3-197476811-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476811
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476811
    reference: chr 3
allele count: 4
allele frequency: 1.192179303767287e-4
allele num: 33552
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+290C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+290C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.-32C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+290C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.-32C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6486C>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7961
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8816
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34874
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 604
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 442
  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 956
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

3-197476813-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476813
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476813
    reference: chr 3
allele count: 5
allele frequency: 1.406469760900141e-4
allele num: 35550
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+292G>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.-30G>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.-30G>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+292G>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6484G>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.-30G>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+292G>C
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8345
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 527
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1147
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  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 30
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1738
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genotype quality: GenotypeQuality
  all individuals: 537
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

3-197476814-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476814
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476814
    reference: chr 3
allele count: 1
allele frequency: 2.741528676389955e-5
allele num: 36476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+293C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6483C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+293C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+293C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.-29C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.-29C>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 134
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

3-197476816-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476816
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476816
    reference: chr 3
allele count: 1
allele frequency: 2.497502497502498e-5
allele num: 40040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+295C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+295C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6481C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+295C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.-27C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.-27C>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 27
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genotype quality: GenotypeQuality
  all individuals: 434
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10211
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/3-197476818-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476818
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476818
    reference: chr 3
allele count: 12
allele frequency: 2.77713492247165e-4
allele num: 43210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+297C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.-25C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.-25C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.-25C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+297C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6479C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+297C>A
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6615
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32825
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4792
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29979
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP

3-197476818-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476818
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476818
    reference: chr 3
allele count: 3
allele frequency: 6.942837306179126e-5
allele num: 43210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6479C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+297C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+297C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.-25C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+297C>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6615
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3721
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3400
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4792
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

3-197476820-CTCTCGGCGCGACG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476820
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476807
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 48584
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: 5' UTR
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 15605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5987
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31037
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14943
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28774
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: CTCTCGGCGCGACG
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-197476822-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476822
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476822
    reference: chr 3
allele count: 3
allele frequency: 5.760589884404163e-5
allele num: 52078
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+301C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6475C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.-21C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+301C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.-21C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+301C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.-21C>G
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3844
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

3-197476824-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476824
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476824
    reference: chr 3
allele count: 3
allele frequency: 5.451968160505943e-5
allele num: 55026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+303C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+303C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.-19C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.-19C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6473C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.-19C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+303C>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3840
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 368
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 3662
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2736
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-197476827-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476827
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476827
    reference: chr 3
allele count: 2
allele frequency: 3.335445782328808e-5
allele num: 59962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6470C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.-16C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+306C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.-16C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.-16C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+306C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+306C>A
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26463
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 572
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 691
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genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19849
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-197476829-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476829
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476829
    reference: chr 3
allele count: 1
allele frequency: 1.556759449529859e-5
allele num: 64236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.-14C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+308C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.-14C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+308C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+308C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6468C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.-14C>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23258
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
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genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3011
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23307
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 525
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

3-197476834-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476834
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476834
    reference: chr 3
allele count: 1
allele frequency: 1.329398314322937e-5
allele num: 75222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+313T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.-9T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.-9T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.-9T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+313T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6463T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+313T>C
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2395
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19285
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

3-197476837-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476837
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476837
    reference: chr 3
allele count: 1
allele frequency: 1.250750450270162e-5
allele num: 79952
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+316C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.-6C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+316C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.-6C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6460C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+316C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.-6C>G
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18024
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 31131
  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 1292
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genotype depth: GenotypeDepth
  all individuals: 11
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
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genotype quality: GenotypeQuality
  all individuals: 46
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 30958
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 206
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genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 98
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-197476837-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476837
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476837
    reference: chr 3
allele count: 1
allele frequency: 1.250750450270162e-5
allele num: 79952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.-6C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+316C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.-6C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.-6C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+316C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6460C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+316C>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18024
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 1292
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 319
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genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 265
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 980
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genotype quality: GenotypeQuality
  all individuals: 98
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genotype quality: GenotypeQuality
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

3-197476841-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476841
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476841
    reference: chr 3
allele count: 1
allele frequency: 1.175309106294956e-5
allele num: 85084
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6456C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+320C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.-2C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+320C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+320C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.-2C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.-2C>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33198
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1308
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15687
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 12
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
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genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 96
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 439
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33361
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

3-197476849-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476849
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476849
    reference: chr 3
allele count: 2
allele frequency: 2.131196453689101e-5
allele num: 93844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+328C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+328C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6448C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.7C>T
  hgvsp: ENSP00000241502.3:p.Arg3Trp
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.7C>T
  hgvsp: ENSP00000409257.1:p.Arg3Trp
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.7C>T
  hgvsp: ENSP00000400191.1:p.Arg3Trp
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+328C>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37189
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38275
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11352
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg3Trp
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

