1-226475348-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475348
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475348
    reference: chr 1
allele count: 1
allele frequency: 8.495021917156547e-6
allele num: 117716
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.446+17A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.341+17A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.326+17A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.293+17A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.611+17A>G
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5983
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6022
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6576
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genotype depth: GenotypeDepth
  all individuals: 689
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 266
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genotype depth: GenotypeDepth
  all individuals: 526
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 400
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 474
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
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genotype quality: GenotypeQuality
  all individuals: 3702
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genotype quality: GenotypeQuality
  all individuals: 3030
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP

1-226475358-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475358
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475358
    reference: chr 1
allele count: 1
allele frequency: 8.406328283932143e-6
allele num: 118958
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.326+7A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.611+7A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.341+7A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.293+7A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.446+7A>G
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6811
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 6581
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 690
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genotype depth: GenotypeDepth
  all individuals: 526
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 46
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  variant carriers: 0
hgvs: c.446+7A>G
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-226475375-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475375
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475375
    reference: chr 1
allele count: 1
allele frequency: 8.329446258412741e-6
allele num: 120056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.316A>T
  hgvsp: ENSP00000418121.1:p.Asn106Tyr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.436A>T
  hgvsp: ENSP00000329102.5:p.Asn146Tyr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.283A>T
  hgvsp: ENSP00000355766.1:p.Asn95Tyr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.331A>T
  hgvsp: ENSP00000418489.1:p.Asn111Tyr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.601A>T
  hgvsp: ENSP00000355773.1:p.Asn201Tyr
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1928
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
hgvs: p.Asn146Tyr
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

1-226475382-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475382
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475382
    reference: chr 1
allele count: 1
allele frequency: 8.308960382876895e-6
allele num: 120352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.324C>T
  hgvsp: ENST00000481685.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.429C>T
  hgvsp: ENST00000328205.5:c.429C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.594C>T
  hgvsp: ENST00000366808.1:c.594C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.309C>T
  hgvsp: ENST00000460719.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.276C>T
  hgvsp: ENST00000366801.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1929
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe143Phe
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

1-226475391-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475391
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475391
    reference: chr 1
allele count: 6
allele frequency: 4.973062577704103e-5
allele num: 120650
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.315C>T
  hgvsp: ENST00000481685.1:c.315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.585C>T
  hgvsp: ENST00000366808.1:c.585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.300C>T
  hgvsp: ENST00000460719.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.420C>T
  hgvsp: ENST00000328205.5:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.267C>T
  hgvsp: ENST00000366801.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5985
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30638
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4044
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Tyr140Tyr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

1-226475392-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475392
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475392
    reference: chr 1
allele count: 2
allele frequency: 1.65708320214758e-5
allele num: 120694
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.266A>G
  hgvsp: ENSP00000355766.1:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.314A>G
  hgvsp: ENSP00000418489.1:p.Tyr105Cys
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.299A>G
  hgvsp: ENSP00000418121.1:p.Tyr100Cys
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.419A>G
  hgvsp: ENSP00000329102.5:p.Tyr140Cys
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.584A>G
  hgvsp: ENSP00000355773.1:p.Tyr195Cys
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5986
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4051
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3213
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12041
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3167
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Tyr140Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

1-226475409-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475409
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475409
    reference: chr 1
allele count: 1
allele frequency: 8.271435424903638e-6
allele num: 120898
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.249A>G
  hgvsp: ENST00000366801.1:c.249A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.297A>G
  hgvsp: ENST00000481685.1:c.297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.282A>G
  hgvsp: ENST00000460719.1:c.282A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.402A>G
  hgvsp: ENST00000328205.5:c.402A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.567A>G
  hgvsp: ENST00000366808.1:c.567A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.198A>G
  hgvsp: ENST00000359525.2:c.198A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5986
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3176
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3214
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4087
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala134Ala
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

1-226475421-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475421
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475421
    reference: chr 1
allele count: 1
allele frequency: 8.265692417053776e-6
allele num: 120982
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.390G>A
  hgvsp: ENST00000328205.5:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.285G>A
  hgvsp: ENST00000481685.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.270G>A
  hgvsp: ENST00000460719.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.186G>A
  hgvsp: ENST00000359525.2:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.237G>A
  hgvsp: ENST00000366801.1:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.555G>A
  hgvsp: ENST00000366808.1:c.555G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5988
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3190
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys130Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-226475460-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475460
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475460
    reference: chr 1
allele count: 1
allele frequency: 8.25000825000825e-6
allele num: 121212
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.231T>C
  hgvsp: ENST00000460719.1:c.231T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.351T>C
  hgvsp: ENST00000328205.5:c.351T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.198T>C
  hgvsp: ENST00000366801.1:c.198T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.246T>C
  hgvsp: ENST00000481685.1:c.246T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.516T>C
  hgvsp: ENST00000366808.1:c.516T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.147T>C
  hgvsp: ENST00000359525.2:c.147T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5987
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30641
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12344
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala117Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

1-226475464-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475464
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475464
    reference: chr 1
allele count: 1
allele frequency: 8.250416646040625e-6
allele num: 121206
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.227A>C
  hgvsp: ENSP00000418121.1:p.Lys76Thr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.242A>C
  hgvsp: ENSP00000418489.1:p.Lys81Thr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.512A>C
  hgvsp: ENSP00000355773.1:p.Lys171Thr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.143A>C
  hgvsp: ENSP00000352515.2:p.Lys48Thr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.347A>C
  hgvsp: ENSP00000329102.5:p.Lys116Thr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.194A>C
  hgvsp: ENSP00000355766.1:p.Lys65Thr
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5987
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3181
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys116Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-226475472-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475472
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475472
    reference: chr 1
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.186A>G
  hgvsp: ENST00000366801.1:c.186A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.219A>G
  hgvsp: ENST00000460719.1:c.219A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.339A>G
  hgvsp: ENST00000328205.5:c.339A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.234A>G
  hgvsp: ENST00000481685.1:c.234A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.504A>G
  hgvsp: ENST00000366808.1:c.504A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.135A>G
  hgvsp: ENST00000359525.2:c.135A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5988
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12294
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30640
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3208
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro113Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

1-226475483-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475483
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475483
    reference: chr 1
allele count: 5
allele frequency: 4.132504628405184e-5
allele num: 120992
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.223A>G
  hgvsp: ENSP00000418489.1:p.Met75Val
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.208A>G
  hgvsp: ENSP00000418121.1:p.Met70Val
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.493A>G
  hgvsp: ENSP00000355773.1:p.Met165Val
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.124A>G
  hgvsp: ENSP00000352515.2:p.Met42Val
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.175A>G
  hgvsp: ENSP00000355766.1:p.Met59Val
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.328A>G
  hgvsp: ENSP00000329102.5:p.Met110Val
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5987
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12068
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met110Val
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-226475498-T-TAAGTTTTTCAAGTGTTTTAAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475498
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475519
    reference: chr 1
allele count: 1
allele frequency: 8.31282835672009e-6
allele num: 120296
alternate allele: TAAGTTTTTCAAGTGTTTTAAG
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5988
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6743
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30638
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln104_Lys105insLeuLysThrLeuGluLysLeu
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP

