1-21924164-GGGGCTGGGTCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924164
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924153
    reference: chr 1
allele count: 11
allele frequency: 9.494708857700209e-5
allele num: 115854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 8393
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9119
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 19263
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2573
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7196
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2900
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3290
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 7.25e1
  variant carriers: 0
hgvs: c.*34+4_*34+14delAGACCCAGCCC
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: GGGGCTGGGTCT
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

1-21924164-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924164
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924164
    reference: chr 1
allele count: 1
allele frequency: 8.63155350700019e-6
allele num: 115854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.*34+15C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.*34+15C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1202+15C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.*34+15C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.*34+15C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.*34+15C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*195+15C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8393
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 3290
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2908
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

1-21924165-GGGCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924165
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924161
    reference: chr 1
allele count: 1
allele frequency: 8.631851532153647e-6
allele num: 115850
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*195+10_*195+13delAGCC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.*34+10_*34+13delAGCC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.*34+10_*34+13delAGCC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.*34+10_*34+13delAGCC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.*34+10_*34+13delAGCC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.*34+10_*34+13delAGCC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1202+10_*1202+13delAGCC
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5935
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8042
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7745
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: GGGCT
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

1-21924166-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924166
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924166
    reference: chr 1
allele count: 1
allele frequency: 8.629170046424936e-6
allele num: 115886
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*195+13C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.*34+13C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.*34+13C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.*34+13C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.*34+13C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.*34+13C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1202+13C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3964
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2893
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

1-21924168-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924168
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924168
    reference: chr 1
allele count: 1
allele frequency: 8.637219506296534e-6
allele num: 115778
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.*34+11G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.*34+11G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.*34+11G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.*34+11G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1202+11G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*195+11G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.*34+11G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2701
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2849
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

1-21924201-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924201
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924201
    reference: chr 1
allele count: 1
allele frequency: 8.485794779539051e-6
allele num: 117844
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.*12C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.*12C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.*12C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.*12C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.*12C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*173C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1180C>G
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3339
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19380
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

1-21924201-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924201
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924201
    reference: chr 1
allele count: 28
allele frequency: 2.376022538270934e-4
allele num: 117844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.*12C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.*12C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.*12C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.*12C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*173C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.*12C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1180C>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18982
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3339
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19380
  bin: 9.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19207
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

1-21924204-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924204
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924204
    reference: chr 1
allele count: 32
allele frequency: 2.710899510343776e-4
allele num: 118042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.*9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1177C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.*9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.*9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.*9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.*9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*170C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9599
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19124
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6916
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19393
  bin: 9.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5094
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19601
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

1-21924206-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924206
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924206
    reference: chr 1
allele count: 2
allele frequency: 1.692476940001693e-5
allele num: 118170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.*7C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.*7C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1175C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.*7C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.*7C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.*7C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*168C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6930
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19232
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5131
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

1-21924210-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924210
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924210
    reference: chr 1
allele count: 1
allele frequency: 8.450085345861994e-6
allele num: 118342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.*3G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.*3G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.*3G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.*3G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*164G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.*3G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1171G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19369
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19644
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

1-21924211-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924211
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924211
    reference: chr 1
allele count: 2
allele frequency: 1.688305110499569e-5
allele num: 118462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1170C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.*2C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.*2C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.*2C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*163C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.*2C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.*2C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2495
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5194
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-21924212-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924212
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924212
    reference: chr 1
allele count: 5
allele frequency: 4.219836607926541e-5
allele num: 118488
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.*1C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.*1C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.*1C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*162C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1169C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.*1C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.*1C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7074
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19902
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2498
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

1-21924213-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924213
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924213
    reference: chr 1
allele count: 1
allele frequency: 8.435686327439601e-6
allele num: 118544
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2046G>C
  hgvsp: ENSP00000441661.1:p.Ter682TyrextTer6
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1992G>C
  hgvsp: ENSP00000363897.4:p.Ter664TyrextTer6
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2085G>C
  hgvsp: ENSP00000363893.2:p.Ter695TyrextTer6
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1168G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2247G>C
  hgvsp: ENSP00000363895.2:p.Ter749TyrextTer6
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*161G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: stop_lost
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2184G>C
  hgvsp: ENSP00000290101.4:p.Ter728TyrextTer6
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19130
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2511
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19896
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5222
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19374
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ter728TyrextTer6
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

1-21924217-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924217
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924217
    reference: chr 1
allele count: 3
allele frequency: 2.526954177897574e-5
allele num: 118720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*157G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2081G>A
  hgvsp: ENSP00000363893.2:p.Cys694Tyr
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1164G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2042G>A
  hgvsp: ENSP00000441661.1:p.Cys681Tyr
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2180G>A
  hgvsp: ENSP00000290101.4:p.Cys727Tyr
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2243G>A
  hgvsp: ENSP00000363895.2:p.Cys748Tyr
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1988G>A
  hgvsp: ENSP00000363897.4:p.Cys663Tyr
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3140
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2508
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys727Tyr
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-21924225-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924225
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924225
    reference: chr 1
allele count: 1
allele frequency: 8.411560849231184e-6
allele num: 118884
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1984-4G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2038-4G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2239-4G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2176-4G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2077-4G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1160-4G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*153-4G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
hgvs: c.2176-4G>A
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-21924226-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924226
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924226
    reference: chr 1
allele count: 1
allele frequency: 8.408307407718826e-6
allele num: 118930
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2038-5T>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1984-5T>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2077-5T>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1160-5T>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*153-5T>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2239-5T>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2176-5T>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
hgvs: c.2176-5T>A
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/1-21924247-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924247
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924247
    reference: chr 1
allele count: 1
allele frequency: 8.401666890711118e-6
allele num: 119024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2077-26G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2038-26G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2239-26G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1984-26G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2176-26G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1160-26G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*153-26G>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7134
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

1-21924251-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924251
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924251
    reference: chr 1
allele count: 15
allele frequency: 1.274231638322092e-4
allele num: 117718
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1984-30A>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2077-30A>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1160-30A>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2176-30A>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2239-30A>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*153-30A>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2038-30A>C
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 16339
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10152
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7083
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2143
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2807
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4948
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

1-21924253-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924253
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924253
    reference: chr 1
allele count: 1
allele frequency: 8.406186953597848e-6
allele num: 118960
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2176-32C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2239-32C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1984-32C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2038-32C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2077-32C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1160-32C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*153-32C>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16964
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