3-197476852-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476852
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476852
    reference: chr 3
allele count: 2
allele frequency: 2.0507351885651e-5
allele num: 97526
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.10T>C
  hgvsp: ENSP00000409257.1:p.Phe4Leu
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.10T>C
  hgvsp: ENSP00000400191.1:p.Phe4Leu
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+331T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+331T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.10T>C
  hgvsp: ENSP00000241502.3:p.Phe4Leu
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+331T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6445T>C
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9993
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38880
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6061
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9835
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Phe4Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

3-197476860-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476860
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476860
    reference: chr 3
allele count: 1
allele frequency: 9.768486861385172e-6
allele num: 102370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+339C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.18C>T
  hgvsp: ENST00000241502.4:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+339C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.18C>T
  hgvsp: ENST00000418169.1:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6437C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.18C>T
  hgvsp: ENST00000412924.1:c.18C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+339C>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7536
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3033
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43439
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr6Thr
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

3-197476861-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476861
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476861
    reference: chr 3
allele count: 1
allele frequency: 9.70873786407767e-6
allele num: 103000
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.19C>T
  hgvsp: ENSP00000400191.1:p.Arg7Trp
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6436C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.19C>T
  hgvsp: ENSP00000409257.1:p.Arg7Trp
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+340C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.19C>T
  hgvsp: ENSP00000241502.3:p.Arg7Trp
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+340C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+340C>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40951
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43710
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg7Trp
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

3-197476880-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476880
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476880
    reference: chr 3
allele count: 1
allele frequency: 9.195740532985121e-6
allele num: 108746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6417C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+359C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.38C>T
  hgvsp: ENSP00000241502.3:p.Ala13Val
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.38C>T
  hgvsp: ENSP00000409257.1:p.Ala13Val
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.38C>T
  hgvsp: ENSP00000400191.1:p.Ala13Val
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+359C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+359C>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4651
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala13Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum

3-197476883-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476883
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476883
    reference: chr 3
allele count: 1
allele frequency: 9.164390842940669e-6
allele num: 109118
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.41C>G
  hgvsp: ENSP00000409257.1:p.Thr14Ser
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+362C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+362C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6414C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.41C>G
  hgvsp: ENSP00000241502.3:p.Thr14Ser
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.41C>G
  hgvsp: ENSP00000400191.1:p.Thr14Ser
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+362C>G
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr14Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-197476886-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476886
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476886
    reference: chr 3
allele count: 2
allele frequency: 1.829089844893181e-5
allele num: 109344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+365C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.44C>A
  hgvsp: ENSP00000409257.1:p.Ser15Tyr
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6411C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+365C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.44C>A
  hgvsp: ENSP00000241502.3:p.Ser15Tyr
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+365C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.44C>A
  hgvsp: ENSP00000400191.1:p.Ser15Tyr
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4565
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser15Tyr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

3-197476890-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476890
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476890
    reference: chr 3
allele count: 2
allele frequency: 1.825183887276643e-5
allele num: 109578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6407G>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+369G>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+369G>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.48G>C
  hgvsp: ENST00000412924.1:c.48G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.48G>C
  hgvsp: ENST00000418169.1:c.48G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+369G>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.48G>C
  hgvsp: ENST00000241502.4:c.48G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42643
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4528
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3384
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser16Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ

3-197476890-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476890
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476890
    reference: chr 3
allele count: 10
allele frequency: 9.125919436383216e-5
allele num: 109578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.48G>T
  hgvsp: ENST00000412924.1:c.48G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+369G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.48G>T
  hgvsp: ENST00000241502.4:c.48G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+369G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+369G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6407G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.48G>T
  hgvsp: ENST00000418169.1:c.48G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42643
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4528
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 9.75e1
  variant carriers: 7
hgvs: p.Ser16Ser
num of homozygotes: 1
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

3-197476893-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476893
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476893
    reference: chr 3
allele count: 1
allele frequency: 9.101996978137003e-6
allele num: 109866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+372G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+372G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+372G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.51G>T
  hgvsp: ENST00000241502.4:c.51G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.51G>T
  hgvsp: ENST00000418169.1:c.51G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6404G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.51G>T
  hgvsp: ENST00000412924.1:c.51G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46988
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3389
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro17Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

3-197476894-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476894
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476894
    reference: chr 3
allele count: 1
allele frequency: 9.087109027134107e-6
allele num: 110046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+373C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.52C>T
  hgvsp: ENSP00000409257.1:p.Pro18Ser
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.52C>T
  hgvsp: ENSP00000400191.1:p.Pro18Ser
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.52C>T
  hgvsp: ENSP00000241502.3:p.Pro18Ser
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+373C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6403C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+373C>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4226
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3416
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47417
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro18Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-197476898-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476898
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476898
    reference: chr 3
allele count: 1
allele frequency: 9.070294784580499e-6
allele num: 110250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6399C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.56C>G
  hgvsp: ENSP00000400191.1:p.Pro19Arg
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+377C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+377C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+377C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.56C>G
  hgvsp: ENSP00000409257.1:p.Pro19Arg
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.56C>G
  hgvsp: ENSP00000241502.3:p.Pro19Arg
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47629
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4723
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro19Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

