variant carriers: 439
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 6.25e1
  variant carriers: 3463
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 7.75e1
  variant carriers: 4254
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 7.25e1
  variant carriers: 4157
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 18018
  bin: 9.75e1
  variant carriers: 17261
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 7.25e1
  variant carriers: 381
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.25e1
  variant carriers: 271
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 9.25e1
  variant carriers: 379
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 5.25e1
  variant carriers: 344
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 6.25e1
  variant carriers: 365
genotype quality: GenotypeQuality
  all individuals: 48192
  bin: 9.75e1
  variant carriers: 45209
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 7.75e1
  variant carriers: 386
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 5.75e1
  variant carriers: 350
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 6.75e1
  variant carriers: 326
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 3.25e1
  variant carriers: 300
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 7.5e0
  variant carriers: 266
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 1.25e1
  variant carriers: 311
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 2.75e1
  variant carriers: 315
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 2.5e0
  variant carriers: 202
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 8.75e1
  variant carriers: 415
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

3-10089766-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089766
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089766
    reference: chr 3
allele count: 1
allele frequency: 8.257365570088519e-6
allele num: 121104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1413+31G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.432+31G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1413+31G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1413+31G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1413+31G>A
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4430
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1856
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

3-10089767-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089767
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089767
    reference: chr 3
allele count: 11
allele frequency: 9.083702186694853e-5
allele num: 121096
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1413+32G>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1413+32G>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.432+32G>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1413+32G>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1413+32G>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5303
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5854
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4430
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47493
  bin: 9.75e1
  variant carriers: 7
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/3-10089768-AAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089768
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089766
    reference: chr 3
allele count: 4
allele frequency: 3.303218986902737e-5
allele num: 121094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.432+37_432+38delCA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1413+37_1413+38delCA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1413+37_1413+38delCA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1413+37_1413+38delCA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1413+37_1413+38delCA
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47490
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: AAC
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

3-10089770-CACAGAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089770
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089764
    reference: chr 3
allele count: 3
allele frequency: 2.478888136041381e-5
allele num: 121022
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1413+37_1413+42delCAGAAA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.432+37_432+42delCAGAAA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1413+37_1413+42delCAGAAA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1413+37_1413+42delCAGAAA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1413+37_1413+42delCAGAAA
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6264
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: CACAGAA
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/3-10089770-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089770
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089770
    reference: chr 3
allele count: 1
allele frequency: 8.26296045347127e-6
allele num: 121022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.432+35C>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1413+35C>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1413+35C>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1413+35C>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1413+35C>A
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

3-10089772-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10089772
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10089772
    reference: chr 3
allele count: 47145
allele frequency: 4.090175596890616e-1
allele num: 115264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.1413+37C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.1413+37C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.1413+37C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.1413+37C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl transcript: ENST00000464934
  gene symbol: FANCD2
  hgvsc: ENST00000464934.1:n.432+37C>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 6.25e1
  variant carriers: 4414
genotype depth: GenotypeDepth
  all individuals: 6056
  bin: 4.75e1
  variant carriers: 4651
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 7.25e1
  variant carriers: 2973
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 5.75e1
  variant carriers: 5142
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 3.75e1
  variant carriers: 2580
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 6.75e1
  variant carriers: 3714
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 3.25e1
  variant carriers: 1441
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 2.25e1
  variant carriers: 273
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 4.25e1
  variant carriers: 3811
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 5.25e1
  variant carriers: 5222
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 2.75e1
  variant carriers: 639
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 7.75e1
  variant carriers: 2111
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 8.75e1
  variant carriers: 1224
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 8.25e1
  variant carriers: 1569
genotype depth: GenotypeDepth
  all individuals: 7919
  bin: 9.75e1
  variant carriers: 7417
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.25e1
  variant carriers: 1039
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 7.75e1
  variant carriers: 482
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 4.75e1
  variant carriers: 467
genotype quality: GenotypeQuality
  all individuals: 43313
  bin: 9.75e1
  variant carriers: 39977
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 1.25e1
  variant carriers: 348
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 5.75e1
  variant carriers: 462
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 4.25e1
  variant carriers: 396
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 1.75e1
  variant carriers: 341
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 2.5e0
  variant carriers: 194
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1344
bin: 4.25e1
variant carriers: 31

