2-38812971-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38812971
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38812971
    reference: chr 2
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.361A>G
  hgvsp: ENSP00000476852.1:p.Ile121Val
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.361A>G
  hgvsp: ENSP00000386575.1:p.Ile121Val
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.361A>G
  hgvsp: ENSP00000390625.3:p.Ile121Val
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.346A>G
  hgvsp: ENSP00000387088.1:p.Ile116Val
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.361A>G
  hgvsp: ENSP00000351136.4:p.Ile121Val
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.346A>G
  hgvsp: ENSP00000386695.1:p.Ile116Val
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.178A>G
  hgvsp: ENSP00000396669.1:p.Ile60Val
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.361A>G
  hgvsp: ENSP00000368195.3:p.Ile121Val
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.165A>G
  hgvsp: ENSP00000272249.3:p.Ile56Val
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3351
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile116Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

2-38812976-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38812976
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38812976
    reference: chr 2
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.160A>G
  hgvsp: ENSP00000272249.3:p.Glu54Gly
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.356A>G
  hgvsp: ENSP00000368195.3:p.Glu119Gly
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.356A>G
  hgvsp: ENSP00000386575.1:p.Glu119Gly
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.356A>G
  hgvsp: ENSP00000476852.1:p.Glu119Gly
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.356A>G
  hgvsp: ENSP00000351136.4:p.Glu119Gly
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.341A>G
  hgvsp: ENSP00000387088.1:p.Glu114Gly
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.356A>G
  hgvsp: ENSP00000390625.3:p.Glu119Gly
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.173A>G
  hgvsp: ENSP00000396669.1:p.Glu58Gly
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.341A>G
  hgvsp: ENSP00000386695.1:p.Glu114Gly
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu114Gly
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

2-38813003-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38813003
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38813003
    reference: chr 2
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.329T>C
  hgvsp: ENSP00000386575.1:p.Phe110Ser
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.314T>C
  hgvsp: ENSP00000387088.1:p.Phe105Ser
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.329T>C
  hgvsp: ENSP00000368195.3:p.Phe110Ser
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.329T>C
  hgvsp: ENSP00000390625.3:p.Phe110Ser
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.314T>C
  hgvsp: ENSP00000386695.1:p.Phe105Ser
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.329T>C
  hgvsp: ENSP00000476852.1:p.Phe110Ser
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.329T>C
  hgvsp: ENSP00000351136.4:p.Phe110Ser
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.133T>C
  hgvsp: ENSP00000272249.3:p.Phe45Ser
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.146T>C
  hgvsp: ENSP00000396669.1:p.Phe49Ser
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27226
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7902
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe105Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

2-38813005-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38813005
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38813005
    reference: chr 2
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.312A>G
  hgvsp: ENST00000409636.1:c.312A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.131A>G
  hgvsp: ENST00000272249.3:c.131A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.327A>G
  hgvsp: ENST00000449105.3:c.327A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.327A>G
  hgvsp: ENST00000358367.4:c.327A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.327A>G
  hgvsp: ENST00000409328.1:c.327A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.327A>G
  hgvsp: ENST00000378915.3:c.327A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.327A>G
  hgvsp: ENST00000608859.1:c.327A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.312A>G
  hgvsp: ENST00000410076.1:c.312A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.144A>G
  hgvsp: ENST00000425682.1:c.144A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7902
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro104Pro
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP

2-38813016-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38813016
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38813016
    reference: chr 2
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.133A>T
  hgvsp: ENSP00000396669.1:p.Met45Leu
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.316A>T
  hgvsp: ENSP00000351136.4:p.Met106Leu
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.316A>T
  hgvsp: ENSP00000476852.1:p.Met106Leu
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.316A>T
  hgvsp: ENSP00000386575.1:p.Met106Leu
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.120A>T
  hgvsp: ENSP00000272249.3:p.Met41Leu
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.301A>T
  hgvsp: ENSP00000386695.1:p.Met101Leu
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.316A>T
  hgvsp: ENSP00000390625.3:p.Met106Leu
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.316A>T
  hgvsp: ENSP00000368195.3:p.Met106Leu
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.301A>T
  hgvsp: ENSP00000387088.1:p.Met101Leu
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29798
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met101Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

2-38813030-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38813030
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38813031
    reference: chr 2
allele count: 3
allele frequency: 2.476064707824365e-5
allele num: 121160
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.294-8dupC
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.113-8dupC
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.126-8dupC
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.309-8dupC
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.309-8dupC
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.309-8dupC
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.309-8dupC
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.294-8dupC
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.309-8dupC
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 8.75e1
  variant carriers: 0
hgvs: c.294-8dupC
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ

2-38813033-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38813033
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38813033
    reference: chr 2
allele count: 2
allele frequency: 1.651036851142517e-5
allele num: 121136
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.309-10C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.294-10C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.113-10C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.309-10C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.309-10C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.309-10C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.309-10C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.126-10C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.294-10C>G
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD

2-38813041-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38813041
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38813041
    reference: chr 2
allele count: 2
allele frequency: 1.651500388102591e-5
allele num: 121102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.309-18C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.309-18C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.294-18C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.309-18C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.309-18C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.113-18C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.309-18C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.294-18C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.126-18C>A
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29380
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1862
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-38813045-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38813045
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38813045
    reference: chr 2
allele count: 69
allele frequency: 5.701160062134383e-4
allele num: 121028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.309-22T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.294-22T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.126-22T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.309-22T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.309-22T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.113-22T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.309-22T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.294-22T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.309-22T>A
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7751
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 26485
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15474
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8489
  bin: 9.75e1
  variant carriers: 69
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

2-38813046-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38813046
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38813046
    reference: chr 2
allele count: 2
allele frequency: 1.652619401751776e-5
allele num: 121020
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.309-23T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.113-23T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.294-23T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.309-23T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.309-23T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.294-23T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.126-23T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.309-23T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.309-23T>C
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD

2-38813048-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38813048
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38813048
    reference: chr 2
allele count: 1
allele frequency: 8.263370132874991e-6
allele num: 121016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.309-25G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.113-25G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.309-25G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.294-25G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.309-25G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.309-25G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.309-25G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.294-25G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.126-25G>A
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

2-38813055-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38813055
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38813055
    reference: chr 2
allele count: 1
allele frequency: 8.267605866693123e-6
allele num: 120954
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.309-32T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.294-32T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.309-32T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.309-32T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.309-32T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.126-32T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.294-32T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.309-32T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.113-32T>C
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3272
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-38813060-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38813060
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38813060
    reference: chr 2
allele count: 3
allele frequency: 2.481800132362674e-5
allele num: 120880
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.113-37C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.126-37C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.309-37C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.309-37C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.309-37C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.294-37C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.309-37C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.294-37C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.309-37C>G
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7681
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27489
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