3-197476899-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476899
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476899
    reference: chr 3
allele count: 2
allele frequency: 1.812480742392112e-5
allele num: 110346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+378G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+378G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6398G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+378G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.57G>A
  hgvsp: ENST00000241502.4:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.57G>A
  hgvsp: ENST00000412924.1:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.57G>A
  hgvsp: ENST00000418169.1:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro19Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP

3-197476899-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476899
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476899
    reference: chr 3
allele count: 1
allele frequency: 9.06240371196056e-6
allele num: 110346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+378G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.57G>T
  hgvsp: ENST00000241502.4:c.57G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6398G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.57G>T
  hgvsp: ENST00000418169.1:c.57G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+378G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.57G>T
  hgvsp: ENST00000412924.1:c.57G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+378G>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro19Pro
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

3-197476903-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476903
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476903
    reference: chr 3
allele count: 1
allele frequency: 9.05173974437887e-6
allele num: 110476
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.61G>T
  hgvsp: ENSP00000241502.3:p.Ala21Ser
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+382G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.61G>T
  hgvsp: ENSP00000409257.1:p.Ala21Ser
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+382G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+382G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6394G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.61G>T
  hgvsp: ENSP00000400191.1:p.Ala21Ser
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala21Ser
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/3-197476904-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476904
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476904
    reference: chr 3
allele count: 1
allele frequency: 9.052395263786798e-6
allele num: 110468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+383C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.62C>A
  hgvsp: ENSP00000409257.1:p.Ala21Asp
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+383C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.62C>A
  hgvsp: ENSP00000400191.1:p.Ala21Asp
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6393C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+383C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.62C>A
  hgvsp: ENSP00000241502.3:p.Ala21Asp
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42118
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala21Asp
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

3-197476913-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476913
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476913
    reference: chr 3
allele count: 1
allele frequency: 9.061418293191251e-6
allele num: 110358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6384A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+392A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.71A>G
  hgvsp: ENSP00000400191.1:p.Asn24Ser
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.71A>G
  hgvsp: ENSP00000241502.3:p.Asn24Ser
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+392A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+392A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.71A>G
  hgvsp: ENSP00000409257.1:p.Asn24Ser
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5386
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3388
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn24Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

3-197476915-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476915
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476915
    reference: chr 3
allele count: 1
allele frequency: 9.095208644086295e-6
allele num: 109948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+394G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6382G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.73G>A
  hgvsp: ENSP00000409257.1:p.Glu25Lys
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.73G>A
  hgvsp: ENSP00000241502.3:p.Glu25Lys
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+394G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.73G>A
  hgvsp: ENSP00000400191.1:p.Glu25Lys
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+394G>A
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu25Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

3-197476923-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476923
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476923
    reference: chr 3
allele count: 1
allele frequency: 9.180713157798098e-6
allele num: 108924
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.81C>T
  hgvsp: ENST00000241502.4:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+402C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+402C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.81C>T
  hgvsp: ENST00000418169.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+402C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.81C>T
  hgvsp: ENST00000412924.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6374C>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6970
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu27Leu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

3-197476933-GAT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476933
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476931
    reference: chr 3
allele count: 1
allele frequency: 9.52998132123661e-6
allele num: 104932
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.94_95delAT
  hgvsp: ENSP00000400191.1:p.Met32ValfsTer4
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.94_95delAT
  hgvsp: ENSP00000409257.1:p.Met32ValfsTer4
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+415_-141+416delAT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.94_95delAT
  hgvsp: ENSP00000241502.3:p.Met32ValfsTer4
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+415_-336+416delAT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+415_118+416delAT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6361_-98-6360delAT
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2860
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Met32ValfsTer4
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: GAT
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

3-197476937-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476937
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476937
    reference: chr 3
allele count: 1
allele frequency: 9.856878129558806e-6
allele num: 101452
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.95T>G
  hgvsp: ENSP00000409257.1:p.Met32Arg
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+416T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6360T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+416T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.95T>G
  hgvsp: ENSP00000241502.3:p.Met32Arg
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+416T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.95T>G
  hgvsp: ENSP00000400191.1:p.Met32Arg
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31407
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met32Arg
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