GenotypeQuality
all individuals: 1480
bin: 5.25e1
variant carriers: 31

GenotypeQuality
all individuals: 17878
bin: 6.25e1
variant carriers: 30

GenotypeQuality
all individuals: 615
bin: 9.25e1
variant carriers: 25

GenotypeQuality
all individuals: 2533
bin: 3.25e1
variant carriers: 40

GenotypeQuality
all individuals: 534
bin: 8.75e1
variant carriers: 21

GenotypeQuality
all individuals: 1575
bin: 7.25e1
variant carriers: 29

South Asian
type: Population
allele count: 35
allele frequency: 2.347103004291846e-3
allele num: 14912
num of homozygotes: 0

East Asian
type: Population
allele count: 67
allele frequency: 9.394279304542905e-3
allele num: 7132
num of homozygotes: 0

African
type: Population
allele count: 66
allele frequency: 9.187082405345211e-3
allele num: 7184
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.8860103626943e-3
allele num: 772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 463
allele frequency: 9.171222565565327e-3
allele num: 50484
num of homozygotes: 0

Latino
type: Population
allele count: 75
allele frequency: 7.754342431761787e-3
allele num: 9672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 47
allele frequency: 9.373753490227364e-3
allele num: 5014
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.84e-2

QD
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 4.324e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.336e0

MQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

DP
type: SiteQuality
SIO_000300: 1.5817e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.059e0

MQ
type: SiteQuality
SIO_000300: 2.924e1

VQSLOD
type: SiteQuality
SIO_000300: -7.026e0

GenotypeQuality
all individuals: 2246
bin: 2.75e1
variant carriers: 97

GenotypeQuality
all individuals: 2503
bin: 3.25e1
variant carriers: 99

GenotypeQuality
all individuals: 1018
bin: 9.25e1
variant carriers: 93

GenotypeQuality
all individuals: 686
bin: 5.25e1
variant carriers: 117

GenotypeQuality
all individuals: 2599
bin: 7.75e1
variant carriers: 97

GenotypeQuality
all individuals: 832
bin: 8.75e1
variant carriers: 102

GenotypeQuality
all individuals: 5536
bin: 9.75e1
variant carriers: 2492

GenotypeQuality
all individuals: 254
bin: 1.75e1
variant carriers: 103

GenotypeQuality
all individuals: 6586
bin: 6.75e1
variant carriers: 100

East Asian
type: Population
allele count: 158
allele frequency: 1.910058027079304e-2
allele num: 8272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2625
allele frequency: 4.13047583081571e-2
allele num: 63552
num of homozygotes: 0

Latino
type: Population
allele count: 182
allele frequency: 1.639048991354467e-2
allele num: 11104
num of homozygotes: 0

South Asian
type: Population
allele count: 109
allele frequency: 6.822734101151727e-3
allele num: 15976
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 383
allele frequency: 5.952751010258004e-2
allele num: 6434
num of homozygotes: 0

Other
type: Population
allele count: 22
allele frequency: 2.522935779816514e-2
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 516
allele frequency: 5.466101694915254e-2
allele num: 9440
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.471e0

QD
type: SiteQuality
SIO_000300: 2.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.23e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-2

MQ
type: SiteQuality
SIO_000300: 2.921e1

DP
type: SiteQuality
SIO_000300: 1.789875e6

VQSLOD
type: SiteQuality
SIO_000300: -8.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

FS
type: SiteQuality
SIO_000300: 4.224e0

GenotypeQuality
all individuals: 1086
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2450
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1860
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2805
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20559
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1584
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2559
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1699
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.594718585655141e-5
allele num: 53622
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.551362683438155e-5
allele num: 15264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.126e0

VQSLOD
type: SiteQuality
SIO_000300: -6.177e-1

FS
type: SiteQuality
SIO_000300: 2.472e0

MQ
type: SiteQuality
SIO_000300: 2.978e1

DP
type: SiteQuality
SIO_000300: 1.488237e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.02e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

QD
type: SiteQuality
SIO_000300: 1.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

GenotypeQuality
all individuals: 865
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3673
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 928
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5195
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.627180421765165e-5
allele num: 61456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15730
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.323e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