2-38813068-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38813068
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38813068
    reference: chr 2
allele count: 1
allele frequency: 8.292699107705576e-6
allele num: 120588
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.309-45G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.113-45G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.309-45G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.294-45G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.126-45G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.294-45G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.309-45G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.309-45G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.309-45G>A
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4321
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP

2-38813069-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38813069
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38813069
    reference: chr 2
allele count: 1
allele frequency: 8.295726041943191e-6
allele num: 120544
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.309-46C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.309-46C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.126-46C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.309-46C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.294-46C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.309-46C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.309-46C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.294-46C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.113-46C>T
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25804
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD

2-38813075-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38813075
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38813075
    reference: chr 2
allele count: 14
allele frequency: 1.162076464631373e-4
allele num: 120474
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.309-52T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.126-52T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.309-52T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.309-52T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.113-52T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.294-52T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.309-52T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.294-52T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.309-52T>C
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25229
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14718
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7346
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24506
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-38818621-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818621
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818621
    reference: chr 2
allele count: 1
allele frequency: 8.29655195300833e-6
allele num: 120532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.308+51C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.308+51C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.125+51C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.308+51C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.308+51C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.308+51C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.293+51C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.293+51C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.112+51C>A
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43932
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8422
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

2-38818632-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818632
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818632
    reference: chr 2
allele count: 1
allele frequency: 8.29324929507381e-6
allele num: 120580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.308+40G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.308+40G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.125+40G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.293+40G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.308+40G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.308+40G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.308+40G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.112+40G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.293+40G>A
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-38818632-CCA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818632
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818630
    reference: chr 2
allele count: 5
allele frequency: 4.146624647536905e-5
allele num: 120580
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.308+38_308+39delTG
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.308+38_308+39delTG
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.308+38_308+39delTG
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.112+38_112+39delTG
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.293+38_293+39delTG
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.293+38_293+39delTG
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.308+38_308+39delTG
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.125+38_125+39delTG
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.308+38_308+39delTG
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: CCA
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-38818643-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818643
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818643
    reference: chr 2
allele count: 5
allele frequency: 4.145043357153516e-5
allele num: 120626
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.112+29T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.293+29T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.308+29T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.308+29T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.308+29T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.308+29T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.293+29T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.125+29T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.308+29T>G
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/2-38818644-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818644
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818644
    reference: chr 2
allele count: 3
allele frequency: 2.487067250298448e-5
allele num: 120624
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.112+28T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.125+28T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.308+28T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.308+28T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.308+28T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.308+28T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.308+28T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.293+28T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.293+28T>G
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8410
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-38818645-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818645
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818645
    reference: chr 2
allele count: 2
allele frequency: 1.657934876318058e-5
allele num: 120632
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.308+27A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.308+27A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.293+27A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.308+27A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.112+27A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.308+27A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.293+27A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.308+27A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.125+27A>G
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18772
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8412
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

2-38818645-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818645
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818645
    reference: chr 2
allele count: 189
allele frequency: 1.566748458120565e-3
allele num: 120632
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.308+27A>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.308+27A>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.308+27A>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.125+27A>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.293+27A>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.308+27A>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.308+27A>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.293+27A>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.112+27A>C
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 18772
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 2
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-38818650-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818650
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818650
    reference: chr 2
allele count: 1
allele frequency: 8.288987251537607e-6
allele num: 120642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.308+22T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.308+22T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.125+22T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.112+22T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.293+22T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.308+22T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.308+22T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.293+22T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.308+22T>A
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

2-38818652-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818652
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818652
    reference: chr 2
allele count: 1
allele frequency: 8.288849839196314e-6
allele num: 120644
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.308+20C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.308+20C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.293+20C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.112+20C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.308+20C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.125+20C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.308+20C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.293+20C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.308+20C>A
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

2-38818657-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818657
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818657
    reference: chr 2
allele count: 11
allele frequency: 9.115014915478953e-5
allele num: 120680
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.112+15G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.308+15G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.308+15G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.308+15G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.308+15G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.308+15G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.293+15G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.293+15G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.125+15G>A
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-38818658-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818658
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818658
    reference: chr 2
allele count: 5
allele frequency: 4.142913959962879e-5
allele num: 120688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.293+14G>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.293+14G>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.308+14G>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.308+14G>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.125+14G>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.112+14G>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.308+14G>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.308+14G>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.308+14G>T
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8459
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

2-38818659-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818659
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818659
    reference: chr 2
allele count: 1
allele frequency: 8.285004142502071e-6
allele num: 120700
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.125+13G>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.293+13G>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.308+13G>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.308+13G>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.308+13G>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.112+13G>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.293+13G>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.308+13G>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.308+13G>C
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

2-38818668-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818668
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818668
    reference: chr 2
allele count: 2
allele frequency: 1.65604040738594e-5
allele num: 120770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.112+4A>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.308+4A>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.308+4A>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.308+4A>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.308+4A>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.308+4A>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.293+4A>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.293+4A>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.125+4A>C
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
hgvs: c.293+4A>C
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

2-38818696-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818696
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818696
    reference: chr 2
allele count: 3
allele frequency: 2.480240748702007e-5
allele num: 120956
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.269C>T
  hgvsp: ENSP00000386695.1:p.Ala90Val
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.284C>T
  hgvsp: ENSP00000476852.1:p.Ala95Val
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.284C>T
  hgvsp: ENSP00000386575.1:p.Ala95Val
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.88C>T
  hgvsp: ENSP00000272249.3:p.Ala30Val
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.284C>T
  hgvsp: ENSP00000390625.3:p.Ala95Val
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.284C>T
  hgvsp: ENSP00000351136.4:p.Ala95Val
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.284C>T
  hgvsp: ENSP00000368195.3:p.Ala95Val
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.101C>T
  hgvsp: ENSP00000396669.1:p.Ala34Val
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.269C>T
  hgvsp: ENSP00000387088.1:p.Ala90Val
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27749
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala90Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/2-38818701-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818701
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818701
    reference: chr 2
allele count: 1
allele frequency: 8.265009256810368e-6
allele num: 120992
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.96G>T
  hgvsp: ENST00000425682.1:c.96G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.279G>T
  hgvsp: ENST00000358367.4:c.279G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.264G>T
  hgvsp: ENST00000410076.1:c.264G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.279G>T
  hgvsp: ENST00000608859.1:c.279G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.264G>T
  hgvsp: ENST00000409636.1:c.264G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.279G>T
  hgvsp: ENST00000378915.3:c.279G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.83G>T
  hgvsp: ENST00000272249.3:c.83G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.279G>T
  hgvsp: ENST00000449105.3:c.279G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.279G>T
  hgvsp: ENST00000409328.1:c.279G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18876
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val88Val
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