3-197476942-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476942
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476942
    reference: chr 3
allele count: 1
allele frequency: 1.002305302195049e-5
allele num: 99770
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+421T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+421T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.100T>C
  hgvsp: ENST00000418169.1:c.100T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6355T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.100T>C
  hgvsp: ENST00000241502.4:c.100T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+421T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.100T>C
  hgvsp: ENST00000412924.1:c.100T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17337
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu34Leu
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

3-197476950-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476950
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476950
    reference: chr 3
allele count: 1
allele frequency: 1.053097158743866e-5
allele num: 94958
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+429G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.103+5G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.103+5G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+429G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.103+5G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6347G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+429G>A
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5443
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2305
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 7.75e1
  variant carriers: 0
hgvs: c.103+5G>A
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

3-197476955-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476955
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476955
    reference: chr 3
allele count: 1
allele frequency: 1.158963423114366e-5
allele num: 86284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6342C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+434C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.103+10C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+434C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.103+10C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.103+10C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+434C>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9916
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5344
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3929
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/3-197476957-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476957
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476957
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 86600
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+436A>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.103+12A>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.103+12A>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6340A>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.103+12A>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+436A>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+436A>C
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12731
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3946
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

3-197476964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476964
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476964
    reference: chr 3
allele count: 4
allele frequency: 4.66059236128912e-5
allele num: 85826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6333C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+443C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.103+19C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+443C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.103+19C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+443C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.103+19C>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23698
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10385
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5223
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

3-197476965-CGAGTTGGAGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476965
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476955
    reference: chr 3
allele count: 1
allele frequency: 1.175806603329884e-5
allele num: 85048
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23962
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4302
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5308
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11220
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: CGAGTTGGAGT
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

3-197476967-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476967
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476967
    reference: chr 3
allele count: 1
allele frequency: 1.189966204959779e-5
allele num: 84036
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6330A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.103+22A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+446A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.103+22A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.103+22A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+446A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+446A>G
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2203
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5513
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4735
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10244
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: A
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

3-197476970-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476970
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476970
    reference: chr 3
allele count: 1
allele frequency: 1.213739531496541e-5
allele num: 82390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+449T>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.103+25T>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.103+25T>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+449T>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6327T>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.103+25T>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+449T>A
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4640
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13917
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5300
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5725
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8972
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

3-197476980-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197476980
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197476980
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 71840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-336+459G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.103+35G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-6317G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-141+459G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.103+35G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.103+35G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.118+459G>A
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16986
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23176
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6243
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7640
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5681
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

3-197482633-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197482633
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197482633
    reference: chr 3
allele count: 185
allele frequency: 8.543456174378867e-3
allele num: 21654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-664A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-664A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-664A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-664A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-664A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-664A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-48A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-664A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-243A>G
  variant of: http://identifiers.org/hgnc/25407
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 9.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 8
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

3-197482639-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197482639
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197482640
    reference: chr 3
allele count: 2
allele frequency: 9.236168837166343e-5
allele num: 21654
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-657dupT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-657dupT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-657dupT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-657dupT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-41dupT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-236dupT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-657dupT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-657dupT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-657dupT
  variant of: http://identifiers.org/hgnc/25407
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

3-197482647-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197482647
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197482647
    reference: chr 3
allele count: 1
allele frequency: 4.619791185438418e-5
allele num: 21646
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-650C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-650C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-650C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-650C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-34C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-650C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-650C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-229C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-650C>G
  variant of: http://identifiers.org/hgnc/25407
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-197482651-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197482651
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197482651
    reference: chr 3
allele count: 2
allele frequency: 9.232757824762257e-5
allele num: 21662
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-646G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-30G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-225G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-646G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-646G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-646G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-646G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-646G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-646G>A
  variant of: http://identifiers.org/hgnc/25407
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6114
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

3-197482658-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197482658
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197482658
    reference: chr 3
allele count: 2
allele frequency: 9.227646027498385e-5
allele num: 21674
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-639C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-639C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-639C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-639C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-639C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-639C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-23C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-218C>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-639C>T
  variant of: http://identifiers.org/hgnc/25407
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

3-197482659-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197482659
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197482659
    reference: chr 3
allele count: 1
allele frequency: 4.612120653076284e-5
allele num: 21682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-638G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-217G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-638G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-638G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-22G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-638G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-638G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-638G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-638G>A
  variant of: http://identifiers.org/hgnc/25407
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

3-197482667-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197482667
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197482667
    reference: chr 3
allele count: 1
allele frequency: 4.608294930875576e-5
allele num: 21700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-630G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-630G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.-14G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-630G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-630G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-209G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-630G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-630G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-630G>T
  variant of: http://identifiers.org/hgnc/25407
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

3-197482675-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197482675
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197482676
    reference: chr 3
allele count: 1
allele frequency: 4.605747973470892e-5
allele num: 21712
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-195dupA
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-616dupA
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.1dupA
  hgvsp: ENSP00000393746.2:p.Met1?
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-616dupA
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-616dupA
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-616dupA
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-616dupA
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-616dupA
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-616dupA
  variant of: http://identifiers.org/hgnc/25407
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