MQ
type: SiteQuality
SIO_000300: 3.917e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.021e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: -2.851e0

FS
type: SiteQuality
SIO_000300: 6.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

DP
type: SiteQuality
SIO_000300: 1.631412e6

GenotypeQuality
all individuals: 1050
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5279
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19417
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10978
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.588007368354189e-5
allele num: 62972
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.586e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.567745e6

QD
type: SiteQuality
SIO_000300: 5.0e-1

MQ
type: SiteQuality
SIO_000300: 4.108e1

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10246
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1979
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3780
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3442
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.597495127639861e-5
allele num: 62598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9284
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.271e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQ
type: SiteQuality
SIO_000300: 3.051e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

DP
type: SiteQuality
SIO_000300: 1.538877e6

MQRankSum
type: SiteQuality
SIO_000300: 8.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.74e0

GenotypeQuality
all individuals: 3659
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5211
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.079913606911447e-4
allele num: 9260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8030
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.064e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.004e0

MQRankSum
type: SiteQuality
SIO_000300: -4.56e-1

DP
type: SiteQuality
SIO_000300: 1.527892e6

MQ
type: SiteQuality
SIO_000300: 3.06e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.22e-1

QD
type: SiteQuality
SIO_000300: 6.03e0

GenotypeQuality
all individuals: 2752
bin: 6.75e1
variant carriers: 89

GenotypeQuality
all individuals: 10053
bin: 2.25e1
variant carriers: 88

GenotypeQuality
all individuals: 4418
bin: 9.75e1
variant carriers: 2185

GenotypeQuality
all individuals: 502
bin: 8.75e1
variant carriers: 87

GenotypeQuality
all individuals: 1463
bin: 1.25e1
variant carriers: 86

GenotypeQuality
all individuals: 1023
bin: 5.75e1
variant carriers: 99

GenotypeQuality
all individuals: 1125
bin: 7.75e1
variant carriers: 94

Other
type: Population
allele count: 17
allele frequency: 2.185089974293059e-2
allele num: 778
num of homozygotes: 0

Latino
type: Population
allele count: 153
allele frequency: 1.592422980849292e-2
allele num: 9608
num of homozygotes: 0

African
type: Population
allele count: 463
allele frequency: 5.829765802064971e-2
allele num: 7942
num of homozygotes: 0

East Asian
type: Population
allele count: 136
allele frequency: 1.907433380084151e-2
allele num: 7130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 348
allele frequency: 6.066945606694561e-2
allele num: 5736
num of homozygotes: 0

South Asian
type: Population
allele count: 90
allele frequency: 6.172839506172839e-3
allele num: 14580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2342
allele frequency: 4.383305259217668e-2
allele num: 53430
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.894e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.807e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.95e0

FS
type: SiteQuality
SIO_000300: 4.339e0

QD
type: SiteQuality
SIO_000300: 4.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.11e-1

DP
type: SiteQuality
SIO_000300: 1.495602e6

GenotypeQuality
all individuals: 416
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2239
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6607
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11522
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5136
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.435834727764191e-5
allele num: 15538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.650382888830209e-5
allele num: 60592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.277e0

DP
type: SiteQuality
SIO_000300: 1.361299e6

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

MQ
type: SiteQuality
SIO_000300: 2.83e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

QD
type: SiteQuality
SIO_000300: 3.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.85e-1

GenotypeQuality
all individuals: 4727
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3361
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12436
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2421
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7756
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.305785123966942e-5
allele num: 60500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15544
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.106e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.106e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.43e-1

FS
type: SiteQuality
SIO_000300: 6.702e0

DP
type: SiteQuality
SIO_000300: 1.352564e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

MQ
type: SiteQuality
SIO_000300: 2.987e1

QD
type: SiteQuality
SIO_000300: 1.05e1

GenotypeQuality
all individuals: 5802
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4975
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3358
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1416
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.275681341719078e-4
allele num: 15264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58746
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

FS
type: SiteQuality
SIO_000300: 4.907e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

MQ
type: SiteQuality
SIO_000300: 3.143e1

DP
type: SiteQuality
SIO_000300: 1.310511e6

VQSLOD
type: SiteQuality
SIO_000300: -4.479e0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-2