1-226475502-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475502
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475502
    reference: chr 1
allele count: 1
allele frequency: 8.327365388138501e-6
allele num: 120086
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.160-4A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.193-4A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.208-4A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.478-4A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.109-4A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.313-4A>G
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5987
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6920
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3175
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30640
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
hgvs: c.313-4A>G
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

1-226475504-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475504
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475504
    reference: chr 1
allele count: 2
allele frequency: 1.666638889351844e-5
allele num: 120002
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.193-6G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.160-6G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.109-6G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.208-6G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.313-6G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.478-6G>A
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5988
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6908
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3219
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4015
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30636
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
hgvs: c.313-6G>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

1-226475506-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475506
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475507
    reference: chr 1
allele count: 1
allele frequency: 8.335000333400014e-6
allele num: 119976
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.478-9dupA
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.193-9dupA
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.208-9dupA
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.313-9dupA
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.109-9dupA
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.160-9dupA
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5986
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3177
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4014
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30635
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

1-226475507-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475507
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475508
    reference: chr 1
allele count: 3
allele frequency: 2.503839220137544e-5
allele num: 119816
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.208-10dupT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.478-10dupT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.109-10dupT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.193-10dupT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.160-10dupT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.313-10dupT
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6410
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30622
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10998
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3206
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS

1-226475507-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475507
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475506
    reference: chr 1
allele count: 36
allele frequency: 3.004607064165053e-4
allele num: 119816
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.478-10delT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.313-10delT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.109-10delT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.160-10delT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.208-10delT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.193-10delT
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7391
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6410
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6736
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10998
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3206
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: TA
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

1-226475508-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475508
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475508
    reference: chr 1
allele count: 1
allele frequency: 8.353521009105338e-6
allele num: 119710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.208-10T>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.478-10T>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.109-10T>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.160-10T>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.313-10T>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.193-10T>A
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6012
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10946
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-226475514-AAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475514
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475512
    reference: chr 1
allele count: 4
allele frequency: 3.341240936883959e-5
allele num: 119716
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.313-18_313-17delCT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.193-18_193-17delCT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.208-18_208-17delCT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.478-18_478-17delCT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.160-18_160-17delCT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.109-18_109-17delCT
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6685
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3177
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3214
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3976
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10938
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: AAG
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP

1-226475521-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475521
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475521
    reference: chr 1
allele count: 14
allele frequency: 1.171548117154812e-4
allele num: 119500
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.109-23A>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.160-23A>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.313-23A>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.193-23A>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.478-23A>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.208-23A>C
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6581
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6678
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3211
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10621
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3960
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30613
  bin: 9.75e1
  variant carriers: 14
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-226475530-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475530
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475530
    reference: chr 1
allele count: 3
allele frequency: 2.517031915964694e-5
allele num: 119188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.193-32C>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.313-32C>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.160-32C>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.478-32C>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.208-32C>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.109-32C>T
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

1-226475536-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475536
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475536
    reference: chr 1
allele count: 2
allele frequency: 1.680389850445303e-5
allele num: 119020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.478-38A>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.160-38A>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.109-38A>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.208-38A>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.193-38A>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.313-38A>T
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
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genotype quality: GenotypeQuality
  all individuals: 584
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 3207
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1876
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3768
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9202
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/1-226475539-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475539
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475539
    reference: chr 1
allele count: 1
allele frequency: 8.407883231317684e-6
allele num: 118936
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.193-41T>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.208-41T>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.478-41T>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.313-41T>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.109-41T>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.160-41T>G
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6616
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30598
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8707
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3205
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

1-226475543-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475543
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475543
    reference: chr 1
allele count: 1
allele frequency: 8.411843876177658e-6
allele num: 118880
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.109-45T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.208-45T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.160-45T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.193-45T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.478-45T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.313-45T>C
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5975
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30593
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8321
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3667
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP

1-226475546-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226475546
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226475546
    reference: chr 1
allele count: 1
allele frequency: 8.42133629764371e-6
allele num: 118746
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.478-48T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.208-48T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.109-48T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.313-48T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.193-48T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.160-48T>C
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5975
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1830
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3479
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6855
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

1-226483510-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483510
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483510
    reference: chr 1
allele count: 1
allele frequency: 8.351846593281774e-6
allele num: 119734
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1910A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.477+33A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1910A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.108+33A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1910A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.312+33A>G
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6810
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41721
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5858
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

1-226483516-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483516
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483516
    reference: chr 1
allele count: 8
allele frequency: 6.658676255160474e-5
allele num: 120144
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.108+27A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1904A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.312+27A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.477+27A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1904A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1904A>G
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6930
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21747
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

1-226483516-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483516
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483516
    reference: chr 1
allele count: 2
allele frequency: 1.664669063790118e-5
allele num: 120144
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1904A>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.477+27A>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.108+27A>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1904A>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1904A>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.312+27A>C
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3347
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD

1-226483519-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483519
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483519
    reference: chr 1
allele count: 1
allele frequency: 8.311032063961702e-6
allele num: 120322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1901T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.312+24T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1901T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.477+24T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.108+24T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1901T>C
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5987
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

1-226483523-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483523
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483523
    reference: chr 1
allele count: 3
allele frequency: 2.489419965148121e-5
allele num: 120510
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.108+20T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.312+20T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1897T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.477+20T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1897T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1897T>C
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45058
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6013
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD

1-226483553-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483553
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483553
    reference: chr 1
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.467T>C
  hgvsp: ENSP00000355773.1:p.Met156Thr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.302T>C
  hgvsp: ENSP00000329102.5:p.Met101Thr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1867T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1867T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.98T>C
  hgvsp: ENSP00000352515.2:p.Met33Thr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1867T>C
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met101Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: A
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-226483554-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483554
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483554
    reference: chr 1
allele count: 26
allele frequency: 2.144754425618267e-4
allele num: 121226
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.301A>G
  hgvsp: ENSP00000329102.5:p.Met101Val
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.466A>G
  hgvsp: ENSP00000355773.1:p.Met156Val
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.97A>G
  hgvsp: ENSP00000352515.2:p.Met33Val
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1866A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1866A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1866A>G
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7143
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 6093
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46820
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met101Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

1-226483557-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483557
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483557
    reference: chr 1
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.94G>A
  hgvsp: ENSP00000352515.2:p.Ala32Thr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1863G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.298G>A
  hgvsp: ENSP00000329102.5:p.Ala100Thr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1863G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.463G>A
  hgvsp: ENSP00000355773.1:p.Ala155Thr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1863G>A
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46828
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala100Thr
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