3-197482677-AAAAATGGAGCCTTCTGTGATTATGGGAAGTAAGTAGGAAAATGGAGGCTTCTGTGTTTTTGGGAAGTAAGTAGGAAAATGGACGCTTCTGCGATTATGGGAAGTAGGTAGG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197482677
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197482566
    reference: chr 3
allele count: 3
allele frequency: 1.381978993919292e-4
allele num: 21708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: 5_prime_UTR_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: 5_prime_UTR_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
canonical: false
consequence: splice donor
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: AAAAATGGAGCCTTCTGTGATTATGGGAAGTAAGTAGGAAAATGGAGGCTTCTGTGTTTTTGGGAAGTAAGTAGGAAAATGGACGCTTCTGCGATTATGGGAAGTAGGTAGG
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/3-197482687-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197482687
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197482687
    reference: chr 3
allele count: 1
allele frequency: 4.609144542772861e-5
allele num: 21696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-610C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-610C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-189C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-610C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.7C>A
  hgvsp: ENSP00000393746.2:p.Pro3Thr
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-610C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-610C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-610C>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-610C>A
  variant of: http://identifiers.org/hgnc/25407
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro3Thr
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

3-197482687-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197482687
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197482687
    reference: chr 3
allele count: 942
allele frequency: 4.341814159292035e-2
allele num: 21696
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-610C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-610C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-610C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-189C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-610C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.7C>G
  hgvsp: ENSP00000393746.2:p.Pro3Ala
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-610C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-610C>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-610C>G
  variant of: http://identifiers.org/hgnc/25407
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 9.75e1
  variant carriers: 398
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6584
  bin: 9.75e1
  variant carriers: 888
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 3
hgvs: p.Pro3Ala
num of homozygotes: 54
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

3-197482696-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197482696
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197482695
    reference: chr 3
allele count: 3
allele frequency: 1.381597126277977e-4
allele num: 21714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.18delT
  hgvsp: ENSP00000393746.2:p.Met7TrpfsTer8
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-599delT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-599delT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-599delT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-599delT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-178delT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-599delT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-599delT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-599delT
  variant of: http://identifiers.org/hgnc/25407
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6515
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met7TrpfsTer8
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: AT
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

3-197482699-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197482699
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197482699
    reference: chr 3
allele count: 1
allele frequency: 4.605323754259925e-5
allele num: 21714
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-598A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-598A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.19A>G
  hgvsp: ENSP00000393746.2:p.Met7Val
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-598A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-598A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-598A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-598A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-177A>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-598A>G
  variant of: http://identifiers.org/hgnc/25407
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6514
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met7Val
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

3-197482720-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197482720
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197482720
    reference: chr 3
allele count: 4
allele frequency: 1.842299189388357e-4
allele num: 21712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-577G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-577G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-577G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-577G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-577G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-577G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.25+15G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-577G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-171+15G>A
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

3-197482723-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197482723
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197482723
    reference: chr 3
allele count: 1
allele frequency: 4.605747973470892e-5
allele num: 21712
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-574G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-574G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.25+18G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-171+18G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-574G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-574G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-574G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-574G>A
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-574G>A
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6537
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

3-197482723-GGCTTCTGTGTTTTTGGGAAGTAAGTAGGAAAATGGAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197482723
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197482686
    reference: chr 3
allele count: 24
allele frequency: 1.105379513633014e-3
allele num: 21712
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6537
  bin: 9.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: GGCTTCTGTGTTTTTGGGAAGTAAGTAGGAAAATGGAC
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

3-197482737-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197482737
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197482737
    reference: chr 3
allele count: 1
allele frequency: 4.609569466211856e-5
allele num: 21694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-560T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-560T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-560T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-560T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-560T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-171+32T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-560T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.25+32T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-560T>G
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP

3-197483247-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197483247
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197483247
    reference: chr 3
allele count: 1
allele frequency: 9.891001167138137e-6
allele num: 101102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-50G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-50G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-50G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-50G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-50G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-50G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.26-50G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-170-50G>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-50G>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6993
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

3-197483247-GTAAT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197483247
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197483243
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 101102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-48_104-45delAATT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-48_-98-45delAATT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-48_-98-45delAATT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-48_-98-45delAATT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-48_104-45delAATT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.26-48_26-45delAATT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-170-48_-170-45delAATT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-48_104-45delAATT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-48_119-45delAATT
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8726
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6512
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: GTAAT
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