QD
type: SiteQuality
SIO_000300: 3.92e0

GenotypeQuality
all individuals: 2029
bin: 1.25e1
variant carriers: 77

GenotypeQuality
all individuals: 1338
bin: 7.75e1
variant carriers: 1004

GenotypeQuality
all individuals: 1215
bin: 8.25e1
variant carriers: 961

GenotypeQuality
all individuals: 1109
bin: 4.75e1
variant carriers: 386

GenotypeQuality
all individuals: 1034
bin: 4.25e1
variant carriers: 201

GenotypeQuality
all individuals: 1473
bin: 1.75e1
variant carriers: 146

GenotypeQuality
all individuals: 1011
bin: 9.25e1
variant carriers: 865

Other
type: Population
allele count: 132
allele frequency: 2.340425531914894e-1
allele num: 564
num of homozygotes: 0

African
type: Population
allele count: 1782
allele frequency: 3.132911392405063e-1
allele num: 5688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10569
allele frequency: 2.878267973856209e-1
allele num: 36720
num of homozygotes: 0

Latino
type: Population
allele count: 1424
allele frequency: 2.13301378070701e-1
allele num: 6676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1581
allele frequency: 3.496240601503759e-1
allele num: 4522
num of homozygotes: 0

East Asian
type: Population
allele count: 1065
allele frequency: 2.198596201486375e-1
allele num: 4844
num of homozygotes: 0

South Asian
type: Population
allele count: 1314
allele frequency: 1.173843130248347e-1
allele num: 11194
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.325578e6

MQ
type: SiteQuality
SIO_000300: 3.277e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.931e0

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

QD
type: SiteQuality
SIO_000300: 4.51e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.191e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.95e-1

GenotypeQuality
all individuals: 1011
bin: 9.25e1
variant carriers: 865

GenotypeQuality
all individuals: 2700
bin: 3.25e1
variant carriers: 193

GenotypeQuality
all individuals: 5296
bin: 2.25e1
variant carriers: 139

GenotypeQuality
all individuals: 1396
bin: 6.75e1
variant carriers: 775

GenotypeQuality
all individuals: 972
bin: 5.25e1
variant carriers: 457

GenotypeQuality
all individuals: 899
bin: 7.25e1
variant carriers: 582

GenotypeQuality
all individuals: 1334
bin: 7.75e1
variant carriers: 1005

Latino
type: Population
allele count: 1426
allele frequency: 2.183098591549296e-1
allele num: 6532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10571
allele frequency: 2.918231007067138e-1
allele num: 36224
num of homozygotes: 0

East Asian
type: Population
allele count: 1064
allele frequency: 2.248520710059172e-1
allele num: 4732
num of homozygotes: 0

South Asian
type: Population
allele count: 1316
allele frequency: 1.187297004691447e-1
allele num: 11084
num of homozygotes: 0

Other
type: Population
allele count: 132
allele frequency: 2.4e-1
allele num: 550
num of homozygotes: 0

African
type: Population
allele count: 1777
allele frequency: 3.157427149964463e-1
allele num: 5628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1580
allele frequency: 3.515798842901647e-1
allele num: 4494
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.254e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.315768e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.968e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.28e-1

MQ
type: SiteQuality
SIO_000300: 3.304e1

QD
type: SiteQuality
SIO_000300: 4.56e0

GenotypeQuality
all individuals: 343
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4634
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10643
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3124
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1732
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2466
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15010
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7300
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.228501228501228e-3
allele num: 814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.144e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

DP
type: SiteQuality
SIO_000300: 1.189772e6

VQSLOD
type: SiteQuality
SIO_000300: -3.564e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.01e-1

MQ
type: SiteQuality
SIO_000300: 3.396e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 7.93e0

GenotypeQuality
all individuals: 998
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6868
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10067
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2227
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2332
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.800244833297328e-5
allele num: 55548
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 4.36e0

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.181854e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.08e-1

MQ
type: SiteQuality
SIO_000300: 3.09e1

GenotypeQuality
all individuals: 331
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7757
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4329
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6859
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 583
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1692
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3123
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.820565103408098e-5
allele num: 54928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e0