1-226483561-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483561
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483561
    reference: chr 1
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1859G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.294G>A
  hgvsp: ENST00000328205.5:c.294G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1859G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.90G>A
  hgvsp: ENST00000359525.2:c.90G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1859G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.459G>A
  hgvsp: ENST00000366808.1:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg98Arg
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

1-226483569-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483569
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483569
    reference: chr 1
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.286A>G
  hgvsp: ENSP00000329102.5:p.Asn96Asp
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1851A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.451A>G
  hgvsp: ENSP00000355773.1:p.Asn151Asp
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1851A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.82A>G
  hgvsp: ENSP00000352515.2:p.Asn28Asp
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1851A>G
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7153
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
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genotype quality: GenotypeQuality
  all individuals: 4
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genotype quality: GenotypeQuality
  all individuals: 6
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genotype quality: GenotypeQuality
  all individuals: 46881
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3325
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn96Asp
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/1-226483582-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483582
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483582
    reference: chr 1
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.438G>T
  hgvsp: ENSP00000355773.1:p.Arg146Ser
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1838G>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.273G>T
  hgvsp: ENSP00000329102.5:p.Arg91Ser
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1838G>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1838G>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.69G>T
  hgvsp: ENSP00000352515.2:p.Arg23Ser
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 58
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genotype depth: GenotypeDepth
  all individuals: 7148
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genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 23221
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genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 50
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genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 7
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1291
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
  all individuals: 95
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg91Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

1-226483595-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483595
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483595
    reference: chr 1
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.425A>G
  hgvsp: ENSP00000355773.1:p.Gln142Arg
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.260A>G
  hgvsp: ENSP00000329102.5:p.Gln87Arg
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1825A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.56A>G
  hgvsp: ENSP00000352515.2:p.Gln19Arg
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1825A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1825A>G
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 66
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
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genotype depth: GenotypeDepth
  all individuals: 78
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genotype depth: GenotypeDepth
  all individuals: 35
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genotype depth: GenotypeDepth
  all individuals: 127
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genotype depth: GenotypeDepth
  all individuals: 198
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genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 116
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln87Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

1-226483598-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483598
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483598
    reference: chr 1
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1822G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.53G>A
  hgvsp: ENSP00000352515.2:p.Arg18Lys
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1822G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.257G>A
  hgvsp: ENSP00000329102.5:p.Arg86Lys
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1822G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.422G>A
  hgvsp: ENSP00000355773.1:p.Arg141Lys
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24869
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genotype depth: GenotypeDepth
  all individuals: 50
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 66
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23222
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 726
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg86Lys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum

1-226483600-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483600
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483600
    reference: chr 1
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.420T>C
  hgvsp: ENST00000366808.1:c.420T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1820T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1820T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.51T>C
  hgvsp: ENST00000359525.2:c.51T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1820T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.255T>C
  hgvsp: ENST00000328205.5:c.255T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6090
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46828
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp85Asp
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/1-226483602-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483602
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483602
    reference: chr 1
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1818G>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.49G>T
  hgvsp: ENSP00000352515.2:p.Asp17Tyr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1818G>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.418G>T
  hgvsp: ENSP00000355773.1:p.Asp140Tyr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.253G>T
  hgvsp: ENSP00000329102.5:p.Asp85Tyr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1818G>T
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3326
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46849
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp85Tyr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

1-226483602-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483602
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483602
    reference: chr 1
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1818G>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.253G>C
  hgvsp: ENSP00000329102.5:p.Asp85His
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.49G>C
  hgvsp: ENSP00000352515.2:p.Asp17His
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1818G>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1818G>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.418G>C
  hgvsp: ENSP00000355773.1:p.Asp140His
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46849
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6090
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp85His
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

1-226483611-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483611
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483611
    reference: chr 1
allele count: 1
allele frequency: 8.25082508250825e-6
allele num: 121200
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1809G>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.244G>C
  hgvsp: ENSP00000329102.5:p.Asp82His
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.40G>C
  hgvsp: ENSP00000352515.2:p.Asp14His
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.409G>C
  hgvsp: ENSP00000355773.1:p.Asp137His
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1809G>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1809G>C
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24782
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3325
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp82His
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

1-226483639-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483639
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483639
    reference: chr 1
allele count: 1
allele frequency: 8.302062232258493e-6
allele num: 120452
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1781A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1781A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.12A>G
  hgvsp: ENST00000359525.2:c.12A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.216A>G
  hgvsp: ENST00000328205.5:c.216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1781A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.381A>G
  hgvsp: ENST00000366808.1:c.381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23081
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23972
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5991
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg72Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

1-226483646-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483646
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483646
    reference: chr 1
allele count: 1
allele frequency: 8.3558942478024e-6
allele num: 119676
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.5C>G
  hgvsp: ENSP00000352515.2:p.Pro2Arg
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1774C>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1774C>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.374C>G
  hgvsp: ENSP00000355773.1:p.Pro125Arg
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.209C>G
  hgvsp: ENSP00000329102.5:p.Pro70Arg
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1774C>G
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3321
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro70Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/1-226483658-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483658
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483658
    reference: chr 1
allele count: 1
allele frequency: 8.473570932262274e-6
allele num: 118014
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.4-11T>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1762T>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.208-11T>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1762T>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1762T>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.373-11T>G
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5548
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

1-226483673-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483673
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483673
    reference: chr 1
allele count: 1
allele frequency: 8.77470078270331e-6
allele num: 113964
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1747A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.208-26A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.4-26A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.373-26A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1747A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1747A>G
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9602
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3317
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4326
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2951
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27059
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4208
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

1-226483682-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483682
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483682
    reference: chr 1
allele count: 1
allele frequency: 8.967001434720229e-6
allele num: 111520
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.208-35G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1738G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1738G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.4-35G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1738G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.373-35G>A
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11743
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17314
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4179
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10573
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2783
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7159
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

1-226483683-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483683
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483683
    reference: chr 1
allele count: 8
allele frequency: 7.176818875033641e-5
allele num: 111470
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.208-36C>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1737C>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.373-36C>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1737C>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1737C>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.4-36C>T
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11842
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15594
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11704
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5245
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2731
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3323
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 425
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genotype quality: GenotypeQuality
  all individuals: 827
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17753
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

1-226483689-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483689
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483688
    reference: chr 1
allele count: 1
allele frequency: 9.156335268372187e-6
allele num: 109214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1730delG
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.373-43delG
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.208-43delG
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1730delG
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.4-43delG
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1730delG
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
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genotype depth: GenotypeDepth
  all individuals: 640
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7641
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7318
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 388
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 475
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genotype quality: GenotypeQuality
  all individuals: 1202
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genotype quality: GenotypeQuality
  all individuals: 10294
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3595
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TC
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

1-226483691-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483691
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483691
    reference: chr 1
allele count: 1
allele frequency: 9.237704615157226e-6
allele num: 108252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1729G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.208-44G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1729G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.373-44G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.4-44G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1729G>A
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6625
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8272
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4593
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3310
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9487
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-226483693-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483693
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483693
    reference: chr 1
allele count: 1
allele frequency: 9.300941255255032e-6
allele num: 107516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1727T>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1727T>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.373-46T>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1727T>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.4-46T>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.208-46T>A
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17027
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8309
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7337
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9156
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1912
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