3-197483250-A-AAGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197483250
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197483253
    reference: chr 3
allele count: 1
allele frequency: 9.859404886321061e-6
allele num: 101426
alternate allele: AAGG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.26-47_26-46insAGG
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-47_104-46insAGG
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-47_-98-46insAGG
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-47_104-46insAGG
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-47_104-46insAGG
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-47_-98-46insAGG
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-47_-98-46insAGG
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-170-47_-170-46insAGG
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-47_119-46insAGG
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16029
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3213
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3882
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2576
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP

3-197483250-ATTGAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197483250
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197483245
    reference: chr 3
allele count: 12
allele frequency: 1.183128586358527e-4
allele num: 101426
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-44_-98-40delGAGTT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-170-44_-170-40delGAGTT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-44_104-40delGAGTT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-44_-98-40delGAGTT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-44_104-40delGAGTT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-44_104-40delGAGTT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.26-44_26-40delGAGTT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-44_119-40delGAGTT
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-44_-98-40delGAGTT
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11920
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4264
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8646
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16029
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6479
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2576
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: ATTGAG
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

3-197483251-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197483251
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197483251
    reference: chr 3
allele count: 1
allele frequency: 9.846202319765266e-6
allele num: 101562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-46T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-46T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-46T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.26-46T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-46T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-46T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-46T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-170-46T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-46T>C
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11429
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7848
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6991
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-197483251-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197483251
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197483251
    reference: chr 3
allele count: 1
allele frequency: 9.846202319765266e-6
allele num: 101562
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-46T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-46T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-170-46T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-46T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.26-46T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-46T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-46T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-46T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-46T>G
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16008
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7848
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4920
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ

3-197483262-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197483262
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197483262
    reference: chr 3
allele count: 1
allele frequency: 9.736339915099116e-6
allele num: 102708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-35T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-35T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-35T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.26-35T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-35T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-170-35T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-35T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-35T>G
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-35T>G
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5336
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5969
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-197483269-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197483269
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197483269
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 104470
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-28A>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-28A>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-28A>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-28A>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.26-28A>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-28A>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-28A>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-28A>T
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-170-28A>T
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8045
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4360
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24126
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP

3-197483277-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197483277
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197483277
    reference: chr 3
allele count: 1
allele frequency: 9.223220379627751e-6
allele num: 108422
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000393746
  ensembl transcript: ENST00000415708
  gene symbol: FYTTD1
  hgvsc: ENST00000415708.2:c.26-20T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000389557
  ensembl transcript: ENST00000426031
  gene symbol: FYTTD1
  hgvsc: ENST00000426031.1:c.-98-20T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000391157
  ensembl transcript: ENST00000428395
  gene symbol: FYTTD1
  hgvsc: ENST00000428395.2:c.-170-20T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000400191
  ensembl transcript: ENST00000418169
  gene symbol: FYTTD1
  hgvsc: ENST00000418169.1:c.104-20T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000417742
  ensembl transcript: ENST00000494309
  gene symbol: FYTTD1
  hgvsc: ENST00000494309.1:c.119-20T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000409257
  ensembl transcript: ENST00000412924
  gene symbol: FYTTD1
  hgvsc: ENST00000412924.1:c.104-20T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000394631
  ensembl transcript: ENST00000424384
  gene symbol: FYTTD1
  hgvsc: ENST00000424384.2:c.-98-20T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000399896
  ensembl transcript: ENST00000428738
  gene symbol: FYTTD1
  hgvsc: ENST00000428738.1:c.-98-20T>C
  variant of: http://identifiers.org/hgnc/25407
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122068
  ensembl protein: ENSP00000241502
  ensembl transcript: ENST00000241502
  gene symbol: FYTTD1
  hgvsc: ENST00000241502.4:c.104-20T>C
  variant of: http://identifiers.org/hgnc/25407
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6997
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2043
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 4678
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6880
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 205
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30766
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6245
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 2.006018054162487e-3
allele num: 1994
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1940
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.54e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.55896e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 7.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

GenotypeQuality
all individuals: 108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30872
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4508
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7814
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 2.037489812550937e-3
allele num: 2454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.437e1

DP
type: SiteQuality
SIO_000300: 5.77733e5

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.52e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

GenotypeQuality
all individuals: 1721
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2198
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.262945188178833e-4
allele num: 7918
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1648
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.86455e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.597e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

QD
type: SiteQuality
SIO_000300: 9.69e0

GenotypeQuality
all individuals: 367
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5339
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30869
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.591368227731864e-5
allele num: 21780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.671e0

QD
type: SiteQuality
SIO_000300: 1.114e1

FS
type: SiteQuality
SIO_000300: 3.468e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.323e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

DP
type: SiteQuality
SIO_000300: 6.24832e5

GenotypeQuality
all individuals: 714
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3721
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3400
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 5.0886269188364e-4
allele num: 23582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2734
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

FS
type: SiteQuality
SIO_000300: 3.213e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.168e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.06e-2