2-38818703-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818703
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818703
    reference: chr 2
allele count: 1
allele frequency: 8.263779852904718e-6
allele num: 121010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.277G>A
  hgvsp: ENSP00000390625.3:p.Val93Met
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.277G>A
  hgvsp: ENSP00000368195.3:p.Val93Met
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.94G>A
  hgvsp: ENSP00000396669.1:p.Val32Met
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.81G>A
  hgvsp: ENSP00000272249.3:p.Val28Met
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.277G>A
  hgvsp: ENSP00000386575.1:p.Val93Met
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.277G>A
  hgvsp: ENSP00000351136.4:p.Val93Met
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.277G>A
  hgvsp: ENSP00000476852.1:p.Val93Met
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.262G>A
  hgvsp: ENSP00000386695.1:p.Val88Met
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.262G>A
  hgvsp: ENSP00000387088.1:p.Val88Met
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val88Met
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

2-38818704-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818704
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818704
    reference: chr 2
allele count: 2
allele frequency: 1.652674026574998e-5
allele num: 121016
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.261C>T
  hgvsp: ENST00000409636.1:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.276C>T
  hgvsp: ENST00000449105.3:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.261C>T
  hgvsp: ENST00000410076.1:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.80C>T
  hgvsp: ENST00000272249.3:c.80C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.276C>T
  hgvsp: ENST00000608859.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.93C>T
  hgvsp: ENST00000425682.1:c.93C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.276C>T
  hgvsp: ENST00000358367.4:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.276C>T
  hgvsp: ENST00000378915.3:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.276C>T
  hgvsp: ENST00000409328.1:c.276C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46086
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu87Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD

2-38818704-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818704
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818704
    reference: chr 2
allele count: 1
allele frequency: 8.263370132874991e-6
allele num: 121016
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.276C>G
  hgvsp: ENST00000449105.3:c.276C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.276C>G
  hgvsp: ENST00000409328.1:c.276C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.93C>G
  hgvsp: ENST00000425682.1:c.93C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.276C>G
  hgvsp: ENST00000358367.4:c.276C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.276C>G
  hgvsp: ENST00000378915.3:c.276C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.261C>G
  hgvsp: ENST00000409636.1:c.261C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.80C>G
  hgvsp: ENST00000272249.3:c.80C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.276C>G
  hgvsp: ENST00000608859.1:c.276C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.261C>G
  hgvsp: ENST00000410076.1:c.261C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46086
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu87Leu
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-38818706-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818706
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818706
    reference: chr 2
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.78C>A
  hgvsp: ENSP00000272249.3:p.Leu27Ile
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.274C>A
  hgvsp: ENSP00000386575.1:p.Leu92Ile
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.91C>A
  hgvsp: ENSP00000396669.1:p.Leu31Ile
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.274C>A
  hgvsp: ENSP00000351136.4:p.Leu92Ile
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.274C>A
  hgvsp: ENSP00000476852.1:p.Leu92Ile
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.259C>A
  hgvsp: ENSP00000386695.1:p.Leu87Ile
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.259C>A
  hgvsp: ENSP00000387088.1:p.Leu87Ile
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.274C>A
  hgvsp: ENSP00000368195.3:p.Leu92Ile
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.274C>A
  hgvsp: ENSP00000390625.3:p.Leu92Ile
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu87Ile
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

2-38818734-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818734
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818734
    reference: chr 2
allele count: 2
allele frequency: 1.65128222064433e-5
allele num: 121118
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.246A>G
  hgvsp: ENST00000409328.1:c.246A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.246A>G
  hgvsp: ENST00000378915.3:c.246A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.246A>G
  hgvsp: ENST00000449105.3:c.246A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.246A>G
  hgvsp: ENST00000358367.4:c.246A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.231A>G
  hgvsp: ENST00000409636.1:c.231A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.63A>G
  hgvsp: ENST00000425682.1:c.63A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.246A>G
  hgvsp: ENST00000608859.1:c.246A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.639A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.231A>G
  hgvsp: ENST00000410076.1:c.231A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.50A>G
  hgvsp: ENST00000272249.3:c.50A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly77Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

2-38818737-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818737
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818737
    reference: chr 2
allele count: 4
allele frequency: 3.302455375571737e-5
allele num: 121122
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.228A>G
  hgvsp: ENST00000409636.1:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.60A>G
  hgvsp: ENST00000425682.1:c.60A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.243A>G
  hgvsp: ENST00000358367.4:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.243A>G
  hgvsp: ENST00000608859.1:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.228A>G
  hgvsp: ENST00000410076.1:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.47A>G
  hgvsp: ENST00000272249.3:c.47A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.243A>G
  hgvsp: ENST00000409328.1:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.243A>G
  hgvsp: ENST00000449105.3:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.636A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.243A>G
  hgvsp: ENST00000378915.3:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18878
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg76Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

2-38818748-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818748
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818748
    reference: chr 2
allele count: 1
allele frequency: 8.260230295220631e-6
allele num: 121062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.49G>A
  hgvsp: ENSP00000396669.1:p.Val17Ile
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.232G>A
  hgvsp: ENSP00000390625.3:p.Val78Ile
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.217G>A
  hgvsp: ENSP00000386695.1:p.Val73Ile
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.217G>A
  hgvsp: ENSP00000387088.1:p.Val73Ile
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.232G>A
  hgvsp: ENSP00000476852.1:p.Val78Ile
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.232G>A
  hgvsp: ENSP00000386575.1:p.Val78Ile
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.232G>A
  hgvsp: ENSP00000351136.4:p.Val78Ile
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.36G>A
  hgvsp: ENSP00000272249.3:p.Val13Ile
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.232G>A
  hgvsp: ENSP00000368195.3:p.Val78Ile
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.625G>A
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val73Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

2-38818752-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818752
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818752
    reference: chr 2
allele count: 3
allele frequency: 2.478355693609147e-5
allele num: 121048
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.228C>T
  hgvsp: ENST00000358367.4:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.45C>T
  hgvsp: ENST00000425682.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.213C>T
  hgvsp: ENST00000409636.1:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.228C>T
  hgvsp: ENST00000608859.1:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.32C>T
  hgvsp: ENST00000272249.3:c.32C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.228C>T
  hgvsp: ENST00000409328.1:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.228C>T
  hgvsp: ENST00000449105.3:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.228C>T
  hgvsp: ENST00000378915.3:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.621C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.213C>T
  hgvsp: ENST00000410076.1:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro71Pro
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff

2-38818752-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818752
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818752
    reference: chr 2
allele count: 1
allele frequency: 8.261185645363822e-6
allele num: 121048
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.45C>G
  hgvsp: ENST00000425682.1:c.45C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.228C>G
  hgvsp: ENST00000378915.3:c.228C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.621C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.228C>G
  hgvsp: ENST00000449105.3:c.228C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.32C>G
  hgvsp: ENST00000272249.3:c.32C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.213C>G
  hgvsp: ENST00000410076.1:c.213C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.228C>G
  hgvsp: ENST00000409328.1:c.228C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.228C>G
  hgvsp: ENST00000608859.1:c.228C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.228C>G
  hgvsp: ENST00000358367.4:c.228C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.213C>G
  hgvsp: ENST00000409636.1:c.213C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro71Pro
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