1-226483694-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226483694
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226483694
    reference: chr 1
allele count: 1
allele frequency: 9.357513147305972e-6
allele num: 106866
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+1726A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+1726A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+1726A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.208-47A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.4-47A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.373-47A>G
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5388
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16986
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2487
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8848
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8285
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3694
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4591
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

1-226485374-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485374
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485374
    reference: chr 1
allele count: 1
allele frequency: 8.733014287211374e-6
allele num: 114508
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.207+46T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.372+46T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+46T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+46T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+46T>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.3+46T>C
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3116
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19091
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
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genotype quality: GenotypeQuality
  all individuals: 333
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2282
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

1-226485377-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485377
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485377
    reference: chr 1
allele count: 2
allele frequency: 1.747549062439928e-5
allele num: 114446
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.207+43A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+43A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+43A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+43A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.3+43A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.372+43A>G
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3555
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16301
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4563
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3479
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19675
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8185
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2373
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-226485395-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485395
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485395
    reference: chr 1
allele count: 1
allele frequency: 8.682967490969713e-6
allele num: 115168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+25T>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+25T>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.207+25T>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+25T>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.3+25T>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.372+25T>G
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16757
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6664
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 232
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genotype quality: GenotypeQuality
  all individuals: 56
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22068
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 86
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2825
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3458
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9437
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

1-226485397-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485397
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485397
    reference: chr 1
allele count: 4
allele frequency: 3.470776065528252e-5
allele num: 115248
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+23A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.372+23A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+23A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.207+23A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+23A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.3+23A>G
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3556
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
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genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 112
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9437
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genotype quality: GenotypeQuality
  all individuals: 1646
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genotype quality: GenotypeQuality
  all individuals: 4530
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

1-226485402-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485402
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485401
    reference: chr 1
allele count: 1
allele frequency: 8.646480017984679e-6
allele num: 115654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+17delT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+17delT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+17delT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.207+17delT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.3+17delT
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.372+17delT
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16857
  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 6655
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
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genotype depth: GenotypeDepth
  all individuals: 12104
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 139
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 314
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9436
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 89
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2764
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: GA
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD

1-226485415-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485415
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485415
    reference: chr 1
allele count: 3
allele frequency: 2.558591751100194e-5
allele num: 117252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.3+5G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159+5G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207+5G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192+5G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.207+5G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.372+5G>A
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3454
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24096
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3091
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
hgvs: c.207+5G>A
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/1-226485420-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485420
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485420
    reference: chr 1
allele count: 1
allele frequency: 8.461811843151855e-6
allele num: 118178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.372G>T
  hgvsp: ENSP00000355773.1:p.Met124Ile
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.192G>T
  hgvsp: ENSP00000418121.1:p.Met64Ile
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.207G>T
  hgvsp: ENSP00000418489.1:p.Met69Ile
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.3G>T
  hgvsp: ENSP00000352515.2:p.Met1?
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.207G>T
  hgvsp: ENSP00000329102.5:p.Met69Ile
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.159G>T
  hgvsp: ENSP00000355766.1:p.Met53Ile
  variant of: http://identifiers.org/hgnc/30830
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3093
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9435
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3455
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2342
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24926
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

1-226485422-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485422
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485422
    reference: chr 1
allele count: 2
allele frequency: 1.687023415885013e-5
allele num: 118552
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.157A>G
  hgvsp: ENSP00000355766.1:p.Met53Val
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.370A>G
  hgvsp: ENSP00000355773.1:p.Met124Val
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.190A>G
  hgvsp: ENSP00000418121.1:p.Met64Val
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.205A>G
  hgvsp: ENSP00000329102.5:p.Met69Val
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.205A>G
  hgvsp: ENSP00000418489.1:p.Met69Val
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: splice_region_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.1A>G
  hgvsp: ENSP00000352515.2:p.Met1?
  variant of: http://identifiers.org/hgnc/30830
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25248
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3095
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4549
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

1-226485424-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485424
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485424
    reference: chr 1
allele count: 1
allele frequency: 8.420910805712745e-6
allele num: 118752
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.188A>G
  hgvsp: ENSP00000418121.1:p.Glu63Gly
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.155A>G
  hgvsp: ENSP00000355766.1:p.Glu52Gly
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.203A>G
  hgvsp: ENSP00000329102.5:p.Glu68Gly
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.-2A>G
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.203A>G
  hgvsp: ENSP00000418489.1:p.Glu68Gly
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.368A>G
  hgvsp: ENSP00000355773.1:p.Glu123Gly
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25437
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4549
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9434
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu68Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

1-226485436-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485436
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485436
    reference: chr 1
allele count: 2
allele frequency: 1.668446342765617e-5
allele num: 119872
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.191G>A
  hgvsp: ENSP00000329102.5:p.Ser64Asn
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.356G>A
  hgvsp: ENSP00000355773.1:p.Ser119Asn
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.191G>A
  hgvsp: ENSP00000418489.1:p.Ser64Asn
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.-14G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.176G>A
  hgvsp: ENSP00000418121.1:p.Ser59Asn
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.143G>A
  hgvsp: ENSP00000355766.1:p.Ser48Asn
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3102
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4549
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser64Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-226485442-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485442
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485442
    reference: chr 1
allele count: 3
allele frequency: 2.496546444085682e-5
allele num: 120166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.185A>C
  hgvsp: ENSP00000418489.1:p.Asn62Thr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.170A>C
  hgvsp: ENSP00000418121.1:p.Asn57Thr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.137A>C
  hgvsp: ENSP00000355766.1:p.Asn46Thr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.185A>C
  hgvsp: ENSP00000329102.5:p.Asn62Thr
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.-20A>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.350A>C
  hgvsp: ENSP00000355773.1:p.Asn117Thr
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26549
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn62Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

1-226485443-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485443
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485443
    reference: chr 1
allele count: 5
allele frequency: 4.15973377703827e-5
allele num: 120200
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.-21A>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.349A>C
  hgvsp: ENSP00000355773.1:p.Asn117His
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.184A>C
  hgvsp: ENSP00000418489.1:p.Asn62His
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.184A>C
  hgvsp: ENSP00000329102.5:p.Asn62His
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.169A>C
  hgvsp: ENSP00000418121.1:p.Asn57His
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.136A>C
  hgvsp: ENSP00000355766.1:p.Asn46His
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12186
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 26607
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3111
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2346
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9434
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn62His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum

http://identifiers.org/exac.variant/1-226485449-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485449
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485449
    reference: chr 1
allele count: 15
allele frequency: 1.246261216350947e-4
allele num: 120360
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.178G>T
  hgvsp: ENSP00000329102.5:p.Gly60Cys
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.178G>T
  hgvsp: ENSP00000418489.1:p.Gly60Cys
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.130G>T
  hgvsp: ENSP00000355766.1:p.Gly44Cys
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.-27G>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.163G>T
  hgvsp: ENSP00000418121.1:p.Gly55Cys
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.343G>T
  hgvsp: ENSP00000355773.1:p.Gly115Cys
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26751
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8479
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4549
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3114
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly60Cys
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