1-21924259-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924259
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924259
    reference: chr 1
allele count: 156
allele frequency: 1.313153420091247e-3
allele num: 118798
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2077-38G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*153-38G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1984-38G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2038-38G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2239-38G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2176-38G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1160-38G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7148
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 15283
  bin: 2.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 10092
  bin: 2.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19508
  bin: 9.75e1
  variant carriers: 154
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4995
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

1-21924260-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924260
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924260
    reference: chr 1
allele count: 2
allele frequency: 1.68214237653075e-5
allele num: 118896
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2239-39C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2176-39C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1984-39C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1160-39C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2038-39C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2077-39C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*153-39C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2281
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16025
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2469
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

1-21924266-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924266
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924266
    reference: chr 1
allele count: 1
allele frequency: 8.416799932665601e-6
allele num: 118810
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2239-45T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2176-45T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1160-45T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1984-45T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2077-45T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2038-45T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*153-45T>C
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7195
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2851
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3330
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19385
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4956
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-21924271-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924271
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924271
    reference: chr 1
allele count: 20
allele frequency: 1.689417488849845e-4
allele num: 118384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1984-50G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2038-50G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2176-50G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1160-50G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2239-50G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2077-50G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*153-50G>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10521
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7344
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14330
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 19507
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

1-21924271-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924271
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924271
    reference: chr 1
allele count: 150
allele frequency: 1.267063116637383e-3
allele num: 118384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2038-50G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2176-50G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1160-50G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1984-50G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*153-50G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2239-50G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2077-50G>C
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14330
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10521
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7344
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 9.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12066
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4744
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 2
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

1-21924271-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924271
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924271
    reference: chr 1
allele count: 40
allele frequency: 3.378834977699689e-4
allele num: 118384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2038-50G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*153-50G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2077-50G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2176-50G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2239-50G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1984-50G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1160-50G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7344
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10521
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14330
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12066
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

1-21924272-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924272
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924272
    reference: chr 1
allele count: 2
allele frequency: 1.68827660723933e-5
allele num: 118464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2077-51C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2239-51C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1160-51C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*153-51C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1984-51C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2038-51C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2176-51C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10656
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2444
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

1-21924273-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924273
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924273
    reference: chr 1
allele count: 1
allele frequency: 8.43668269636379e-6
allele num: 118530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2239-52C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*153-52C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1160-52C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1984-52C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2176-52C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2077-52C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2038-52C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10769
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3358
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2863
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

1-21924406-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924406
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924406
    reference: chr 1
allele count: 1
allele frequency: 3.275681341719078e-5
allele num: 30528
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2175+48G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1159+48G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1983+48G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2037+48G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2076+48G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*152+48G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2238+48G>C
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22773
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4517
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5361
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18367
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3417
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2081
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

1-21924407-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924407
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924407
    reference: chr 1
allele count: 3
allele frequency: 9.923916639100231e-5
allele num: 30230
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*152+47A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2076+47A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2037+47A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2238+47A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1983+47A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1159+47A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2175+47A>G
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7634
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20855
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5385
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18452
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD

1-21924409-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924409
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924409
    reference: chr 1
allele count: 5
allele frequency: 1.694570595811022e-4
allele num: 29506
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2175+45G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1159+45G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2076+45G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2037+45G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1983+45G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2238+45G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*152+45G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22700
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5441
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16403
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18693
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

1-21924411-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924411
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924411
    reference: chr 1
allele count: 2
allele frequency: 6.850722751250257e-5
allele num: 29194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*152+43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1983+43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1159+43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2175+43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2238+43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2076+43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2037+43C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21333
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7021
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4655
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17502
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19116
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

1-21924440-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924440
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924440
    reference: chr 1
allele count: 1
allele frequency: 3.741674773628676e-5
allele num: 26726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1983+14C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2037+14C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2076+14C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*152+14C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2238+14C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1159+14C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2175+14C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21511
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18821
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5910
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-21924443-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924443
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924443
    reference: chr 1
allele count: 2
allele frequency: 7.491197842535021e-5
allele num: 26698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*152+11C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2076+11C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2238+11C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1983+11C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2175+11C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2037+11C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1159+11C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3893
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19994
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6053
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3690
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS

1-21924450-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924450
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924450
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 26584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1159+4C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*152+4C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2076+4C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2037+4C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2238+4C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2175+4C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1983+4C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25940
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6178
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
hgvs: c.2175+4C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-21924456-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924456
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924456
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 26910
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2236C>G
  hgvsp: ENSP00000363895.2:p.Leu746Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*150C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2173C>G
  hgvsp: ENSP00000290101.4:p.Leu725Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1981C>G
  hgvsp: ENSP00000363897.4:p.Leu661Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2035C>G
  hgvsp: ENSP00000441661.1:p.Leu679Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2074C>G
  hgvsp: ENSP00000363893.2:p.Leu692Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1157C>G
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27327
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18775
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu725Val
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-21924465-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924465
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924465
    reference: chr 1
allele count: 4
allele frequency: 1.450431503372253e-4
allele num: 27578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1148A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1972A>G
  hgvsp: ENSP00000363897.4:p.Met658Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2164A>G
  hgvsp: ENSP00000290101.4:p.Met722Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2065A>G
  hgvsp: ENSP00000363893.2:p.Met689Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2227A>G
  hgvsp: ENSP00000363895.2:p.Met743Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*141A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2026A>G
  hgvsp: ENSP00000441661.1:p.Met676Val
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29515
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3069
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met722Val
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-21924469-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924469
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924469
    reference: chr 1
allele count: 14
allele frequency: 5.041048538095924e-4
allele num: 27772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*137G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2022G>A
  hgvsp: ENST00000542643.2:c.2022G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1968G>A
  hgvsp: ENST00000374765.4:c.1968G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2061G>A
  hgvsp: ENST00000374761.2:c.2061G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1144G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2223G>A
  hgvsp: ENST00000374763.2:c.2223G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2160G>A
  hgvsp: ENST00000290101.4:c.2160G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30394
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 3054
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6504
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln720Gln
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

1-21924478-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924478
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924478
    reference: chr 1
allele count: 1
allele frequency: 3.507295173961841e-5
allele num: 28512
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2214A>C
  hgvsp: ENST00000374763.2:c.2214A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1959A>C
  hgvsp: ENST00000374765.4:c.1959A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2052A>C
  hgvsp: ENST00000374761.2:c.2052A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1135A>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2013A>C
  hgvsp: ENST00000542643.2:c.2013A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*128A>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2151A>C
  hgvsp: ENST00000290101.4:c.2151A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1964
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3356
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12927
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala717Ala
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