DP
type: SiteQuality
SIO_000300: 1.175139e6

VQSLOD
type: SiteQuality
SIO_000300: -5.509e0

MQ
type: SiteQuality
SIO_000300: 3.116e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.416e0

MQRankSum
type: SiteQuality
SIO_000300: -3.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.22e0

GenotypeQuality
all individuals: 9146
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6900
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 390
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4474
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.681071928145476e-5
allele num: 54332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14744
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.858e1

MQRankSum
type: SiteQuality
SIO_000300: 9.06e-1

DP
type: SiteQuality
SIO_000300: 1.17136e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.152e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.486e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.945e0

QD
type: SiteQuality
SIO_000300: 7.5e0

GenotypeQuality
all individuals: 758
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 927
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1852
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3950
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8156
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.386577925679423e-4
allele num: 7212
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.76e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.331e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.478e-1

MQ
type: SiteQuality
SIO_000300: 5.781e1

DP
type: SiteQuality
SIO_000300: 6.872715e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

GenotypeQuality
all individuals: 1417
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2700
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.4543429844098e-4
allele num: 4490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5524
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.279e0

MQRankSum
type: SiteQuality
SIO_000300: 5.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.38e0

DP
type: SiteQuality
SIO_000300: 6.818921e6

QD
type: SiteQuality
SIO_000300: 9.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.002e0

VQSLOD
type: SiteQuality
SIO_000300: -1.936e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.355e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 5.864e1

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1237
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.834654805646877e-4
allele num: 10342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.487e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

QD
type: SiteQuality
SIO_000300: 1.079e1

MQ
type: SiteQuality
SIO_000300: 5.774e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.02e-1

DP
type: SiteQuality
SIO_000300: 6.156436e6

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2340
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49927
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.467406380027739e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.627e1

BaseQRankSum
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SIO_000300: -1.173e0

MQRankSum
type: SiteQuality
SIO_000300: -3.35e0

ClippingRankSum
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SIO_000300: 2.31e0

InbreedingCoeff
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SIO_000300: -2.0e-4

FS
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DP
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.871e1

QD
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SIO_000300: 9.289999999999999e0

DP
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SIO_000300: 6.157932e6

ReadPosRankSum
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SIO_000300: -1.11e-1

MQRankSum
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FS
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.057e0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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MQ
type: SiteQuality
SIO_000300: 5.685e1

ReadPosRankSum
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SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 8.48e-1

MQRankSum
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
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VQSLOD
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MQRankSum
type: SiteQuality
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FS
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BaseQRankSum
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QD
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DP
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ClippingRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.816e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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QD
type: SiteQuality
SIO_000300: 1.255e1

VQSLOD
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InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
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SIO_000300: -6.3e-2

MQRankSum
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FS
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
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BaseQRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 5
allele frequency: 4.814172925091469e-4
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.496942079386017e-5
allele num: 66712
num of homozygotes: 0

South Asian
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -3.83e-1

InbreedingCoeff
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FS
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VQSLOD
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QD
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BaseQRankSum
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DP
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MQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.765e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele num: 11576
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African
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South Asian
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QD
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InbreedingCoeff
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MQ
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 66712
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East Asian
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South Asian
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African
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Latino
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European (Finnish)
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Other
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InbreedingCoeff
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DP
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VQSLOD
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QD
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MQRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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African
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European (Finnish)
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Other
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ClippingRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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DP
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Latino
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Other
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East Asian
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VQSLOD
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MQRankSum
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DP
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FS
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QD
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InbreedingCoeff
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BaseQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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Other
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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QD
type: SiteQuality
SIO_000300: 6.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.97e-1

FS
type: SiteQuality
SIO_000300: 2.724e0

MQRankSum
type: SiteQuality
SIO_000300: 3.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 6.16053e6

MQ
type: SiteQuality
SIO_000300: 5.786e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.15e0

VQSLOD
type: SiteQuality
SIO_000300: -3.87e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1536
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 8.75e1
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GenotypeQuality
all individuals: 1360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49933
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.971e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.271e0

QD
type: SiteQuality
SIO_000300: 4.31e0

FS
type: SiteQuality
SIO_000300: 3.005e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.057e0