2-38818753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818753
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818753
    reference: chr 2
allele count: 1
allele frequency: 8.261595148791329e-6
allele num: 121042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.227C>T
  hgvsp: ENSP00000390625.3:p.Pro76Leu
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.620C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.31C>T
  hgvsp: ENSP00000272249.3:p.Pro11Leu
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.227C>T
  hgvsp: ENSP00000476852.1:p.Pro76Leu
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.227C>T
  hgvsp: ENSP00000386575.1:p.Pro76Leu
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.227C>T
  hgvsp: ENSP00000368195.3:p.Pro76Leu
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.44C>T
  hgvsp: ENSP00000396669.1:p.Pro15Leu
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.212C>T
  hgvsp: ENSP00000387088.1:p.Pro71Leu
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.212C>T
  hgvsp: ENSP00000386695.1:p.Pro71Leu
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.227C>T
  hgvsp: ENSP00000351136.4:p.Pro76Leu
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro71Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum

2-38818753-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818753
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818753
    reference: chr 2
allele count: 1
allele frequency: 8.261595148791329e-6
allele num: 121042
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.44C>G
  hgvsp: ENSP00000396669.1:p.Pro15Arg
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.227C>G
  hgvsp: ENSP00000476852.1:p.Pro76Arg
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.227C>G
  hgvsp: ENSP00000351136.4:p.Pro76Arg
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.212C>G
  hgvsp: ENSP00000386695.1:p.Pro71Arg
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.227C>G
  hgvsp: ENSP00000386575.1:p.Pro76Arg
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.227C>G
  hgvsp: ENSP00000390625.3:p.Pro76Arg
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.212C>G
  hgvsp: ENSP00000387088.1:p.Pro71Arg
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.620C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.31C>G
  hgvsp: ENSP00000272249.3:p.Pro11Arg
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.227C>G
  hgvsp: ENSP00000368195.3:p.Pro76Arg
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro71Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

2-38818767-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818767
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818767
    reference: chr 2
allele count: 1
allele frequency: 8.268562923763849e-6
allele num: 120940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.30A>G
  hgvsp: ENST00000425682.1:c.30A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.198A>G
  hgvsp: ENST00000409636.1:c.198A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.213A>G
  hgvsp: ENST00000358367.4:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.198A>G
  hgvsp: ENST00000410076.1:c.198A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.213A>G
  hgvsp: ENST00000409328.1:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.213A>G
  hgvsp: ENST00000608859.1:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.17A>G
  hgvsp: ENST00000272249.3:c.17A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.213A>G
  hgvsp: ENST00000449105.3:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.606A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.213A>G
  hgvsp: ENST00000378915.3:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys66Lys
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

2-38818768-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818768
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818768
    reference: chr 2
allele count: 1
allele frequency: 8.270614506657845e-6
allele num: 120910
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.212A>C
  hgvsp: ENSP00000476852.1:p.Lys71Thr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.212A>C
  hgvsp: ENSP00000386575.1:p.Lys71Thr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.197A>C
  hgvsp: ENSP00000387088.1:p.Lys66Thr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.212A>C
  hgvsp: ENSP00000351136.4:p.Lys71Thr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.212A>C
  hgvsp: ENSP00000390625.3:p.Lys71Thr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.197A>C
  hgvsp: ENSP00000386695.1:p.Lys66Thr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.16A>C
  hgvsp: ENSP00000272249.3:p.Lys6Thr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.29A>C
  hgvsp: ENSP00000396669.1:p.Lys10Thr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.605A>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.212A>C
  hgvsp: ENSP00000368195.3:p.Lys71Thr
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys66Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

2-38818771-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818771
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818771
    reference: chr 2
allele count: 1
allele frequency: 8.271024945411235e-6
allele num: 120904
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.209A>G
  hgvsp: ENSP00000351136.4:p.His70Arg
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.209A>G
  hgvsp: ENSP00000386575.1:p.His70Arg
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.194A>G
  hgvsp: ENSP00000386695.1:p.His65Arg
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.209A>G
  hgvsp: ENSP00000476852.1:p.His70Arg
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.26A>G
  hgvsp: ENSP00000396669.1:p.His9Arg
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.13A>G
  hgvsp: ENSP00000272249.3:p.His5Arg
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.209A>G
  hgvsp: ENSP00000390625.3:p.His70Arg
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.602A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.209A>G
  hgvsp: ENSP00000368195.3:p.His70Arg
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.194A>G
  hgvsp: ENSP00000387088.1:p.His65Arg
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His65Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

2-38818772-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818772
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818772
    reference: chr 2
allele count: 1
allele frequency: 8.271982794275789e-6
allele num: 120890
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.193C>T
  hgvsp: ENSP00000387088.1:p.His65Tyr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.193C>T
  hgvsp: ENSP00000386695.1:p.His65Tyr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.208C>T
  hgvsp: ENSP00000476852.1:p.His70Tyr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.208C>T
  hgvsp: ENSP00000390625.3:p.His70Tyr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.208C>T
  hgvsp: ENSP00000368195.3:p.His70Tyr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.601C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.12C>T
  hgvsp: ENSP00000272249.3:p.His5Tyr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.208C>T
  hgvsp: ENSP00000386575.1:p.His70Tyr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.208C>T
  hgvsp: ENSP00000351136.4:p.His70Tyr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.25C>T
  hgvsp: ENSP00000396669.1:p.His9Tyr
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His65Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

2-38818778-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818778
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818778
    reference: chr 2
allele count: 1
allele frequency: 8.27787159365584e-6
allele num: 120804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.187A>T
  hgvsp: ENSP00000386695.1:p.Ser63Cys
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.202A>T
  hgvsp: ENSP00000476852.1:p.Ser68Cys
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.19A>T
  hgvsp: ENSP00000396669.1:p.Ser7Cys
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.202A>T
  hgvsp: ENSP00000368195.3:p.Ser68Cys
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.202A>T
  hgvsp: ENSP00000390625.3:p.Ser68Cys
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.202A>T
  hgvsp: ENSP00000351136.4:p.Ser68Cys
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.595A>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000272249
  ensembl transcript: ENST00000272249
  gene symbol: HNRNPLL
  hgvsc: ENST00000272249.3:c.6A>T
  hgvsp: ENSP00000272249.3:p.Ser3Cys
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.202A>T
  hgvsp: ENSP00000386575.1:p.Ser68Cys
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.187A>T
  hgvsp: ENSP00000387088.1:p.Ser63Cys
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser63Cys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