1-226485458-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485458
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485458
    reference: chr 1
allele count: 20
allele frequency: 1.660384877214538e-4
allele num: 120454
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.169G>A
  hgvsp: ENSP00000329102.5:p.Val57Ile
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.154G>A
  hgvsp: ENSP00000418121.1:p.Val52Ile
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.169G>A
  hgvsp: ENSP00000418489.1:p.Val57Ile
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.-36G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.334G>A
  hgvsp: ENSP00000355773.1:p.Val112Ile
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.121G>A
  hgvsp: ENSP00000355766.1:p.Val41Ile
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3463
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26797
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8496
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val57Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

1-226485463-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485463
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485463
    reference: chr 1
allele count: 1
allele frequency: 8.301924386072691e-6
allele num: 120454
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.164C>G
  hgvsp: ENSP00000329102.5:p.Thr55Arg
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.329C>G
  hgvsp: ENSP00000355773.1:p.Thr110Arg
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.164C>G
  hgvsp: ENSP00000418489.1:p.Thr55Arg
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.116C>G
  hgvsp: ENSP00000355766.1:p.Thr39Arg
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.149C>G
  hgvsp: ENSP00000418121.1:p.Thr50Arg
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.-41C>G
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3461
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26809
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr55Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

1-226485464-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485464
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485464
    reference: chr 1
allele count: 1
allele frequency: 8.302200083022e-6
allele num: 120450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.-42A>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.163A>T
  hgvsp: ENSP00000329102.5:p.Thr55Ser
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.148A>T
  hgvsp: ENSP00000418121.1:p.Thr50Ser
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.163A>T
  hgvsp: ENSP00000418489.1:p.Thr55Ser
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.115A>T
  hgvsp: ENSP00000355766.1:p.Thr39Ser
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.328A>T
  hgvsp: ENSP00000355773.1:p.Thr110Ser
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8499
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2342
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26805
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr55Ser
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-226485479-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485479
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485479
    reference: chr 1
allele count: 7
allele frequency: 5.817045605637549e-5
allele num: 120336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.148A>C
  hgvsp: ENSP00000418489.1:p.Ser50Arg
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.-57A>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.313A>C
  hgvsp: ENSP00000355773.1:p.Ser105Arg
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.100A>C
  hgvsp: ENSP00000355766.1:p.Ser34Arg
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.148A>C
  hgvsp: ENSP00000329102.5:p.Ser50Arg
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.133A>C
  hgvsp: ENSP00000418121.1:p.Ser45Arg
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12206
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12597
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8476
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4548
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser50Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-226485495-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485495
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485495
    reference: chr 1
allele count: 6
allele frequency: 5.011191661377075e-5
allele num: 119732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.-73G>A
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.117G>A
  hgvsp: ENST00000460719.1:c.117G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.132G>A
  hgvsp: ENST00000481685.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.132G>A
  hgvsp: ENST00000328205.5:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.84G>A
  hgvsp: ENST00000366801.1:c.84G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.297G>A
  hgvsp: ENST00000366808.1:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25955
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8447
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr44Thr
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

1-226485496-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485496
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485496
    reference: chr 1
allele count: 1
allele frequency: 8.354777261638205e-6
allele num: 119692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.-74C>T
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.83C>T
  hgvsp: ENSP00000355766.1:p.Thr28Met
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.296C>T
  hgvsp: ENSP00000355773.1:p.Thr99Met
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.131C>T
  hgvsp: ENSP00000329102.5:p.Thr44Met
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.131C>T
  hgvsp: ENSP00000418489.1:p.Thr44Met
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.116C>T
  hgvsp: ENSP00000418121.1:p.Thr39Met
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3087
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr44Met
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

1-226485497-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 226485497
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 226485497
    reference: chr 1
allele count: 1
allele frequency: 8.358827757995218e-6
allele num: 119634
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000352515
  ensembl transcript: ENST00000359525
  gene symbol: LIN9
  hgvsc: ENST00000359525.2:c.-75A>C
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418121
  ensembl transcript: ENST00000460719
  gene symbol: LIN9
  hgvsc: ENST00000460719.1:c.115A>C
  hgvsp: ENSP00000418121.1:p.Thr39Pro
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000329102
  ensembl transcript: ENST00000328205
  gene symbol: LIN9
  hgvsc: ENST00000328205.5:c.130A>C
  hgvsp: ENSP00000329102.5:p.Thr44Pro
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000418489
  ensembl transcript: ENST00000481685
  gene symbol: LIN9
  hgvsc: ENST00000481685.1:c.130A>C
  hgvsp: ENSP00000418489.1:p.Thr44Pro
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355766
  ensembl transcript: ENST00000366801
  gene symbol: LIN9
  hgvsc: ENST00000366801.1:c.82A>C
  hgvsp: ENSP00000355766.1:p.Thr28Pro
  variant of: http://identifiers.org/hgnc/30830
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183814
  ensembl protein: ENSP00000355773
  ensembl transcript: ENST00000366808
  gene symbol: LIN9
  hgvsc: ENST00000366808.1:c.295A>C
  hgvsp: ENSP00000355773.1:p.Thr99Pro
  variant of: http://identifiers.org/hgnc/30830
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3457
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr44Pro
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30631
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3198
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9988
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65854
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.042253521126761e-5
allele num: 14200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.29e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.09e-1

DP
type: SiteQuality
SIO_000300: 2.655881e6

GenotypeQuality
all individuals: 3098
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11038
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3207
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3842
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.665777896280495e-5
allele num: 15002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.019e0

QD
type: SiteQuality
SIO_000300: 1.396e1

DP
type: SiteQuality
SIO_000300: 2.671808e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.887e1

VQSLOD
type: SiteQuality
SIO_000300: -7.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3966
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505797319680771e-5
allele num: 66410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

QD
type: SiteQuality
SIO_000300: 1.401e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

DP
type: SiteQuality
SIO_000300: 2.685365e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

FS
type: SiteQuality
SIO_000300: 1.178e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.95e-1

GenotypeQuality
all individuals: 3159
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4006
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3139
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11929
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.301991429291656e-5
allele num: 15868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.291e1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

DP
type: SiteQuality
SIO_000300: 2.689246e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.271e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

GenotypeQuality
all individuals: 379
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3213
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3167
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.515632515632516e-5
allele num: 66528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 5.22e-1

DP
type: SiteQuality
SIO_000300: 2.693425e6

QD
type: SiteQuality
SIO_000300: 1.201e1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1953
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30635
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3162
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.21e-1