DP
type: SiteQuality
SIO_000300: 6.58774e5

GenotypeQuality
all individuals: 68
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 29979
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variant carriers: 0

GenotypeQuality
all individuals: 12103
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.2721567297091e-4
allele num: 23582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.06e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

FS
type: SiteQuality
SIO_000300: 3.213e0

DP
type: SiteQuality
SIO_000300: 6.58774e5

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

QD
type: SiteQuality
SIO_000300: 1.168e1

GenotypeQuality
all individuals: 3294
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4210
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 478
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3286
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.03446e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

MQ
type: SiteQuality
SIO_000300: 5.177e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.422e0

QD
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: -2.054e0

VQSLOD
type: SiteQuality
SIO_000300: -9.307e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.07e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 501
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2700
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27718
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3002
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variant carriers: 0

GenotypeQuality
all individuals: 442
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variant carriers: 0

GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
all individuals: 16843
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.477777004938444e-5
allele num: 28754
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.00928542591845e-4
allele num: 9908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.733734281027884e-4
allele num: 3658
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.069e1

VQSLOD
type: SiteQuality
SIO_000300: 6.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 7.34092e5

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26527
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
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variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18493
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2472
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.563833278634722e-5
allele num: 30470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.924646781789639e-4
allele num: 2548
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 1.496e1

DP
type: SiteQuality
SIO_000300: 7.643e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.61e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.44e-1

FS
type: SiteQuality
SIO_000300: 2.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.02e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

GenotypeQuality
all individuals: 3279
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1422
bin: 6.75e1
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GenotypeQuality
all individuals: 283
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24833
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33218
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.85459940652819e-4
allele num: 10784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4230
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 8.02316e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.572e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.931e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

GenotypeQuality
all individuals: 369
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2245
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 642
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.199736031676199e-4
allele num: 4546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11258
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

DP
type: SiteQuality
SIO_000300: 8.38119e5

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.622e0

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.403037439323305e-5
allele num: 41614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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ClippingRankSum
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SIO_000300: -1.1e-2

FS
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MQRankSum
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MQ
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DP
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VQSLOD
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InbreedingCoeff
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SIO_000300: -6.3e-3

QD
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ReadPosRankSum
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SIO_000300: 4.17e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 7.757951900698215e-5
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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DP
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MQRankSum
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QD
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InbreedingCoeff
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MQ
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BaseQRankSum
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FS
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 586
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.262853005068791e-5
allele num: 44192
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 3794
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 5778
num of homozygotes: 0

VQSLOD
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MQ
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FS
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QD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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DP
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SIO_000300: 9.773e5

InbreedingCoeff
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SIO_000300: 6.4e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.62813415825464e-4
allele num: 6142
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -3.165e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.83e-1

VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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DP
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SIO_000300: 1.026729e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.19e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4514
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 2.93513354857646e-4
allele num: 6814
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9012
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 51662
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

MQRankSum
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QD
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.08e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.106407e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 14594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 53500
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African
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allele count: 1
allele frequency: 1.407657657657658e-4
allele num: 7104
num of homozygotes: 0

Latino
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allele frequency: 1.044932079414838e-4
allele num: 9570
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.75e-1

VQSLOD
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MQ
type: SiteQuality
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FS
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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DP
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ReadPosRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.783739431343869e-5
allele num: 56062
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MQRankSum
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ReadPosRankSum
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FS
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SIO_000300: 0.0e0

DP
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
type: Population
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African
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 5100
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FS
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MQ
type: SiteQuality
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BaseQRankSum
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DP
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ClippingRankSum
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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African
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Latino
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MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
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QD
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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DP
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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African
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East Asian
type: Population
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Other
type: Population
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allele num: 792
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15862
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.702e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 1.252717e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.362e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

QD
type: SiteQuality
SIO_000300: 1.561e1

MQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-1

GenotypeQuality
all individuals: 512
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 198
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3395
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.344146072300438e-5
allele num: 59806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15888
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

MQ
type: SiteQuality
SIO_000300: 5.835e1

QD
type: SiteQuality
SIO_000300: 8.16e0

DP
type: SiteQuality
SIO_000300: 1.255467e6

VQSLOD
type: SiteQuality
SIO_000300: -2.951e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.488e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

FS
type: SiteQuality
SIO_000300: 2.749e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.268e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 406
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variant carriers: 0

GenotypeQuality
all individuals: 47368
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.33667000333667e-5
allele num: 59940
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.48e-1

FS
type: SiteQuality
SIO_000300: 1.128e0

VQSLOD
type: SiteQuality
SIO_000300: 4.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

DP
type: SiteQuality
SIO_000300: 1.259818e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.06e-1

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

GenotypeQuality
all individuals: 190
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59940
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.288517167651867e-4
allele num: 15902
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8034
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.06e-1