MQ
type: SiteQuality
SIO_000300: 5.188e1

DP
type: SiteQuality
SIO_000300: 6.160827e6

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.271e0

MQ
type: SiteQuality
SIO_000300: 5.188e1

FS
type: SiteQuality
SIO_000300: 3.005e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.057e0

DP
type: SiteQuality
SIO_000300: 6.160827e6

VQSLOD
type: SiteQuality
SIO_000300: -3.971e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.31e0

GenotypeQuality
all individuals: 2557
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.160517e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.14e-1

MQ
type: SiteQuality
SIO_000300: 5.671e1

FS
type: SiteQuality
SIO_000300: 3.356e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.666e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.98e-1

QD
type: SiteQuality
SIO_000300: 2.52e0

VQSLOD
type: SiteQuality
SIO_000300: -4.357e0

GenotypeQuality
all individuals: 1060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.751e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.634e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 6.161998e6

QD
type: SiteQuality
SIO_000300: 6.79e0

FS
type: SiteQuality
SIO_000300: 1.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 7.874015748031496e-4
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.634e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

QD
type: SiteQuality
SIO_000300: 6.79e0

FS
type: SiteQuality
SIO_000300: 1.98e0

DP
type: SiteQuality
SIO_000300: 6.161998e6

MQ
type: SiteQuality
SIO_000300: 5.751e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1755
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49932
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 1252
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.26832222895215e-4
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.161838e6

QD
type: SiteQuality
SIO_000300: 8.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

FS
type: SiteQuality
SIO_000300: 1.848e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.08e0

VQSLOD
type: SiteQuality
SIO_000300: -1.147e0

MQRankSum
type: SiteQuality
SIO_000300: 2.43e0

MQ
type: SiteQuality
SIO_000300: 5.757e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49931
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.62e-1

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 6.160088e6

QD
type: SiteQuality
SIO_000300: 1.078e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.178e0

MQRankSum
type: SiteQuality
SIO_000300: 2.51e0

MQ
type: SiteQuality
SIO_000300: 5.709e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.101e0

FS
type: SiteQuality
SIO_000300: 4.454e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.194e0

MQ
type: SiteQuality
SIO_000300: 5.576e1

VQSLOD
type: SiteQuality
SIO_000300: -3.641e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e0

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.16e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 1060
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49932
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.344e0

VQSLOD
type: SiteQuality
SIO_000300: -1.588e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 6.160117e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.755e0

MQ
type: SiteQuality
SIO_000300: 5.715e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 3.252e0

QD
type: SiteQuality
SIO_000300: 3.66e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

African
type: Population
allele count: 106
allele frequency: 1.019034800999808e-2
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.993586862057598e-5
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.77e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
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DP
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SIO_000300: 6.167893e6

FS
type: SiteQuality
SIO_000300: 2.968e0

VQSLOD
type: SiteQuality
SIO_000300: -1.156e0

MQ
type: SiteQuality
SIO_000300: 5.577e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

GenotypeQuality
all individuals: 1356
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Finnish)
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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ReadPosRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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MQ
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DP
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FS
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BaseQRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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allele num: 10402
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele num: 11578
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Other
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ClippingRankSum
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DP
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QD
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ReadPosRankSum
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MQ
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MQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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Other
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European (Non-Finnish)
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South Asian
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European (Finnish)
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East Asian
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MQ
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QD
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MQRankSum
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FS
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DP
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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ReadPosRankSum
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BaseQRankSum
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FS
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DP
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MQ
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QD
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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Other
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East Asian
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Latino
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European (Finnish)
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num of homozygotes: 0

VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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FS
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ClippingRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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allele frequency: 3.455425017277125e-4
allele num: 11576
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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allele count: 20
allele frequency: 2.996793431028799e-4
allele num: 66738
num of homozygotes: 0

South Asian
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allele frequency: 1.393095093882496e-3
allele num: 16510
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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DP
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 4.495190146543199e-5
allele num: 66738
num of homozygotes: 0