FS
type: SiteQuality
SIO_000300: 2.713e0

VQSLOD
type: SiteQuality
SIO_000300: 3.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e0

DP
type: SiteQuality
SIO_000300: 2.693421e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.3e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30637
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12044
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3182
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501726986033939e-5
allele num: 66590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16224
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.21e-1

FS
type: SiteQuality
SIO_000300: 9.818e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.8e-2

DP
type: SiteQuality
SIO_000300: 2.696359e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-1

QD
type: SiteQuality
SIO_000300: 1.3e1

GenotypeQuality
all individuals: 30637
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3217
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1778
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1967
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12083
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3177
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66600
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.46e1

MQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.947e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

DP
type: SiteQuality
SIO_000300: 2.698693e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.728e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.72e-1

GenotypeQuality
all individuals: 3220
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
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variant carriers: 0

GenotypeQuality
all individuals: 3209
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4149
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3183
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

DP
type: SiteQuality
SIO_000300: 2.702291e6

MQRankSum
type: SiteQuality
SIO_000300: -3.49e-1

FS
type: SiteQuality
SIO_000300: 1.7351e1

QD
type: SiteQuality
SIO_000300: 1.037e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.288e0

GenotypeQuality
all individuals: 3221
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3209
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30640
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12332
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1781
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4152
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.297e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.0776e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.13e-1

QD
type: SiteQuality
SIO_000300: 1.384e1

DP
type: SiteQuality
SIO_000300: 2.702158e6

MQ
type: SiteQuality
SIO_000300: 5.983e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.41e-1

GenotypeQuality
all individuals: 4142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1970
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variant carriers: 0

GenotypeQuality
all individuals: 3222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3180
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: -1.625e0

QD
type: SiteQuality
SIO_000300: 1.06e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.518e0

FS
type: SiteQuality
SIO_000300: 1.2413e1

MQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.701686e6

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3221
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1781
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3175
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4116
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3203
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30640
bin: 9.75e1
variant carriers: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.820167455405897e-4
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

VQSLOD
type: SiteQuality
SIO_000300: 8.05e-1

DP
type: SiteQuality
SIO_000300: 2.69897e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.382e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

GenotypeQuality
all individuals: 11475
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1780
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4036
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3199
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508568670045861e-5
allele num: 66288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-1

QD
type: SiteQuality
SIO_000300: 1.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.381e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.623e0

FS
type: SiteQuality
SIO_000300: 2.5e0

VQSLOD
type: SiteQuality
SIO_000300: -6.161e-1

MQ
type: SiteQuality
SIO_000300: 5.434e1

DP
type: SiteQuality
SIO_000300: 2.689268e6

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3221
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1782
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11304
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4024
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511030522816561e-5
allele num: 66180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.727e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.694e0

DP
type: SiteQuality
SIO_000300: 2.686874e6

VQSLOD
type: SiteQuality
SIO_000300: -4.668e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.94e-1

MQ
type: SiteQuality
SIO_000300: 5.351e1

QD
type: SiteQuality
SIO_000300: 9.3e-1

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11242
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3195
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1780
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3175
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.024803387779794e-5
allele num: 66120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.042e0

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

FS
type: SiteQuality
SIO_000300: 1.501e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

VQSLOD
type: SiteQuality
SIO_000300: -1.455e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.18e-1

DP
type: SiteQuality
SIO_000300: 2.686046e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.013e1

GenotypeQuality
all individuals: 1949
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11210
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3219
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.171234481143125e-4
allele num: 8538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.685376e6

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.271e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 4.526e1

FS
type: SiteQuality
SIO_000300: 9.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

QD
type: SiteQuality
SIO_000300: 1.571e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.56e-1

GenotypeQuality
all individuals: 154
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3964
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3158
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1773
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514554872323024e-5
allele num: 66026
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.01667344448963e-4
allele num: 9836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.515610791148833e-4
allele num: 6598
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.689105e6

VQSLOD
type: SiteQuality
SIO_000300: 5.22e0

QD
type: SiteQuality
SIO_000300: 1.119e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 30622
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 1919
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3964
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 1

South Asian
type: Population
allele count: 6
allele frequency: 3.650967506389193e-4
allele num: 16434
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.728344855632371e-3
allele num: 9836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.060188410626117e-4
allele num: 66026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.038948850305022e-4
allele num: 8524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

DP
type: SiteQuality
SIO_000300: 2.689105e6

MQRankSum
type: SiteQuality
SIO_000300: 3.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

QD
type: SiteQuality
SIO_000300: 1.119e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1917
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3207
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30587
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3154
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3959
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1773
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.689607229753215e-5
allele num: 11508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66002
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.687527e6

QD
type: SiteQuality
SIO_000300: 1.303e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.894e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.75e-1

GenotypeQuality
all individuals: 1930
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30611
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3171
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.060789720900633e-5
allele num: 65998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

QD
type: SiteQuality
SIO_000300: 1.486e1

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

FS
type: SiteQuality
SIO_000300: 7.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

MQ
type: SiteQuality
SIO_000300: 5.987e1

DP
type: SiteQuality
SIO_000300: 2.679821e6

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3170
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3160
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 12
allele frequency: 1.231274368971886e-3
allele num: 9746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.742767514813524e-4
allele num: 11476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65886
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.598e0

QD
type: SiteQuality
SIO_000300: 1.614e1

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 6.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e0

DP
type: SiteQuality
SIO_000300: 2.675053e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

GenotypeQuality
all individuals: 3165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9732
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3848
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30602
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1776
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3144
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.727526618956188e-5
allele num: 11458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520727516043675e-5
allele num: 65758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.517450682852807e-4
allele num: 6590
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.826e0

FS
type: SiteQuality
SIO_000300: 6.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

QD
type: SiteQuality
SIO_000300: 1.34e1

DP
type: SiteQuality
SIO_000300: 2.663411e6

GenotypeQuality
all individuals: 295
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3133
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1774
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3158
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30597
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65676
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.369668246445498e-4
allele num: 8440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9576
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.003e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.65e-1

QD
type: SiteQuality
SIO_000300: 9.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.466e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.13e-1

DP
type: SiteQuality
SIO_000300: 2.655982e6

GenotypeQuality
all individuals: 140
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3155
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523832744118006e-5
allele num: 65624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.311e-1

QD
type: SiteQuality
SIO_000300: 1.495e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.757e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.43e-1

DP
type: SiteQuality
SIO_000300: 2.651721e6

GenotypeQuality
all individuals: 3205
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3105
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3153
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52452968259292e-5
allele num: 65594
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.702e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.656e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e0

QD
type: SiteQuality
SIO_000300: 1.228e1

FS
type: SiteQuality
SIO_000300: 6.896e0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 2.6488e6

GenotypeQuality
all individuals: 30594
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 413
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3082
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1773
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3206
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.100536847242558e-5
allele num: 16392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.59e-1

DP
type: SiteQuality
SIO_000300: 2.645747e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 2.049e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.653e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.03e-1