2-38818787-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818787
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818787
    reference: chr 2
allele count: 1
allele frequency: 8.315593400745077e-6
allele num: 120256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.193G>A
  hgvsp: ENSP00000351136.4:p.Ala65Thr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.193G>A
  hgvsp: ENSP00000368195.3:p.Ala65Thr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.193G>A
  hgvsp: ENSP00000476852.1:p.Ala65Thr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.586G>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.193G>A
  hgvsp: ENSP00000390625.3:p.Ala65Thr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.193G>A
  hgvsp: ENSP00000386575.1:p.Ala65Thr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.178G>A
  hgvsp: ENSP00000387088.1:p.Ala60Thr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.178G>A
  hgvsp: ENSP00000386695.1:p.Ala60Thr
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.10G>A
  hgvsp: ENSP00000396669.1:p.Ala4Thr
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala60Thr
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-38818794-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818794
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818794
    reference: chr 2
allele count: 2
allele frequency: 1.678162076893386e-5
allele num: 119178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.190-4C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.190-4C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.175-4C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.583-4C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.175-4C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.190-4C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.190-4C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.190-4C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.7-4C>T
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2549
  bin: 2.25e1
  variant carriers: 0
hgvs: c.175-4C>T
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

2-38818798-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818798
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818798
    reference: chr 2
allele count: 3
allele frequency: 2.531944702327701e-5
allele num: 118486
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.175-8C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.190-8C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.190-8C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.190-8C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.583-8C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.175-8C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.190-8C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.190-8C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.7-8C>T
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26584
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7632
  bin: 6.75e1
  variant carriers: 0
hgvs: c.175-8C>T
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

2-38818798-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818798
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818798
    reference: chr 2
allele count: 1
allele frequency: 8.43981567442567e-6
allele num: 118486
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.190-8C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.583-8C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.190-8C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.190-8C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.190-8C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.175-8C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.7-8C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.175-8C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.190-8C>A
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.25e1
  variant carriers: 0
hgvs: c.175-8C>A
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

2-38818807-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818807
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818807
    reference: chr 2
allele count: 1
allele frequency: 8.592837011067574e-6
allele num: 116376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.190-17T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.190-17T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.175-17T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.175-17T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.190-17T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.190-17T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.583-17T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.190-17T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.7-17T>C
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6687
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37926
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

2-38818808-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818808
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818808
    reference: chr 2
allele count: 1
allele frequency: 8.596234849136078e-6
allele num: 116330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.190-18A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.190-18A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.190-18A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.190-18A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.583-18A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.190-18A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.175-18A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.7-18A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.175-18A>G
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7913
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38117
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-38818812-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818812
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818812
    reference: chr 2
allele count: 1
allele frequency: 8.658608388459807e-6
allele num: 115492
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.7-22A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.175-22A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.190-22A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.583-22A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.190-22A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.190-22A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.190-22A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.175-22A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.190-22A>G
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35597
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-38818820-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818820
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818820
    reference: chr 2
allele count: 160
allele frequency: 1.408351524540525e-3
allele num: 113608
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.190-30T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.7-30T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.190-30T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.175-30T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.583-30T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.190-30T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.175-30T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.190-30T>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.190-30T>G
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13714
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17544
  bin: 2.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11989
  bin: 3.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 13762
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2758
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 9.75e1
  variant carriers: 153
num of homozygotes: 3
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

2-38818821-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818821
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818821
    reference: chr 2
allele count: 1
allele frequency: 8.820675663755844e-6
allele num: 113370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.190-31T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.190-31T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.175-31T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.190-31T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.583-31T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.190-31T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.190-31T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.7-31T>C
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.175-31T>C
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11660
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28317
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

2-38818824-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818824
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818824
    reference: chr 2
allele count: 1
allele frequency: 8.890785589814717e-6
allele num: 112476
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.175-34A>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.190-34A>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.190-34A>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.190-34A>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.583-34A>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.175-34A>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.190-34A>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.190-34A>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.7-34A>T
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3816
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4066
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

2-38818840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38818840
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38818840
    reference: chr 2
allele count: 202
allele frequency: 2.096218504835831e-3
allele num: 96364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.583-50C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.175-50C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.7-50C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.190-50C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.190-50C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.190-50C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.190-50C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.175-50C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.190-50C>T
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8345
  bin: 7.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15782
  bin: 1.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 9874
  bin: 2.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16004
  bin: 1.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 2.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2480
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4683
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3277
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 2
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS

2-38827061-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38827061
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38827061
    reference: chr 2
allele count: 1
allele frequency: 5.595970900951315e-5
allele num: 17870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.174+2519C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.189+2519C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.189+2519C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.189+2519C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.189+2519C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.174+2519C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.582+2519C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.189+2519C>T
  variant of: http://identifiers.org/hgnc/25127
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

2-38827069-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38827069
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38827069
    reference: chr 2
allele count: 1
allele frequency: 5.602240896358544e-5
allele num: 17850
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.189+2511T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.189+2511T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.189+2511T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.189+2511T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.-24T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.174+2511T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.174+2511T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.582+2511T>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.189+2511T>A
  variant of: http://identifiers.org/hgnc/25127
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum

2-38827070-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38827070
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38827070
    reference: chr 2
allele count: 21
allele frequency: 1.176866173503699e-3
allele num: 17844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.189+2510C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.189+2510C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.174+2510C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.189+2510C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.189+2510C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.189+2510C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.582+2510C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.174+2510C>T
  variant of: http://identifiers.org/hgnc/25127
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS

2-38827071-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38827071
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38827071
    reference: chr 2
allele count: 1
allele frequency: 5.600985773496135e-5
allele num: 17854
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.174+2509C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.189+2509C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.189+2509C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.-26C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.582+2509C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.189+2509C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.189+2509C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.189+2509C>A
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.174+2509C>A
  variant of: http://identifiers.org/hgnc/25127
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

2-38827081-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38827081
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38827081
    reference: chr 2
allele count: 2
allele frequency: 1.121327651939897e-4
allele num: 17836
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.189+2499A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.189+2499A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.174+2499A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000396669
  ensembl transcript: ENST00000425682
  gene symbol: HNRNPLL
  hgvsc: ENST00000425682.1:c.-36A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.189+2499A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.582+2499A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.189+2499A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.189+2499A>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.174+2499A>G
  variant of: http://identifiers.org/hgnc/25127
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-38829534-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38829534
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38829534
    reference: chr 2
allele count: 4
allele frequency: 1.149293184691415e-4
allele num: 34804
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.174+46G>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.189+46G>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.582+46G>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.189+46G>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.189+46G>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.174+46G>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.189+46G>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.189+46G>T
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10077
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23949
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15707
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