Latino
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Other
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African
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East Asian
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South Asian
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European (Finnish)
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ClippingRankSum
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DP
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QD
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VQSLOD
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BaseQRankSum
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FS
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MQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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South Asian
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Latino
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European (Non-Finnish)
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East Asian
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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MQ
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DP
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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South Asian
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Other
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European (Non-Finnish)
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East Asian
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African
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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VQSLOD
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FS
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BaseQRankSum
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MQ
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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South Asian
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Latino
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Other
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European (Finnish)
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Latino
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allele frequency: 3.282653766413269e-3
allele num: 11576
num of homozygotes: 0

African
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allele count: 1007
allele frequency: 9.680830609498173e-2
allele num: 10402
num of homozygotes: 1

European (Non-Finnish)
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allele count: 11
allele frequency: 1.648285782785903e-4
allele num: 66736
num of homozygotes: 0

South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

FS
type: SiteQuality
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DP
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.09e-1

VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.63e1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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QD
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MQRankSum
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FS
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele num: 16510
num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

FS
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BaseQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

QD
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
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DP
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 4.239854633555421e-4
allele num: 16510
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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DP
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VQSLOD
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FS
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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East Asian
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South Asian
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Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
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SIO_000300: 5.795e1

BaseQRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.495190146543199e-5
allele num: 66738
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: -3.071e0

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
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DP
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

East Asian
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South Asian
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Latino
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allele num: 11576
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European (Finnish)
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allele frequency: 0.0e0
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Other
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African
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BaseQRankSum
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QD
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ReadPosRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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DP
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MQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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South Asian
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European (Non-Finnish)
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African
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East Asian
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Latino
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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ReadPosRankSum
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DP
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ClippingRankSum
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FS
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Finnish)
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Latino
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Other
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European (Non-Finnish)
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MQRankSum
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FS
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MQ
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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South Asian
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African
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Latino
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European (Finnish)
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East Asian
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MQRankSum
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QD
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MQ
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FS
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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South Asian
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Other
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European (Non-Finnish)
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allele count: 30614
allele frequency: 4.632869249394673e-1
allele num: 66080
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East Asian
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.72e-1

DP
type: SiteQuality
SIO_000300: 6.70233e6

MQ
type: SiteQuality
SIO_000300: 5.647e1

VQSLOD
type: SiteQuality
SIO_000300: 5.765e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.134e-1

FS
type: SiteQuality
SIO_000300: 3.249e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.069e0

QD
type: SiteQuality
SIO_000300: 5.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56642
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.596e0

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.728e1

QD
type: SiteQuality
SIO_000300: 7.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

DP
type: SiteQuality
SIO_000300: 5.920017e6

FS
type: SiteQuality
SIO_000300: 7.787e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.86e-1

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.768e0

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

QD
type: SiteQuality
SIO_000300: 9.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.208e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

DP
type: SiteQuality
SIO_000300: 5.919073e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

GenotypeQuality
all individuals: 284
bin: 2.75e1
variant carriers: 176

GenotypeQuality
all individuals: 291
bin: 1.25e1
variant carriers: 160

GenotypeQuality
all individuals: 528
bin: 8.75e1
variant carriers: 276

GenotypeQuality
all individuals: 308
bin: 3.75e1
variant carriers: 216

GenotypeQuality
all individuals: 337
bin: 5.75e1
variant carriers: 272

GenotypeQuality
all individuals: 302
bin: 2.25e1
variant carriers: 171

GenotypeQuality
all individuals: 51705
bin: 9.75e1
variant carriers: 48892

GenotypeQuality
all individuals: 722
bin: 9.25e1
variant carriers: 322

GenotypeQuality
all individuals: 781
bin: 6.75e1
variant carriers: 244

Latino
type: Population
allele count: 4344
allele frequency: 3.849016480595428e-1
allele num: 11286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29791
allele frequency: 4.555895396849671e-1
allele num: 65390
num of homozygotes: 0

Other
type: Population
allele count: 390
allele frequency: 4.323725055432373e-1
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 3459
allele frequency: 4.111982881597718e-1
allele num: 8412
num of homozygotes: 0

African
type: Population
allele count: 4836
allele frequency: 4.74210629535203e-1
allele num: 10198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3013
allele frequency: 4.632533825338254e-1
allele num: 6504
num of homozygotes: 0

South Asian
type: Population
allele count: 6656
allele frequency: 4.122893954410307e-1
allele num: 16144
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.828000000000001e-1