GenotypeQuality
all individuals: 3341
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 822
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
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variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.192717364379489e-5
allele num: 16148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.26e-1

QD
type: SiteQuality
SIO_000300: 1.745e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

DP
type: SiteQuality
SIO_000300: 1.661323e6

VQSLOD
type: SiteQuality
SIO_000300: -4.865e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3347
bin: 9.75e1
variant carriers: 8

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 287
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 244
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variant carriers: 0

GenotypeQuality
all individuals: 1289
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.570481179783787e-5
allele num: 66046
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73973556019485e-4
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16214
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

DP
type: SiteQuality
SIO_000300: 1.679959e6

QD
type: SiteQuality
SIO_000300: 1.498e1

GenotypeQuality
all individuals: 43838
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.028192471913515e-5
allele num: 66046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16214
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e0

DP
type: SiteQuality
SIO_000300: 1.679959e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.498e1

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
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variant carriers: 0

GenotypeQuality
all individuals: 44554
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variant carriers: 0

GenotypeQuality
all individuals: 1325
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variant carriers: 0

GenotypeQuality
all individuals: 3336
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512081531436175e-5
allele num: 66134
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-1

DP
type: SiteQuality
SIO_000300: 1.686985e6

VQSLOD
type: SiteQuality
SIO_000300: 5.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

FS
type: SiteQuality
SIO_000300: 1.401e0

QD
type: SiteQuality
SIO_000300: 1.181e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.64e-1

GenotypeQuality
all individuals: 335
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 539
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variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
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variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.492433061699651e-4
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66250
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.65e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.693137e6

FS
type: SiteQuality
SIO_000300: 7.6e-1

QD
type: SiteQuality
SIO_000300: 1.463e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 1309
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variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.368e1

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.368e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.126e0

MQRankSum
type: SiteQuality
SIO_000300: -8.2e-2

FS
type: SiteQuality
SIO_000300: 1.1459e1

DP
type: SiteQuality
SIO_000300: 1.713598e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1307
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variant carriers: 0

GenotypeQuality
all individuals: 1295
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variant carriers: 0

GenotypeQuality
all individuals: 796
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variant carriers: 0

GenotypeQuality
all individuals: 279
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variant carriers: 0

GenotypeQuality
all individuals: 3351
bin: 9.75e1
variant carriers: 26

South Asian
type: Population
allele count: 8
allele frequency: 4.85201358563804e-4
allele num: 16488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.551173539828321e-4
allele num: 66636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-2

MQ
type: SiteQuality
SIO_000300: 5.978e1

MQRankSum
type: SiteQuality
SIO_000300: 4.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.08e-1

QD
type: SiteQuality
SIO_000300: 1.328e1

VQSLOD
type: SiteQuality
SIO_000300: 3.16e0

DP
type: SiteQuality
SIO_000300: 1.714688e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
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variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.487e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.713985e6

QD
type: SiteQuality
SIO_000300: 7.3e-1

GenotypeQuality
all individuals: 1311
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
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GenotypeQuality
all individuals: 46842
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3326
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
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South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

DP
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MQRankSum
type: SiteQuality
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QD
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: 9.24e-1

FS
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ClippingRankSum
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SIO_000300: -2.95e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.0e-4

VQSLOD
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BaseQRankSum
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FS
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MQ
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66674
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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South Asian
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allele num: 16498
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
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Other
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ClippingRankSum
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MQ
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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QD
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
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Latino
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allele frequency: 0.0e0
allele num: 11562
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South Asian
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allele frequency: 6.062075654704171e-5
allele num: 16496
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
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DP
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SIO_000300: 1.714537e6

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.8e-1

MQ
type: SiteQuality
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VQSLOD
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SIO_000300: 8.24e-1

InbreedingCoeff
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SIO_000300: 0.0e0

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e0

ClippingRankSum
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SIO_000300: -1.517e0

DP
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SIO_000300: 1.714452e6

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 4.06e0

QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.887e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10346
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.500240038406145e-5
allele num: 66656
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele num: 16494
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
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MQRankSum
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DP
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SIO_000300: 1.714114e6

QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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Latino
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East Asian
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allele num: 8652
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66658
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BaseQRankSum
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DP
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VQSLOD
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FS
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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QD
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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African
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allele frequency: 0.0e0
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Latino
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European (Finnish)
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East Asian
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European (Non-Finnish)
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allele num: 66658
num of homozygotes: 0

Other
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MQ
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VQSLOD
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MQRankSum
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FS
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ReadPosRankSum
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DP
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ClippingRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 9.676795045480937e-5
allele num: 10334
num of homozygotes: 0

East Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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Latino
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South Asian
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InbreedingCoeff
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ReadPosRankSum
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MQ
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MQRankSum
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DP
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FS
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VQSLOD
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BaseQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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East Asian
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African
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European (Non-Finnish)
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South Asian
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Latino
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InbreedingCoeff
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DP
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QD
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MQ
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ClippingRankSum
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ReadPosRankSum
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FS
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MQRankSum
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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Latino
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East Asian
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Other
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European (Non-Finnish)
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VQSLOD
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SIO_000300: -7.462e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

DP
type: SiteQuality
SIO_000300: 1.686135e6

QD
type: SiteQuality
SIO_000300: 6.96e0

GenotypeQuality
all individuals: 763
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3319
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41751
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3856
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9890
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.844861135680169e-5
allele num: 11306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.34e0

FS
type: SiteQuality
SIO_000300: 5.481e0

DP
type: SiteQuality
SIO_000300: 1.648109e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.436e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.485e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.249e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
all individuals: 135
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.313131313131313e-5
allele num: 15840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7954
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62386
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.457e0

FS
type: SiteQuality
SIO_000300: 5.511e0

MQRankSum
type: SiteQuality
SIO_000300: -1.701e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 1.467628e6

QD
type: SiteQuality
SIO_000300: 1.164e1

MQ
type: SiteQuality
SIO_000300: 5.797e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.38e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.725e0

GenotypeQuality
all individuals: 479
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5257
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3315
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 697
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.64306135191088e-5
allele num: 60862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10712
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 5.58e0

MQRankSum
type: SiteQuality
SIO_000300: -7.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.336598e6

VQSLOD
type: SiteQuality
SIO_000300: -1.949e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

GenotypeQuality
all individuals: 597
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4178
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1798
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10679
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variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7153
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.315140555646885e-4
allele num: 60830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15640
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

QD
type: SiteQuality
SIO_000300: 1.158e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.68e-1

DP
type: SiteQuality
SIO_000300: 1.333856e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

GenotypeQuality
all individuals: 2153
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3310
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.683048337148243e-5
allele num: 59416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.197e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.766e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

DP
type: SiteQuality
SIO_000300: 1.262647e6

QD
type: SiteQuality
SIO_000300: 1.052e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQ
type: SiteQuality
SIO_000300: 6.03e1