1-21924484-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924484
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924484
    reference: chr 1
allele count: 3
allele frequency: 1.020338752465819e-4
allele num: 29402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*122G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1129G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2007G>C
  hgvsp: ENST00000542643.2:c.2007G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2208G>C
  hgvsp: ENST00000374763.2:c.2208G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2145G>C
  hgvsp: ENST00000290101.4:c.2145G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2046G>C
  hgvsp: ENST00000374761.2:c.2046G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1953G>C
  hgvsp: ENST00000374765.4:c.1953G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11688
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32546
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu715Leu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

1-21924487-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924487
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924487
    reference: chr 1
allele count: 1
allele frequency: 3.359763472651525e-5
allele num: 29764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2043G>A
  hgvsp: ENST00000374761.2:c.2043G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1126G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2142G>A
  hgvsp: ENST00000290101.4:c.2142G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*119G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.2004G>A
  hgvsp: ENST00000542643.2:c.2004G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2205G>A
  hgvsp: ENST00000374763.2:c.2205G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1950G>A
  hgvsp: ENST00000374765.4:c.1950G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5862
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11000
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10863
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33402
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln714Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-21924492-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924492
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924492
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 30618
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2038A>G
  hgvsp: ENSP00000363893.2:p.Ile680Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2137A>G
  hgvsp: ENSP00000290101.4:p.Ile713Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1121A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1999A>G
  hgvsp: ENSP00000441661.1:p.Ile667Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1945A>G
  hgvsp: ENSP00000363897.4:p.Ile649Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*114A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2200A>G
  hgvsp: ENSP00000363895.2:p.Ile734Val
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34606
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10040
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile713Val
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

1-21924499-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924499
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924499
    reference: chr 1
allele count: 11
allele frequency: 3.536067892503536e-4
allele num: 31108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1992G>A
  hgvsp: ENST00000542643.2:c.1992G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2031G>A
  hgvsp: ENST00000374761.2:c.2031G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2193G>A
  hgvsp: ENST00000374763.2:c.2193G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*107G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1114G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1938G>A
  hgvsp: ENST00000374765.4:c.1938G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2130G>A
  hgvsp: ENST00000290101.4:c.2130G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6402
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34998
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6319
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 35177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu710Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

1-21924501-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924501
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924501
    reference: chr 1
allele count: 1
allele frequency: 3.208213025344883e-5
allele num: 31170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*105G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1112G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1936G>A
  hgvsp: ENSP00000363897.4:p.Glu646Lys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2128G>A
  hgvsp: ENSP00000290101.4:p.Glu710Lys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2029G>A
  hgvsp: ENSP00000363893.2:p.Glu677Lys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2191G>A
  hgvsp: ENSP00000363895.2:p.Glu731Lys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1990G>A
  hgvsp: ENSP00000441661.1:p.Glu664Lys
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34953
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6644
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35105
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9134
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu710Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

1-21924502-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924502
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924502
    reference: chr 1
allele count: 6
allele frequency: 1.931496265773886e-4
allele num: 31064
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2028C>T
  hgvsp: ENST00000374761.2:c.2028C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1111C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2127C>T
  hgvsp: ENST00000290101.4:c.2127C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1989C>T
  hgvsp: ENST00000542643.2:c.1989C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1935C>T
  hgvsp: ENST00000374765.4:c.1935C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*104C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2190C>T
  hgvsp: ENST00000374763.2:c.2190C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6821
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34395
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2971
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro709Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

1-21924508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924508
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924508
    reference: chr 1
allele count: 4
allele frequency: 1.258019876714052e-4
allele num: 31796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1929G>A
  hgvsp: ENST00000374765.4:c.1929G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*98G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2022G>A
  hgvsp: ENST00000374761.2:c.2022G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2121G>A
  hgvsp: ENST00000290101.4:c.2121G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1983G>A
  hgvsp: ENST00000542643.2:c.1983G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1105G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2184G>A
  hgvsp: ENST00000374763.2:c.2184G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35097
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7017
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35455
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala707Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

1-21924509-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924509
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924509
    reference: chr 1
allele count: 26
allele frequency: 8.154560281018692e-4
allele num: 31884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2021C>T
  hgvsp: ENSP00000363893.2:p.Ala674Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1982C>T
  hgvsp: ENSP00000441661.1:p.Ala661Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1104C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2183C>T
  hgvsp: ENSP00000363895.2:p.Ala728Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1928C>T
  hgvsp: ENSP00000363897.4:p.Ala643Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*97C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2120C>T
  hgvsp: ENSP00000290101.4:p.Ala707Val
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34982
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8750
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala707Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

1-21924509-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924509
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924509
    reference: chr 1
allele count: 1
allele frequency: 3.136369338853344e-5
allele num: 31884
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1928C>G
  hgvsp: ENSP00000363897.4:p.Ala643Gly
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*97C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2183C>G
  hgvsp: ENSP00000363895.2:p.Ala728Gly
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1982C>G
  hgvsp: ENSP00000441661.1:p.Ala661Gly
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2021C>G
  hgvsp: ENSP00000363893.2:p.Ala674Gly
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1104C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2120C>G
  hgvsp: ENSP00000290101.4:p.Ala707Gly
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34982
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala707Gly
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/1-21924510-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924510
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924510
    reference: chr 1
allele count: 1
allele frequency: 3.135779241141423e-5
allele num: 31890
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2119G>T
  hgvsp: ENSP00000290101.4:p.Ala707Ser
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*96G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2182G>T
  hgvsp: ENSP00000363895.2:p.Ala728Ser
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1103G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1927G>T
  hgvsp: ENSP00000363897.4:p.Ala643Ser
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2020G>T
  hgvsp: ENSP00000363893.2:p.Ala674Ser
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1981G>T
  hgvsp: ENSP00000441661.1:p.Ala661Ser
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35068
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8828
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2788
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35264
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala707Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