2-38829535-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38829535
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38829535
    reference: chr 2
allele count: 3
allele frequency: 8.683068017366137e-5
allele num: 34550
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.189+45C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.189+45C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.189+45C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.189+45C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.174+45C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.189+45C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.582+45C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.174+45C>G
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10012
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24045
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15976
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4558
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

2-38829536-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38829536
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38829536
    reference: chr 2
allele count: 1
allele frequency: 2.916812507292031e-5
allele num: 34284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.189+44C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.174+44C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.189+44C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.189+44C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.189+44C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.189+44C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.174+44C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.582+44C>G
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16807
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-38829538-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38829538
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38829538
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 33274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.189+42C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.189+42C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.582+42C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.189+42C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.189+42C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.189+42C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.174+42C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.174+42C>T
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17738
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23453
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17354
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26095
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4362
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

2-38829540-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38829540
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38829540
    reference: chr 2
allele count: 1
allele frequency: 3.060350104051904e-5
allele num: 32676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.189+40C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.174+40C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.189+40C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.189+40C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.189+40C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.582+40C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.189+40C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.174+40C>T
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9478
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2179
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25623
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

2-38829547-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38829547
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38829547
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 29278
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.174+33C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.189+33C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.174+33C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.189+33C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.189+33C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.189+33C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.582+33C>G
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.189+33C>G
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21040
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21638
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20924
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23588
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

2-38829548-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38829548
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38829548
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 28536
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000368195
  ensembl transcript: ENST00000378915
  gene symbol: HNRNPLL
  hgvsc: ENST00000378915.3:c.189+32C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386695
  ensembl transcript: ENST00000410076
  gene symbol: HNRNPLL
  hgvsc: ENST00000410076.1:c.174+32C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl transcript: ENST00000498516
  gene symbol: HNRNPLL
  hgvsc: ENST00000498516.1:n.582+32C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000351136
  ensembl transcript: ENST00000358367
  gene symbol: HNRNPLL
  hgvsc: ENST00000358367.4:c.189+32C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000476852
  ensembl transcript: ENST00000608859
  gene symbol: HNRNPLL
  hgvsc: ENST00000608859.1:c.189+32C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000390625
  ensembl transcript: ENST00000449105
  gene symbol: HNRNPLL
  hgvsc: ENST00000449105.3:c.189+32C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000386575
  ensembl transcript: ENST00000409328
  gene symbol: HNRNPLL
  hgvsc: ENST00000409328.1:c.189+32C>T
  variant of: http://identifiers.org/hgnc/25127
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143889
  ensembl protein: ENSP00000387088
  ensembl transcript: ENST00000409636
  gene symbol: HNRNPLL
  hgvsc: ENST00000409636.1:c.174+32C>T
  variant of: http://identifiers.org/hgnc/25127
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7913
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29936
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3372
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4389
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8432
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1868
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 3.759e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.278e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

QD
type: SiteQuality
SIO_000300: 1.366e1

MQRankSum
type: SiteQuality
SIO_000300: 8.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.39e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.816481e6

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29935
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7912
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3372
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8432
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4388
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3352
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.570000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

QD
type: SiteQuality
SIO_000300: 1.578e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-1

FS
type: SiteQuality
SIO_000300: 3.897e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

DP
type: SiteQuality
SIO_000300: 1.816446e6

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
all individuals: 29894
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4387
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1431
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3347
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3368
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8428
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.757e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.103e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.81545e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e-1

QD
type: SiteQuality
SIO_000300: 1.49e1

GenotypeQuality
all individuals: 8428
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29887
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3368
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1431
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4386
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.77e0

MQRankSum
type: SiteQuality
SIO_000300: 3.14e0

VQSLOD
type: SiteQuality
SIO_000300: -1.567e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.937e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.812e0

DP
type: SiteQuality
SIO_000300: 1.815348e6

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3338
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4378
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7892
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1431
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8426
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.33e-2

QD
type: SiteQuality
SIO_000300: 1.392e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.814017e6

VQSLOD
type: SiteQuality
SIO_000300: -4.709e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.17e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.09e-1

GenotypeQuality
all individuals: 7837
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4356
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3355
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8427
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29600
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.819946614899296e-4
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.58e-1

FS
type: SiteQuality
SIO_000300: 1.074e0

DP
type: SiteQuality
SIO_000300: 1.81024e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.402e1

VQSLOD
type: SiteQuality
SIO_000300: 3.52e0

MQ
type: SiteQuality
SIO_000300: 6.075e1

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7829
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4354
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3356
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29568
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8427
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3316
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

FS
type: SiteQuality
SIO_000300: 2.559e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 1.809639e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 1.478e1

GenotypeQuality
all individuals: 4347
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3355
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003093185981561e-5
allele num: 66598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.641e0

QD
type: SiteQuality
SIO_000300: 1.389e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.169e0

DP
type: SiteQuality
SIO_000300: 1.807356e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 3344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 527
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GenotypeQuality
all individuals: 1427
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.328254847645429e-4
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.802884615384615e-4
allele num: 66560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 50
allele frequency: 3.040252949045361e-3
allele num: 16446
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.02e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

QD
type: SiteQuality
SIO_000300: 1.179e1

FS
type: SiteQuality
SIO_000300: 2.202e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

DP
type: SiteQuality
SIO_000300: 1.804272e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1861
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variant carriers: 0

GenotypeQuality
all individuals: 28836
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004897983713453e-5
allele num: 66558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.64e0

MQRankSum
type: SiteQuality
SIO_000300: 9.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-1

FS
type: SiteQuality
SIO_000300: 1.1406e1

QD
type: SiteQuality
SIO_000300: 1.207e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.85e-2

DP
type: SiteQuality
SIO_000300: 1.802936e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: -1.332e0

GenotypeQuality
all individuals: 28888
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1431
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3280
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50253929140247e-5
allele num: 66554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.338e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.095e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.31e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.263e0

DP
type: SiteQuality
SIO_000300: 1.803138e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 28422
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503216884132043e-5
allele num: 66524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.45e-1

DP
type: SiteQuality
SIO_000300: 1.798331e6

FS
type: SiteQuality
SIO_000300: 5.734e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.74e-1

QD
type: SiteQuality
SIO_000300: 1.385e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.21e-1

GenotypeQuality
all individuals: 741
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 389
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1430
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.323420074349442e-4
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503668952243474e-5
allele num: 66504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

MQRankSum
type: SiteQuality
SIO_000300: 8.159999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQ
type: SiteQuality
SIO_000300: 5.976e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.572e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.790816e6

QD
type: SiteQuality
SIO_000300: 1.288e1

VQSLOD
type: SiteQuality
SIO_000300: 7.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.53e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506614035616356e-5
allele num: 66374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 5.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

DP
type: SiteQuality
SIO_000300: 1.783966e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1431
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.746588693957115e-5
allele num: 10260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.87e1