GenotypeQuality
all individuals: 7544
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4353
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2044
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8578
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3478
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58824
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.334044823906083e-4
allele num: 7496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9134
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

QD
type: SiteQuality
SIO_000300: 1.35e1

VQSLOD
type: SiteQuality
SIO_000300: -1.094e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.771e0

DP
type: SiteQuality
SIO_000300: 1.2504e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.069e0

GenotypeQuality
all individuals: 1520
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4605
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7678
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4929
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9038
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.715265866209263e-5
allele num: 58300
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e0

MQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.058e0

DP
type: SiteQuality
SIO_000300: 1.239738e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.801e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

QD
type: SiteQuality
SIO_000300: 1.487e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.725030188028291e-5
allele num: 57970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-2

MQ
type: SiteQuality
SIO_000300: 5.932e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

DP
type: SiteQuality
SIO_000300: 1.234752e6

QD
type: SiteQuality
SIO_000300: 1.584e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 3518
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4618
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.722958827634333e-5
allele num: 11464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12086
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 1.949886e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

MQ
type: SiteQuality
SIO_000300: 6.083e1

VQSLOD
type: SiteQuality
SIO_000300: -4.723e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e0

QD
type: SiteQuality
SIO_000300: 3.43e1

GenotypeQuality
all individuals: 901
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
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variant carriers: 0

GenotypeQuality
all individuals: 9441
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variant carriers: 2

GenotypeQuality
all individuals: 3088
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.659200265472043e-4
allele num: 12054
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.747e1

DP
type: SiteQuality
SIO_000300: 1.953591e6

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 6.037e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.54e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3076
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variant carriers: 0

GenotypeQuality
all individuals: 905
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GenotypeQuality
all individuals: 1647
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GenotypeQuality
all individuals: 131
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.037293039704228e-5
allele num: 12442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65002
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.28e-1

QD
type: SiteQuality
SIO_000300: 1.832e1

DP
type: SiteQuality
SIO_000300: 1.973401e6

FS
type: SiteQuality
SIO_000300: 5.405e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.704e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2345
bin: 9.25e1
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GenotypeQuality
all individuals: 22330
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537941004583064e-5
allele num: 65022
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.94521892794031e-4
allele num: 10186
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

QD
type: SiteQuality
SIO_000300: 1.494e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 1.976124e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

GenotypeQuality
all individuals: 182
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3451
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variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.535673700052213e-5
allele num: 65118
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

DP
type: SiteQuality
SIO_000300: 1.981555e6

VQSLOD
type: SiteQuality
SIO_000300: 3.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e0

MQRankSum
type: SiteQuality
SIO_000300: 9.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e-1

FS
type: SiteQuality
SIO_000300: 1.789e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.38e-1

MQ
type: SiteQuality
SIO_000300: 6.037e1

QD
type: SiteQuality
SIO_000300: 1.143e1

GenotypeQuality
all individuals: 4537
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13894
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.948937828883259e-4
allele num: 10262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526904049349539e-5
allele num: 65492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.354e1

VQSLOD
type: SiteQuality
SIO_000300: 5.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.578e0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

DP
type: SiteQuality
SIO_000300: 2.001625e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520727516043675e-5
allele num: 65758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.033e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.457e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 2.011986e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.34e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

GenotypeQuality
all individuals: 9435
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 235
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GenotypeQuality
all individuals: 31
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.94325689856199e-4
allele num: 10292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.391999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.86e0

VQSLOD
type: SiteQuality
SIO_000300: -5.337e-1

QD
type: SiteQuality
SIO_000300: 1.717e1

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

DP
type: SiteQuality
SIO_000300: 2.015249e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1415
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3460
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 3093
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variant carriers: 0

GenotypeQuality
all individuals: 8410
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1650
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GenotypeQuality
all individuals: 219
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517450682852807e-5
allele num: 65900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

VQSLOD
type: SiteQuality
SIO_000300: 7.29e-1

FS
type: SiteQuality
SIO_000300: 3.067e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.157e1

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.79e-1

DP
type: SiteQuality
SIO_000300: 2.017639e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.46e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.022152376922845e-5
allele num: 66178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.926e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

FS
type: SiteQuality
SIO_000300: 1.142e0

DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.49e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.91e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509433962264151e-5
allele num: 66250
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.701202949165696e-5
allele num: 10308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.034099e6

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.92e-1

FS
type: SiteQuality
SIO_000300: 2.197e0

VQSLOD
type: SiteQuality
SIO_000300: 9.92e-1

QD
type: SiteQuality
SIO_000300: 1.291e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 72
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GenotypeQuality
all individuals: 55
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variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.601005722212589e-4
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.260956674179814e-5
allele num: 15972
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Other
type: Population
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66250
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.179e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

DP
type: SiteQuality
SIO_000300: 2.03454e6

FS
type: SiteQuality
SIO_000300: 5.199e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.699321047526673e-5
allele num: 10310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16094
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.111996138064205e-4
allele num: 66288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.037274e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.54e-1

QD
type: SiteQuality
SIO_000300: 1.14e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.245e0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.52e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9435
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 4549
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2343
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3115
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 2.865761689291101e-4
allele num: 66300
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

DP
type: SiteQuality
SIO_000300: 2.038882e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.31e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2342
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4551
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3117
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1648
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8498
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9418
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66300
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

MQRankSum
type: SiteQuality
SIO_000300: 7.03e-1

DP
type: SiteQuality
SIO_000300: 2.037253e6

VQSLOD
type: SiteQuality
SIO_000300: -7.185e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 7.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.618e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.48e0

QD
type: SiteQuality
SIO_000300: 1.324e1

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4550
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3117
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3461
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9417
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 570
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1648
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 3.461e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.074e0

VQSLOD
type: SiteQuality
SIO_000300: 9.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.75e-1

QD
type: SiteQuality
SIO_000300: 1.24e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.037231e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e-1

GenotypeQuality
all individuals: 1647
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3459
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9423
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2342
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26654
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66266
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.343509555721023e-4
allele num: 16116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.084e1

FS
type: SiteQuality
SIO_000300: 1.9104e1

VQSLOD
type: SiteQuality
SIO_000300: -2.836e0

MQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.017e0

DP
type: SiteQuality
SIO_000300: 2.036166e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3092
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4532
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3454
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9420
bin: 9.75e1
variant carriers: 6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51267622678042e-5
allele num: 66108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.340277777777778e-4
allele num: 11520
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.724e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.255e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

DP
type: SiteQuality
SIO_000300: 2.028599e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 4531
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8442
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9414
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25915
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15708
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512996641147457e-5
allele num: 66094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.763e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.01e-1

QD
type: SiteQuality
SIO_000300: 1.329e1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

FS
type: SiteQuality
SIO_000300: 5.292e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.05e-1

DP
type: SiteQuality
SIO_000300: 2.027501e6

VQSLOD
type: SiteQuality
SIO_000300: -4.923e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4