1-21924512-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924512
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924512
    reference: chr 1
allele count: 2
allele frequency: 6.165228113440197e-5
allele num: 32440
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1925C>G
  hgvsp: ENSP00000363897.4:p.Pro642Arg
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2018C>G
  hgvsp: ENSP00000363893.2:p.Pro673Arg
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*94C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1979C>G
  hgvsp: ENSP00000441661.1:p.Pro660Arg
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2180C>G
  hgvsp: ENSP00000363895.2:p.Pro727Arg
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2117C>G
  hgvsp: ENSP00000290101.4:p.Pro706Arg
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1101C>G
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35060
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8633
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8575
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36053
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro706Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

1-21924514-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924514
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924514
    reference: chr 1
allele count: 1
allele frequency: 3.076544425301501e-5
allele num: 32504
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2115C>A
  hgvsp: ENSP00000290101.4:p.Asp705Glu
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2016C>A
  hgvsp: ENSP00000363893.2:p.Asp672Glu
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2178C>A
  hgvsp: ENSP00000363895.2:p.Asp726Glu
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1099C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1977C>A
  hgvsp: ENSP00000441661.1:p.Asp659Glu
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1923C>A
  hgvsp: ENSP00000363897.4:p.Asp641Glu
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*92C>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7483
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2332
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp705Glu
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

1-21924520-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924520
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924520
    reference: chr 1
allele count: 1
allele frequency: 3.012592637223595e-5
allele num: 33194
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2010G>C
  hgvsp: ENSP00000363893.2:p.Leu670Phe
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2172G>C
  hgvsp: ENSP00000363895.2:p.Leu724Phe
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1971G>C
  hgvsp: ENSP00000441661.1:p.Leu657Phe
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2109G>C
  hgvsp: ENSP00000290101.4:p.Leu703Phe
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*86G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1917G>C
  hgvsp: ENSP00000363897.4:p.Leu639Phe
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1093G>C
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34842
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1301
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu703Phe
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

1-21924520-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924520
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924520
    reference: chr 1
allele count: 1
allele frequency: 3.012592637223595e-5
allele num: 33194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1917G>A
  hgvsp: ENST00000374765.4:c.1917G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2172G>A
  hgvsp: ENST00000374763.2:c.2172G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2109G>A
  hgvsp: ENST00000290101.4:c.2109G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1971G>A
  hgvsp: ENST00000542643.2:c.1971G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2010G>A
  hgvsp: ENST00000374761.2:c.2010G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1093G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*86G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8556
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6022
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu703Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD

1-21924522-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924522
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924522
    reference: chr 1
allele count: 7
allele frequency: 2.107545011139881e-4
allele num: 33214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2008T>C
  hgvsp: ENST00000374761.2:c.2008T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1915T>C
  hgvsp: ENST00000374765.4:c.1915T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*84T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2107T>C
  hgvsp: ENST00000290101.4:c.2107T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2170T>C
  hgvsp: ENST00000374763.2:c.2170T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1091T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1969T>C
  hgvsp: ENST00000542643.2:c.1969T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8603
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34865
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8181
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu703Leu
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

1-21924528-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924528
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924528
    reference: chr 1
allele count: 2
allele frequency: 6.147415011987459e-5
allele num: 32534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2002G>A
  hgvsp: ENSP00000363893.2:p.Gly668Ser
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1963G>A
  hgvsp: ENSP00000441661.1:p.Gly655Ser
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*78G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1909G>A
  hgvsp: ENSP00000363897.4:p.Gly637Ser
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1085G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2101G>A
  hgvsp: ENSP00000290101.4:p.Gly701Ser
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2164G>A
  hgvsp: ENSP00000363895.2:p.Gly722Ser
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8970
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8617
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5111
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37458
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9069
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly701Ser
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

1-21924529-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924529
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924529
    reference: chr 1
allele count: 2
allele frequency: 6.140243153628883e-5
allele num: 32572
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1908C>T
  hgvsp: ENST00000374765.4:c.1908C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2001C>T
  hgvsp: ENST00000374761.2:c.2001C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2100C>T
  hgvsp: ENST00000290101.4:c.2100C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1962C>T
  hgvsp: ENST00000542643.2:c.1962C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2163C>T
  hgvsp: ENST00000374763.2:c.2163C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1084C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*77C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34469
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala700Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

1-21924530-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924530
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924530
    reference: chr 1
allele count: 85
allele frequency: 2.622971054742949e-3
allele num: 32406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1083C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.2000C>T
  hgvsp: ENSP00000363893.2:p.Ala667Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2162C>T
  hgvsp: ENSP00000363895.2:p.Ala721Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1907C>T
  hgvsp: ENSP00000363897.4:p.Ala636Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*76C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2099C>T
  hgvsp: ENSP00000290101.4:p.Ala700Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1961C>T
  hgvsp: ENSP00000441661.1:p.Ala654Val
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8876
  bin: 1.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9355
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34392
  bin: 7.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9427
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala700Val
num of homozygotes: 1
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

1-21924531-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924531
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924531
    reference: chr 1
allele count: 20
allele frequency: 6.202319667555666e-4
allele num: 32246
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2098G>A
  hgvsp: ENSP00000290101.4:p.Ala700Thr
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*75G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1960G>A
  hgvsp: ENSP00000441661.1:p.Ala654Thr
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1906G>A
  hgvsp: ENSP00000363897.4:p.Ala636Thr
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2161G>A
  hgvsp: ENSP00000363895.2:p.Ala721Thr
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.1999G>A
  hgvsp: ENSP00000363893.2:p.Ala667Thr
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1082G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8971
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 9346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34341
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9454
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
hgvs: p.Ala700Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

1-21924532-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924532
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924532
    reference: chr 1
allele count: 9
allele frequency: 2.804612028669368e-4
allele num: 32090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.1998C>T
  hgvsp: ENST00000374761.2:c.1998C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2097C>T
  hgvsp: ENST00000290101.4:c.2097C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2160C>T
  hgvsp: ENST00000374763.2:c.2160C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*74C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1905C>T
  hgvsp: ENST00000374765.4:c.1905C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1959C>T
  hgvsp: ENST00000542643.2:c.1959C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1081C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9069
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34199
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9600
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36992
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9736
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1959C>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

1-21924545-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924545
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924545
    reference: chr 1
allele count: 33
allele frequency: 1.138794947891504e-3
allele num: 28978
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2147C>T
  hgvsp: ENSP00000363895.2:p.Ser716Leu
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*61C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2084C>T
  hgvsp: ENSP00000290101.4:p.Ser695Leu
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1892C>T
  hgvsp: ENSP00000363897.4:p.Ser631Leu
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1068C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1958-12C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.1985C>T
  hgvsp: ENSP00000363893.2:p.Ser662Leu
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32453
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12512
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9858
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34720
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2456
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12916
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser695Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