DP
type: SiteQuality
SIO_000300: 1.783763e6

MQRankSum
type: SiteQuality
SIO_000300: -5.01e-1

FS
type: SiteQuality
SIO_000300: 4.767e0

QD
type: SiteQuality
SIO_000300: 1.303e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
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GenotypeQuality
all individuals: 182
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 442
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GenotypeQuality
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GenotypeQuality
all individuals: 533
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variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.592119798698908e-4
allele num: 16294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.784508e6

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

QD
type: SiteQuality
SIO_000300: 1.303e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.63e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

GenotypeQuality
all individuals: 188
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1386
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.763718023823472e-5
allele num: 10242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.935e0

DP
type: SiteQuality
SIO_000300: 1.812697e6

VQSLOD
type: SiteQuality
SIO_000300: -7.76e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.752e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

QD
type: SiteQuality
SIO_000300: 1.11e1

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44698
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8388
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.759906304899473e-5
allele num: 10246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.816193e6

VQSLOD
type: SiteQuality
SIO_000300: 3.87e0

QD
type: SiteQuality
SIO_000300: 1.572e1

MQ
type: SiteQuality
SIO_000300: 5.985e1

FS
type: SiteQuality
SIO_000300: 1.382e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

GenotypeQuality
all individuals: 233
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 44698
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8388
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.526935264825713e-5
allele num: 66270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.951981260979895e-4
allele num: 10246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.382e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.53e-1

QD
type: SiteQuality
SIO_000300: 1.572e1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.87e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

DP
type: SiteQuality
SIO_000300: 1.816193e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

GenotypeQuality
all individuals: 332
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45210
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 753
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variant carriers: 0

GenotypeQuality
all individuals: 345
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 139
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variant carriers: 0

GenotypeQuality
all individuals: 8414
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 9.75e1
variant carriers: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.543981411629802e-5
allele num: 66278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.949e1

FS
type: SiteQuality
SIO_000300: 1.234e0

DP
type: SiteQuality
SIO_000300: 1.819302e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

MQRankSum
type: SiteQuality
SIO_000300: 9.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e0

VQSLOD
type: SiteQuality
SIO_000300: 6.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.344e1

GenotypeQuality
all individuals: 340
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1832
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 45255
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508705229172324e-5
allele num: 66282
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.759906304899473e-5
allele num: 10246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.19e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.03e0

VQSLOD
type: SiteQuality
SIO_000300: 7.5e-1

QD
type: SiteQuality
SIO_000300: 1.505e1

DP
type: SiteQuality
SIO_000300: 1.818774e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 3.232e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1514
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45311
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508614187007815e-5
allele num: 66286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.89e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.21e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 6.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.32e0

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

DP
type: SiteQuality
SIO_000300: 1.824197e6

QD
type: SiteQuality
SIO_000300: 1.462e1

GenotypeQuality
all individuals: 145
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8412
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 268
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 9.75e1
variant carriers: 187

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
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GenotypeQuality
all individuals: 137
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45311
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 180
allele frequency: 1.756440281030445e-2
allele num: 10248
num of homozygotes: 2

Latino
type: Population
allele count: 9
allele frequency: 7.81114389862871e-4
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.89e-2

FS
type: SiteQuality
SIO_000300: 6.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.21e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

QD
type: SiteQuality
SIO_000300: 1.462e1

DP
type: SiteQuality
SIO_000300: 1.824197e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-1

GenotypeQuality
all individuals: 270
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
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GenotypeQuality
all individuals: 338
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GenotypeQuality
all individuals: 1667
bin: 9.75e1
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GenotypeQuality
all individuals: 45572
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 7.75e1
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GenotypeQuality
all individuals: 8451
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508614187007815e-5
allele num: 66286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.26e-1

QD
type: SiteQuality
SIO_000300: 1.523e1

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

DP
type: SiteQuality
SIO_000300: 1.805488e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

BaseQRankSum
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SIO_000300: 3.43e0

ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.508705229172324e-5
allele num: 66282
num of homozygotes: 0

InbreedingCoeff
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FS
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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DP
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MQRankSum
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ReadPosRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Non-Finnish)
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allele frequency: 1.357425115381135e-4
allele num: 66302
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African
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 3.024803387779795e-4
allele num: 6612
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MQRankSum
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QD
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DP
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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FS
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MQ
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: -6.08e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8626
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 7.540795704762766e-5
allele num: 66306
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Latino
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Other
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ClippingRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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allele num: 902
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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African
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allele frequency: 0.0e0
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ClippingRankSum
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InbreedingCoeff
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FS
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VQSLOD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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MQ
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SIO_000300: 5.978e1

DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Latino
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East Asian
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South Asian
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MQ
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ReadPosRankSum
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FS
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MQRankSum
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DP
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Latino
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African
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Other
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South Asian
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European (Finnish)
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQRankSum
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QD
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DP
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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South Asian
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Other
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African
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European (Non-Finnish)
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ClippingRankSum
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QD
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FS
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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Latino
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East Asian
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African
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South Asian
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InbreedingCoeff
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DP
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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FS
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503488092374308e-5
allele num: 66512
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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DP
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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SIO_000300: -8.74e-1

InbreedingCoeff
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 3.87e-1

QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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FS
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ClippingRankSum
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MQ
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MQRankSum
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VQSLOD
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QD
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DP
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66524
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 1.67e0

QD
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DP
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MQ
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InbreedingCoeff
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FS
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SIO_000300: 7.17e-1

VQSLOD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -1.715e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.003544182134919e-5
allele num: 66588
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.02e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

QD
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FS
type: SiteQuality
SIO_000300: 6.24e-1

BaseQRankSum
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ReadPosRankSum
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SIO_000300: -5.18e-1

DP
type: SiteQuality
SIO_000300: 1.810342e6

ClippingRankSum
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SIO_000300: 1.57e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.006907944135756e-5
allele num: 66590
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
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QD
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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East Asian
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South Asian
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allele frequency: 0.0e0
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DP
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ClippingRankSum
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BaseQRankSum
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QD
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MQ
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MQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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African
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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allele num: 66544
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FS
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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QD
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.502765087761481e-5
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num of homozygotes: 0

South Asian
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African
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European (Finnish)
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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MQ
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FS
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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African
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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ReadPosRankSum
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MQRankSum
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DP
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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European (Non-Finnish)
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East Asian
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Other
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VQSLOD
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FS
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QD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
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BaseQRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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Latino
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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European (Finnish)
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DP
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BaseQRankSum
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MQ
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FS
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QD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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East Asian
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Latino
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South Asian
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Other
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MQRankSum
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QD
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BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66450
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Other
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South Asian
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African
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European (Finnish)
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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FS
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InbreedingCoeff
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BaseQRankSum
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DP
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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African
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European (Finnish)
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Other
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BaseQRankSum
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QD
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FS
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DP
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ClippingRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Latino
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Other
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South Asian
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African
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European (Finnish)
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MQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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MQ
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FS
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InbreedingCoeff
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DP
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Finnish)
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European (Non-Finnish)
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African
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allele frequency: 9.801999607920016e-5
allele num: 10202
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.59e-1