FS
type: SiteQuality
SIO_000300: 4.677e0

MQ
type: SiteQuality
SIO_000300: 5.633e1

DP
type: SiteQuality
SIO_000300: 5.880296e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.56e-1

QD
type: SiteQuality
SIO_000300: 5.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: -3.54e0

VQSLOD
type: SiteQuality
SIO_000300: 5.384e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.06e0

GenotypeQuality
all individuals: 324
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56126
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 626
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.557e0

QD
type: SiteQuality
SIO_000300: 1.075e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

DP
type: SiteQuality
SIO_000300: 5.257591e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e-1

MQ
type: SiteQuality
SIO_000300: 5.675e1

VQSLOD
type: SiteQuality
SIO_000300: -1.526e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

GenotypeQuality
all individuals: 496
bin: 4.25e1
variant carriers: 333

GenotypeQuality
all individuals: 910
bin: 8.25e1
variant carriers: 396

GenotypeQuality
all individuals: 441
bin: 3.75e1
variant carriers: 284

GenotypeQuality
all individuals: 477
bin: 1.75e1
variant carriers: 242

GenotypeQuality
all individuals: 530
bin: 4.75e1
variant carriers: 365

Latino
type: Population
allele count: 4084
allele frequency: 3.704644412191582e-1
allele num: 11024
num of homozygotes: 0

South Asian
type: Population
allele count: 6362
allele frequency: 4.007811515686027e-1
allele num: 15874
num of homozygotes: 0

Other
type: Population
allele count: 374
allele frequency: 4.240362811791383e-1
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 4658
allele frequency: 4.64406779661017e-1
allele num: 10030
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28765
allele frequency: 4.456511635112942e-1
allele num: 64546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2917
allele frequency: 4.533727074914516e-1
allele num: 6434
num of homozygotes: 0

East Asian
type: Population
allele count: 3253
allele frequency: 3.939210462581739e-1
allele num: 8258
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.78e0

QD
type: SiteQuality
SIO_000300: 4.69e0

MQ
type: SiteQuality
SIO_000300: 5.621e1

DP
type: SiteQuality
SIO_000300: 5.238277e6

FS
type: SiteQuality
SIO_000300: 8.163e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.416e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.878e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.05e-1

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47502
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1559
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.776e1

DP
type: SiteQuality
SIO_000300: 3.938632e6

VQSLOD
type: SiteQuality
SIO_000300: -1.323e0

QD
type: SiteQuality
SIO_000300: 1.63e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-2

FS
type: SiteQuality
SIO_000300: 2.668e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.251e0

GenotypeQuality
all individuals: 1852
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2565
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.847897224578839e-4
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998500749625187e-5
allele num: 66700
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.5e-2

FS
type: SiteQuality
SIO_000300: 1.3094e1

VQSLOD
type: SiteQuality
SIO_000300: -3.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.413e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.27e-1

MQ
type: SiteQuality
SIO_000300: 5.617e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

DP
type: SiteQuality
SIO_000300: 3.938258e6

QD
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 2122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2080
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2563
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998770504093322e-5
allele num: 66694
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.112e1

QD
type: SiteQuality
SIO_000300: 3.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 5.811e1

MQRankSum
type: SiteQuality
SIO_000300: -2.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.602e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.308e0

DP
type: SiteQuality
SIO_000300: 3.937628e6

GenotypeQuality
all individuals: 1893
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47489
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312673450508788e-4
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.256e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

FS
type: SiteQuality
SIO_000300: 1.133e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.667e0

DP
type: SiteQuality
SIO_000300: 3.935545e6

MQ
type: SiteQuality
SIO_000300: 5.692e1

QD
type: SiteQuality
SIO_000300: 8.34e0

VQSLOD
type: SiteQuality
SIO_000300: -1.287e-1

GenotypeQuality
all individuals: 1216
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47489
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2556
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.133e1

QD
type: SiteQuality
SIO_000300: 8.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.287e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.667e0

MQRankSum
type: SiteQuality
SIO_000300: -2.256e0

MQ
type: SiteQuality
SIO_000300: 5.692e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

DP
type: SiteQuality
SIO_000300: 3.935545e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.24e-1