1-21924548-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924548
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924548
    reference: chr 1
allele count: 2
allele frequency: 7.306202966318405e-5
allele num: 27374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.1982G>A
  hgvsp: ENSP00000363893.2:p.Arg661Gln
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1958-15G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2081G>A
  hgvsp: ENSP00000290101.4:p.Arg694Gln
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1065G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1889G>A
  hgvsp: ENSP00000363897.4:p.Arg630Gln
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*58G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2144G>A
  hgvsp: ENSP00000363895.2:p.Arg715Gln
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31930
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13434
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9861
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2895
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33301
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg694Gln
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

1-21924559-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924559
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924558
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 22962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1958-27delC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1880-3delC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2072-3delC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.1973-3delC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1053delC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2135-3delC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*46delC
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16702
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29959
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29375
  bin: 2.25e1
  variant carriers: 0
hgvs: c.2072-3delC
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: TG
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

1-21924564-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924564
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924565
    reference: chr 1
allele count: 9
allele frequency: 4.337349397590361e-4
allele num: 20750
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*41dupC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.1973-8dupC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1880-8dupC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1048dupC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2135-8dupC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1958-32dupC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2072-8dupC
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28846
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8770
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18738
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27311
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3366
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 9.75e1
  variant carriers: 5
hgvs: c.2072-8dupC
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

1-21924567-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924567
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924567
    reference: chr 1
allele count: 1
allele frequency: 5.062265870203503e-5
allele num: 19754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.1973-10C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*39C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2072-10C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1958-34C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2135-10C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1880-10C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1046C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8057
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25779
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20252
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

1-21924580-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924580
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924580
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 16500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1958-47C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2072-23C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1033C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*26C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.1973-23C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2135-23C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1880-23C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6914
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26572
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22914
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3908
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23296
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 6.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

1-21924581-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924581
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924581
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 16010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1958-48G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.1973-24G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1880-24G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2072-24G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2135-24G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1032G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 26331
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 675
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genotype depth: GenotypeDepth
  all individuals: 6808
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 23603
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 278
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genotype quality: GenotypeQuality
  all individuals: 931
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 22300
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

1-21924594-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924594
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924594
    reference: chr 1
allele count: 1
allele frequency: 8.491847826086956e-5
allele num: 11776
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*18-6G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2072-37G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1880-37G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.1973-37G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1025-6G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1958-61G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2135-37G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26048
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
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genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3063
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 280
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 25611
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14409
  bin: 2.25e1
  variant carriers: 0
hgvs: c.*18-6G>A
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

1-21924595-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924595
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924595
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 11706
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2072-38C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*18-7C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2135-38C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.1973-38C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1958-62C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1025-7C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1880-38C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14848
  bin: 2.25e1
  variant carriers: 0
hgvs: c.*18-7C>T
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD

1-21924596-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924596
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924596
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 11356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.1973-39G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1880-39G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1025-8G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*18-8G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1958-63G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2072-39G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2135-39G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25474
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6469
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14075
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25739
  bin: 7.5e0
  variant carriers: 0
hgvs: c.*18-8G>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ

1-21924600-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924600
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924600
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 11060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.1973-43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*18-12C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1958-67C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1025-12C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2135-43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1880-43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2072-43C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25801
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6907
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2952
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5343
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13429
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

1-21924850-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924850
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924850
    reference: chr 1
allele count: 123
allele frequency: 1.029650588491353e-3
allele num: 119458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.1972+43G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*17+43G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1957+43G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2071+43G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1879+43G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2134+43G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1024+43G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9531
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15588
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24808
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38383
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

1-21924856-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924856
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924856
    reference: chr 1
allele count: 1
allele frequency: 8.351707088928977e-6
allele num: 119736
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1024+37T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1879+37T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.1972+37T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2071+37T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*17+37T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1957+37T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2134+37T>C
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7201
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1715
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

1-21924862-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21924862
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21924862
    reference: chr 1
allele count: 1
allele frequency: 8.335834083558401e-6
allele num: 119964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.*17+31C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1957+31C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.*1024+31C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1879+31C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.2071+31C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.2134+31C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.1972+31C>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25824
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 191
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2606
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1665
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2908
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2572
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2978
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3944
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.546359868868683e-4
allele num: 64668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.65892501658925e-4
allele num: 6028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

FS
type: SiteQuality
SIO_000300: 7.584e0

DP
type: SiteQuality
SIO_000300: 1.994555e6

MQRankSum
type: SiteQuality
SIO_000300: -4.453e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-1

MQ
type: SiteQuality
SIO_000300: 5.207e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.98e-1

QD
type: SiteQuality
SIO_000300: 3.75e0

GenotypeQuality
all individuals: 191
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19263
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2573
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2900
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2978
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3944
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7196
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1665
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2572
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2134
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.926167059149467e-5
allele num: 14438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

FS
type: SiteQuality
SIO_000300: 7.584e0

MQ
type: SiteQuality
SIO_000300: 5.207e1

MQRankSum
type: SiteQuality
SIO_000300: -4.453e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

DP
type: SiteQuality
SIO_000300: 1.994555e6

QD
type: SiteQuality
SIO_000300: 3.75e0

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

GenotypeQuality
all individuals: 61
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2639
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2543
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3942
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19252
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2906
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3237
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2978
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2577
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547173314354674e-5
allele num: 64634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

MQRankSum
type: SiteQuality
SIO_000300: -3.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.601e0

QD
type: SiteQuality
SIO_000300: 1.315e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.47e1

DP
type: SiteQuality
SIO_000300: 1.995705e6

GenotypeQuality
all individuals: 2146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2109
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2224
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2664
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19251
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8296
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2995
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2557
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2583
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547029702970297e-5
allele num: 64640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.29e-1

DP
type: SiteQuality
SIO_000300: 1.997544e6

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.5e1

MQ
type: SiteQuality
SIO_000300: 5.896e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -6.279999999999999e-2

GenotypeQuality
all individuals: 1509
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2107
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8928
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4013
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2600
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1437
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19261
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2987
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547508511296812e-5
allele num: 64620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6018
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14406
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 2.00254e6