VQSLOD
type: SiteQuality
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QD
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SIO_000300: 1.269e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.463e0

MQRankSum
type: SiteQuality
SIO_000300: -1.432e0

DP
type: SiteQuality
SIO_000300: 1.789104e6

FS
type: SiteQuality
SIO_000300: 1.879e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.222942399412988e-4
allele num: 16354
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65418
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.342e1

FS
type: SiteQuality
SIO_000300: 1.4879e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.682e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-2

DP
type: SiteQuality
SIO_000300: 1.752696e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.928e0

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.013258336681398e-4
allele num: 9956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 1.783e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 1.722973e6

MQRankSum
type: SiteQuality
SIO_000300: 9.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.557e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.77e-1

QD
type: SiteQuality
SIO_000300: 1.206e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.782715615668365e-5
allele num: 11386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64994
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.557e0

DP
type: SiteQuality
SIO_000300: 1.722973e6

MQRankSum
type: SiteQuality
SIO_000300: 9.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.77e-1

FS
type: SiteQuality
SIO_000300: 1.783e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.206e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.204243702692642e-5
allele num: 16118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63732
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

VQSLOD
type: SiteQuality
SIO_000300: -3.234e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 3.258e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.378e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.32e0

MQ
type: SiteQuality
SIO_000300: 5.879e1

DP
type: SiteQuality
SIO_000300: 1.620481e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.205013651030033e-5
allele num: 16116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.52e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16012
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.583481124904991e-5
allele num: 63152
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.32e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.572962e6

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.12e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 151
allele frequency: 1.915271435819381e-2
allele num: 7884
num of homozygotes: 3

African
type: Population
allele count: 5
allele frequency: 5.303351718285957e-4
allele num: 9428
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 9.009009009009009e-5
allele num: 11100
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.260716086737267e-4
allele num: 15864
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.1441647597254e-3
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62004
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e0

ClippingRankSum
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SIO_000300: -1.61e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
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DP
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.69e-1

QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 815
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.616501244705958e-5
allele num: 61862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11080
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.88e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.005e0

MQ
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

InbreedingCoeff
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DP
type: SiteQuality
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 210
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GenotypeQuality
all individuals: 15321
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4530
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23948
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1477
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2084
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.631960310725243e-5
allele num: 61276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15750
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.255e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.228e0

VQSLOD
type: SiteQuality
SIO_000300: -2.286e0

MQ
type: SiteQuality
SIO_000300: 5.838e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.488e0

DP
type: SiteQuality
SIO_000300: 1.355564e6

GenotypeQuality
all individuals: 7537
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1648
bin: 9.75e1
variant carriers: 198

GenotypeQuality
all individuals: 10000
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 4850
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2266
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 8622
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 264
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2538
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 621
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5086
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 460
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 469
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1142
bin: 6.75e1
variant carriers: 2

African
type: Population
allele count: 191
allele frequency: 2.413444528683346e-2
allele num: 7914
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51926
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 7.186858316221766e-4
allele num: 9740
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.875968992248062e-3
allele num: 774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5970
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.120478496154942e-5
allele num: 14044
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.034e0

DP
type: SiteQuality
SIO_000300: 1.065521e6

VQSLOD
type: SiteQuality
SIO_000300: 6.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

QD
type: SiteQuality
SIO_000300: 1.449e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 965
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4802
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583280557314756e-4
allele num: 6316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1108
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.23911e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.301e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.202e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

MQ
type: SiteQuality
SIO_000300: 5.587e1

QD
type: SiteQuality
SIO_000300: 3.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.909e0

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

GenotypeQuality
all individuals: 538
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 502
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4802
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 946
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.588814744200826e-4
allele num: 6294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1108
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.269e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

QD
type: SiteQuality
SIO_000300: 1.18e1

VQSLOD
type: SiteQuality
SIO_000300: -1.597e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.23623e5

MQRankSum
type: SiteQuality
SIO_000300: 7.35e-1

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4807
bin: 9.75e1
variant carriers: 21

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 1.808318264014467e-2
allele num: 1106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.048780487804878e-3
allele num: 328
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 1.353e1

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.02e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 5.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.94e-1

DP
type: SiteQuality
SIO_000300: 4.24e5

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 545
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4797
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 335
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.588814744200826e-4
allele num: 6294
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 1.774e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.07e1

DP
type: SiteQuality
SIO_000300: 4.23778e5

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4797
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 545
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1742
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.608922515001304e-4
allele num: 7666
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.196e1

DP
type: SiteQuality
SIO_000300: 4.23264e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.89e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

FS
type: SiteQuality
SIO_000300: 4.075e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

GenotypeQuality
all individuals: 266
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 26
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4382
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 195
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26275
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1590
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.191895113230036e-4
allele num: 16780
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 6.565988181221273e-4
allele num: 3046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9418
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.92e-1

FS
type: SiteQuality
SIO_000300: 7.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.812e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.53e-2

DP
type: SiteQuality
SIO_000300: 5.43007e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

QD
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1229
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27042
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 221
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2159
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1544
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 664
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.80158539514773e-4
allele num: 16652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2996
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9390
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.574e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.227e0

FS
type: SiteQuality
SIO_000300: 1.383e0

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.599e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.67e-1

DP
type: SiteQuality
SIO_000300: 5.42047e5

GenotypeQuality
all individuals: 633
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4518
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16360
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2126
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 147
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26998
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2036
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.067235859124867e-4
allele num: 9370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.608e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

QD
type: SiteQuality
SIO_000300: 2.682e1

FS
type: SiteQuality
SIO_000300: 4.499e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.37514e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.231e0

GenotypeQuality
all individuals: 913
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1449
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.26522e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.62e-2

FS
type: SiteQuality
SIO_000300: 4.123e0

VQSLOD
type: SiteQuality
SIO_000300: -1.915e0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

GenotypeQuality
all individuals: 146
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18100
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4309
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 534
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.079214331966328e-4
allele num: 9266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2292
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.034e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.76e-2

FS
type: SiteQuality
SIO_000300: 3.483e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-1

QD
type: SiteQuality
SIO_000300: 9.68e0

VQSLOD
type: SiteQuality
SIO_000300: -1.9e-1

DP
type: SiteQuality
SIO_000300: 5.19746e5

GenotypeQuality
all individuals: 380
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4215
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1918
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.38e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.24e-2

QD
type: SiteQuality
SIO_000300: 1.753e1

DP
type: SiteQuality
SIO_000300: 4.92452e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1