VQSLOD
type: SiteQuality
SIO_000300: -1.175e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 8.630000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.74e-1

GenotypeQuality
all individuals: 588
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5041
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19207
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2436
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530784067599424e-5
allele num: 65326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6158
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.110959e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.025e0

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

FS
type: SiteQuality
SIO_000300: 1.181e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

QD
type: SiteQuality
SIO_000300: 1.101e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2436
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5041
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 4.286195389278389e-4
allele num: 65326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

FS
type: SiteQuality
SIO_000300: 1.181e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.025e0

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

QD
type: SiteQuality
SIO_000300: 1.101e1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

DP
type: SiteQuality
SIO_000300: 2.110959e6

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2468
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3358
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1631
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2817
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2256
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 27
allele frequency: 2.36096537250787e-3
allele num: 11436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.254784533263898e-4
allele num: 15362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.115744e6

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e-1

QD
type: SiteQuality
SIO_000300: 1.144e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.937e0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19732
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2487
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3387
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2828
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2257
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19368
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15410
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.746419839329375e-4
allele num: 11452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6188
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.641e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 1.969e0

QD
type: SiteQuality
SIO_000300: 9.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

ReadPosRankSum
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BaseQRankSum
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SIO_000300: -5.72e-1

MQRankSum
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DP
type: SiteQuality
SIO_000300: 2.118627e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6200
num of homozygotes: 0

African
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allele frequency: 9.742790335151988e-5
allele num: 10264
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65492
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.932e1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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FS
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.051199121254653e-5
allele num: 65548
num of homozygotes: 0

QD
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FS
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VQSLOD
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MQRankSum
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MQ
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DP
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -4.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65550
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African
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allele frequency: 4.869497467861317e-4
allele num: 10268
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South Asian
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FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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DP
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ReadPosRankSum
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MQRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65564
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.719916288803627e-5
allele num: 11468
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ReadPosRankSum
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BaseQRankSum
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MQ
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SIO_000300: 6.0e1

QD
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ClippingRankSum
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SIO_000300: 1.09e0

FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 2.127773e6

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.572194958393026e-5
allele num: 65614
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Latino
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allele frequency: 0.0e0
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QD
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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MQ
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 65678
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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BaseQRankSum
type: SiteQuality
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MQ
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MQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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DP
type: SiteQuality
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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African
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allele num: 10288
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Other
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ClippingRankSum
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QD
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FS
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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DP
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MQ
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele num: 65718
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Latino
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South Asian
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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VQSLOD
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FS
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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East Asian
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European (Non-Finnish)
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allele frequency: 1.693297620147163e-4
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Other
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African
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MQ
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BaseQRankSum
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DP
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VQSLOD
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QD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522394421946838e-5
allele num: 65686
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 2.1138e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

FS
type: SiteQuality
SIO_000300: 5.296e0

VQSLOD
type: SiteQuality
SIO_000300: -9.026999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.36e0

QD
type: SiteQuality
SIO_000300: 1.246e1

GenotypeQuality
all individuals: 3319
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 91
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15942
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1064
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 150
allele frequency: 9.614152031790796e-3
allele num: 15602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.70170553428472e-5
allele num: 11492
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.314814814814815e-3
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.735202492211838e-5
allele num: 10272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.046365685736916e-5
allele num: 65652
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.099e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

FS
type: SiteQuality
SIO_000300: 1.887e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

DP
type: SiteQuality
SIO_000300: 2.110826e6

GenotypeQuality
all individuals: 2845
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 5038
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.325581395348837e-4
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65698
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.110805e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.767e0

FS
type: SiteQuality
SIO_000300: 5.721e0

QD
type: SiteQuality
SIO_000300: 1.12e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

GenotypeQuality
all individuals: 139
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1564
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1630
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14187
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2259
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521653123953863e-5
allele num: 65718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15536
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.54e-1

DP
type: SiteQuality
SIO_000300: 2.109185e6

QD
type: SiteQuality
SIO_000300: 1.253e1

MQRankSum
type: SiteQuality
SIO_000300: 3.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.86e-1

GenotypeQuality
all individuals: 175
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4744
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3314
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
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variant carriers: 0

GenotypeQuality
all individuals: 12066
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.74089226573154e-5
allele num: 10266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.177629488401653e-4
allele num: 6294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.592095633081239e-4
allele num: 65584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 2.118361e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.95e-2

FS
type: SiteQuality
SIO_000300: 5.82e-1

QD
type: SiteQuality
SIO_000300: 1.28e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.3e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
all individuals: 1789
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1096
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3314
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
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variant carriers: 0

GenotypeQuality
all individuals: 19507
bin: 9.75e1
variant carriers: 147

GenotypeQuality
all individuals: 2245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 5.75e1
variant carriers: 1

Latino
type: Population
allele count: 8
allele frequency: 6.968641114982578e-4
allele num: 11480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
type: Population
allele count: 142
allele frequency: 1.383206701733879e-2
allele num: 10266
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.3e0

FS
type: SiteQuality
SIO_000300: 5.82e-1

DP
type: SiteQuality
SIO_000300: 2.118361e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.95e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

QD
type: SiteQuality
SIO_000300: 1.28e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

GenotypeQuality
all individuals: 175
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3314
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19507
bin: 9.75e1
variant carriers: 40

South Asian
type: Population
allele count: 1
allele frequency: 6.536802196365538e-5
allele num: 15298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65584
num of homozygotes: 0

African
type: Population
allele count: 38
allele frequency: 3.701539060977985e-3
allele num: 10266
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.710801393728223e-5
allele num: 11480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.28e1

MQ
type: SiteQuality
SIO_000300: 5.979e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.95e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

FS
type: SiteQuality
SIO_000300: 5.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

DP
type: SiteQuality
SIO_000300: 2.118361e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

GenotypeQuality
all individuals: 2857
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4779
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1090
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11868
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3345
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19425
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52452968259292e-5
allele num: 65594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.737098344693281e-5
allele num: 10270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.129999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.469e0

MQRankSum
type: SiteQuality
SIO_000300: 7.12e-1

DP
type: SiteQuality
SIO_000300: 2.119921e6

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e-1

QD
type: SiteQuality
SIO_000300: 1.214e1

GenotypeQuality
all individuals: 1003
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11692
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1770
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1714
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 800
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variant carriers: 0

GenotypeQuality
all individuals: 2454
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.510416666666667e-5
allele num: 15360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.551e0

QD
type: SiteQuality
SIO_000300: 1.162e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

DP
type: SiteQuality
SIO_000300: 2.121408e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.85e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

GenotypeQuality
all individuals: 86
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17062
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 561
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GenotypeQuality
all individuals: 218
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GenotypeQuality
all individuals: 35
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.334726973267453e-5
allele num: 15786
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.53e0

MQRankSum
type: SiteQuality
SIO_000300: 8.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.83e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

QD
type: SiteQuality
SIO_000300: 3.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 4.98041e5

GenotypeQuality
all individuals: 215
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16808
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 741
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.083423618634886e-3
allele num: 1846
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.849002849002849e-4
allele num: 3510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 15592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7722
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 5.863e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.89e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.96476e5

VQSLOD
type: SiteQuality
SIO_000300: -9.171e-1

QD
type: SiteQuality
SIO_000300: 1.315e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 15138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1786
num of homozygotes: 0

African
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allele count: 5
allele frequency: 1.452643811737362e-3
allele num: 3442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e-1

FS
type: SiteQuality
SIO_000300: 9.164999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.87e-2

DP
type: SiteQuality
SIO_000300: 4.92763e5

QD
type: SiteQuality
SIO_000300: 1.281e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.684491978609626e-5
allele num: 14960
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.322751322751323e-3
allele num: 756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1734
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.94385e5

FS
type: SiteQuality
SIO_000300: 1.415e0

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.92e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.134e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.334044823906083e-4
allele num: 7496
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.05e0

DP
type: SiteQuality
SIO_000300: 5.02595e5

VQSLOD
type: SiteQuality
SIO_000300: -2.429e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.992e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.91e-2

GenotypeQuality
all individuals: 1055
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variant carriers: 0

GenotypeQuality
all individuals: 19406
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.504890895410083e-4
allele num: 13290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3176
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.58e0

DP
type: SiteQuality
SIO_000300: 5.05853e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.88e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

QD
type: SiteQuality
SIO_000300: 1.964e1

VQSLOD
type: SiteQuality
SIO_000300: -2.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.95e-1

FS
type: SiteQuality
SIO_000300: 3.01e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 435
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3232
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

QD
type: SiteQuality
SIO_000300: 9.68e0

VQSLOD
type: SiteQuality
SIO_000300: -3.862e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.14745e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.78e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3250
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 13334
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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QD
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 2
allele frequency: 1.204819277108434e-3
allele num: 1660
num of homozygotes: 0

Other
type: Population
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South Asian
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allele count: 2
allele frequency: 2.684563758389261e-4
allele num: 7450
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 13780
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.922e1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
type: Population
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allele frequency: 0.0e0
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African
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 1.89086980010805e-3
allele num: 7404
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European (Finnish)
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allele frequency: 0.0e0
allele num: 392
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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DP
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FS
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MQRankSum
type: SiteQuality
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QD
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BaseQRankSum
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SIO_000300: -1.528e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
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allele frequency: 1.386577925679423e-4
allele num: 7212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14586
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.59479e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-2

MQ
type: SiteQuality
SIO_000300: 5.875e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.485e0

VQSLOD
type: SiteQuality
SIO_000300: -3.538e0

QD
type: SiteQuality
SIO_000300: 5.65e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1872
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 4.174784302811021e-4
allele num: 7186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: -1.556e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.39e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.72358e5

BaseQRankSum
type: SiteQuality
SIO_000300: -6.42e-1

FS
type: SiteQuality
SIO_000300: 5.946e0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 5.4e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15528
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.404494382022472e-4
allele num: 7120
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

QD
type: SiteQuality
SIO_000300: 7.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.18e-1

DP
type: SiteQuality
SIO_000300: 5.76892e5

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.27e-2

GenotypeQuality
all individuals: 32
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 179
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 5.81841e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

QD
type: SiteQuality
SIO_000300: 9.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.08e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

GenotypeQuality
all individuals: 2063
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 167
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GenotypeQuality
all individuals: 31
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 3.08815272318922e-3
allele num: 3562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2052
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6890
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.1983e1

DP
type: SiteQuality
SIO_000300: 5.86433e5

QD
type: SiteQuality
SIO_000300: 1.141e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.304999999999999e-1

GenotypeQuality
all individuals: 150
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 6157
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 169
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variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16672
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.784688995215311e-4
allele num: 2090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6866
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.089e-1

QD
type: SiteQuality
SIO_000300: 9.6e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 5.87253e5

GenotypeQuality
all individuals: 483
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
all individuals: 5399
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variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.415458937198068e-3
allele num: 1242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.995203836930456e-5
allele num: 16680
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.878526194588371e-4
allele num: 3474
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.481042654028436e-4
allele num: 6752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.82726e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.06e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

QD
type: SiteQuality
SIO_000300: 1.019e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17210
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 568
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African
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allele count: 1
allele frequency: 2.858776443682104e-4
allele num: 3498
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 4.5004500450045e-4
allele num: 6666
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.98e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

FS
type: SiteQuality
SIO_000300: 1.69e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.289e1

DP
type: SiteQuality
SIO_000300: 5.84889e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 21

GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2270
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.503759398496241e-4
allele num: 6650
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.853881278538813e-4
allele num: 3504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 1.389532190829088e-3
allele num: 17272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1354
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 5.87622e5

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

FS
type: SiteQuality
SIO_000300: 1.102e0

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.247e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.853881278538813e-4
allele num: 3504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2270
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 580
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17272
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

DP
type: SiteQuality
SIO_000300: 5.87622e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

FS
type: SiteQuality
SIO_000300: 1.102e0

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

GenotypeQuality
all individuals: 1631
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GenotypeQuality
all individuals: 64
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 570
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.767012687427912e-5
allele num: 17340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

QD
type: SiteQuality
SIO_000300: 9.84e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.95e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.08e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.06e0

MQ
type: SiteQuality
SIO_000300: 5.36e1

DP
type: SiteQuality
SIO_000300: 5.82636e5

GenotypeQuality
all individuals: 1629
bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2318
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.009328919650918e-4
allele num: 6646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1434
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.65e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.86436e5

ClippingRankSum
type: SiteQuality
SIO_000300: 9.88e-1

QD
type: SiteQuality
SIO_000300: 1.089e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1470
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.519295047098146e-4
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.963e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.91e-2

DP
type: SiteQuality
SIO_000300: 5.85411e5

QD
type: SiteQuality
SIO_000300: 2.778e1

VQSLOD
type: SiteQuality
SIO_000300: -2.571e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.23e-1

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 200
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GenotypeQuality
all individuals: 135
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.499945000549994e-5
allele num: 18182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.87918e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.62e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 1.0879e1

QD
type: SiteQuality
SIO_000300: 1.121e1

VQSLOD
type: SiteQuality
SIO_000300: -9.455e-1

GenotypeQuality
all individuals: 1069
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.548467017652524e-4
allele num: 6458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18182
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

FS
type: SiteQuality
SIO_000300: 1.0879e1

QD
type: SiteQuality
SIO_000300: 1.121e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.62e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.87918e5

VQSLOD
type: SiteQuality
SIO_000300: -9.455e-1

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 58
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GenotypeQuality
all individuals: 25
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 6.188118811881188e-4
allele num: 1616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 5.564830272676684e-4
allele num: 3594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2504
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.568873548791967e-4
allele num: 6374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.646180860403863e-4
allele num: 18224
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.86e-2

FS
type: SiteQuality
SIO_000300: 4.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.026e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.28e0

DP
type: SiteQuality
SIO_000300: 5.83865e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 290
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GenotypeQuality
all individuals: 29
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.11333778668448e-4
allele num: 17964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

DP
type: SiteQuality
SIO_000300: 5.74161e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.01e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.11e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.11e-1

FS
type: SiteQuality
SIO_000300: 2.076e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

QD
type: SiteQuality
SIO_000300: 5.93e0

VQSLOD
type: SiteQuality
SIO_000300: -1.299e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 470
bin: 6.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.113213848380274e-4
allele num: 17966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2494
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VQSLOD
type: SiteQuality
SIO_000300: 1.59e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.83e-1

QD
type: SiteQuality
SIO_000300: 1.274e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.02e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

DP
type: SiteQuality
SIO_000300: 5.70987e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1699
bin: 2.75e1
variant carriers: 1

African
type: Population
allele count: 85
allele frequency: 2.429959977129788e-2
allele num: 3498
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1662
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17870
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

QD
type: SiteQuality
SIO_000300: 1.171e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.94e-2

FS
type: SiteQuality
SIO_000300: 3.401e0

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.65222e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 98
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GenotypeQuality
all individuals: 1325
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GenotypeQuality
all individuals: 212
bin: 9.75e1
variant carriers: 17

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 4.913294797687861e-3
allele num: 3460
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.373819163292847e-4
allele num: 5928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.616084465910367e-5
allele num: 17806
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 1.041e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 1.799e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.6531e5

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.06e-2

GenotypeQuality
all individuals: 109
bin: 7.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 1132
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2506
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.412969283276451e-4
allele num: 5860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 3.939666816749212e-4
allele num: 17768
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

QD
type: SiteQuality
SIO_000300: 1.013e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

FS
type: SiteQuality
SIO_000300: 6.012e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 5.60898e5

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 31

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 1.904878948015239e-3
allele num: 16274
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.586800573888092e-4
allele num: 2788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5028
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.761904761904762e-3
allele num: 210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.107e0

FS
type: SiteQuality
SIO_000300: 5.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.68e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

DP
type: SiteQuality
SIO_000300: 5.10208e5

QD
type: SiteQuality
SIO_000300: 1.043e1

GenotypeQuality
all individuals: 80
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 137
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GenotypeQuality
all individuals: 195
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variant carriers: 2

African
type: Population
allele count: 1
allele frequency: 3.946329913180742e-4
allele num: 2534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.475006475006475e-5
allele num: 15444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2358
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.855e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.33e-1

FS
type: SiteQuality
SIO_000300: 1.463e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.93e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.203e0

DP
type: SiteQuality
SIO_000300: 4.95816e5

VQSLOD
type: SiteQuality
SIO_000300: -2.3e0

QD
type: SiteQuality
SIO_000300: 8.039999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 192
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 16974
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2096
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.67e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.119e1

QD
type: SiteQuality
SIO_000300: 4.56e0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 4.53004e5

VQSLOD
type: SiteQuality
SIO_000300: 4.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

GenotypeQuality
all individuals: 70
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 163
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 1090
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 6.610477607007106e-4
allele num: 12102
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1144
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.47645125958379e-4
allele num: 1826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

DP
type: SiteQuality
SIO_000300: 4.31774e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.05e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

QD
type: SiteQuality
SIO_000300: 7.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 192
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GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 44
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.568980291345329e-5
allele num: 11670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1060
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.736e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

FS
type: SiteQuality
SIO_000300: 5.815e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.56e-1

DP
type: SiteQuality
SIO_000300: 4.16149e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-2

QD
type: SiteQuality
SIO_000300: 6.03e0

GenotypeQuality
all individuals: 960
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.82592e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.684e0

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.64e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 39
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2030
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.33e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 9.83e0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.75e-2

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.79458e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.334757074212493e-4
allele num: 7492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1230
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1086
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.038e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.39503e5

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1120
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25839
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 292
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1232
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.36e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.068e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 3.39339e5

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.44e0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5031
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3249
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1040
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.46e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

QD
type: SiteQuality
SIO_000300: 1.038e1

DP
type: SiteQuality
SIO_000300: 3.36648e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 27
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25903
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1004
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1132
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.1e1

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 3.3407e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.39e-2

GenotypeQuality
all individuals: 96
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7145
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 9.75e1
variant carriers: 121

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.109268633269332e-4
allele num: 11458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.031681067151736e-5
allele num: 65970
num of homozygotes: 0

African
type: Population
allele count: 111
allele frequency: 1.071635450859239e-2
allele num: 10358
num of homozygotes: 1

South Asian
type: Population
allele count: 3
allele frequency: 1.904520060944642e-4
allele num: 15752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.474e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

DP
type: SiteQuality
SIO_000300: 1.575831e6

VQSLOD
type: SiteQuality
SIO_000300: 6.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

GenotypeQuality
all individuals: 606
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41000
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513225591671206e-5
allele num: 66084
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.14e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.125999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

QD
type: SiteQuality
SIO_000300: 1.303e1

VQSLOD
type: SiteQuality
SIO_000300: -1.041e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

DP
type: SiteQuality
SIO_000300: 1.589359e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e0

MQRankSum
type: SiteQuality
SIO_000300: -1.78e-1