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

FS
type: SiteQuality
SIO_000300: 1.128e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

DP
type: SiteQuality
SIO_000300: 1.259818e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.48e-1

GenotypeQuality
all individuals: 1227
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 603
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variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.6628421297682e-5
allele num: 60138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10960
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

DP
type: SiteQuality
SIO_000300: 1.263994e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

VQSLOD
type: SiteQuality
SIO_000300: 6.43e-1

FS
type: SiteQuality
SIO_000300: 9.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

QD
type: SiteQuality
SIO_000300: 1.199e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4627
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 169
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GenotypeQuality
all individuals: 324
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GenotypeQuality
all individuals: 614
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GenotypeQuality
all individuals: 207
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GenotypeQuality
all individuals: 100
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GenotypeQuality
all individuals: 167
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variant carriers: 0

GenotypeQuality
all individuals: 460
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GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.660412446451699e-5
allele num: 60226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10964
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

FS
type: SiteQuality
SIO_000300: 3.788e0

QD
type: SiteQuality
SIO_000300: 8.82e0

VQSLOD
type: SiteQuality
SIO_000300: 4.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

DP
type: SiteQuality
SIO_000300: 1.264867e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeQuality
all individuals: 209
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
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variant carriers: 0

GenotypeQuality
all individuals: 99
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GenotypeQuality
all individuals: 112
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GenotypeQuality
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GenotypeQuality
all individuals: 357
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GenotypeQuality
all individuals: 101
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 303
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GenotypeQuality
all individuals: 520
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.656836105772417e-5
allele num: 60356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5800
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.725e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.24e-1

QD
type: SiteQuality
SIO_000300: 1.137e1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

DP
type: SiteQuality
SIO_000300: 1.268437e6

MQ
type: SiteQuality
SIO_000300: 5.914e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

GenotypeQuality
all individuals: 520
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 53
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.210946960523129e-4
allele num: 8258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.655519502019734e-5
allele num: 60404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

FS
type: SiteQuality
SIO_000300: 6.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 1.270085e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 97
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GenotypeQuality
all individuals: 50
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.655519502019734e-5
allele num: 60404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.270085e6

MQRankSum
type: SiteQuality
SIO_000300: 7.59e-1

FS
type: SiteQuality
SIO_000300: 6.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.41e0

GenotypeQuality
all individuals: 3409
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 98
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GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.652619401751776e-5
allele num: 60510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5820
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.94e-1

DP
type: SiteQuality
SIO_000300: 1.270838e6

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.34e-1

QD
type: SiteQuality
SIO_000300: 1.08e1

GenotypeQuality
all individuals: 47801
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
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variant carriers: 0

GenotypeQuality
all individuals: 4857
bin: 2.25e1
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GenotypeQuality
all individuals: 53
bin: 2.5e0
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GenotypeQuality
all individuals: 98
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.652400938563733e-5
allele num: 60518
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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FS
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DP
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele num: 15852
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FS
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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QD
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DP
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ClippingRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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allele frequency: 0.0e0
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Latino
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ReadPosRankSum
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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FS
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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allele frequency: 0.0e0
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Latino
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African
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.672744304305644e-5
allele num: 59782
num of homozygotes: 0

East Asian
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ReadPosRankSum
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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MQ
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.734725739860528e-5
allele num: 57646
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: 6.25e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.162292e6

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.771e1

FS
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.66e-1

MQRankSum
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SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 7594
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.795525550328581e-5
allele num: 55694
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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Other
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MQ
type: SiteQuality
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QD
type: SiteQuality
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FS
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 14874
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Other
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BaseQRankSum
type: SiteQuality
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MQ
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DP
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QD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
type: Population
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African
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele num: 8930
num of homozygotes: 0

European (Non-Finnish)
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East Asian
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MQRankSum
type: SiteQuality
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ClippingRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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Other
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South Asian
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European (Finnish)
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Latino
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ClippingRankSum
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BaseQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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DP
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MQRankSum
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InbreedingCoeff
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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African
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 4.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.20808e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.29e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.552125203112974e-5
allele num: 46772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13832
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.06e-2

MQ
type: SiteQuality
SIO_000300: 5.833e1

VQSLOD
type: SiteQuality
SIO_000300: -8.635e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.299e0

FS
type: SiteQuality
SIO_000300: 1.1687e1

MQRankSum
type: SiteQuality
SIO_000300: 4.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

DP
type: SiteQuality
SIO_000300: 8.12055e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-2

QD
type: SiteQuality
SIO_000300: 8.380000000000001e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.158801433444152e-5
allele num: 46322
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.28e0

MQRankSum
type: SiteQuality
SIO_000300: -1.635e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.13e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.02899e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 5.281e1

QD
type: SiteQuality
SIO_000300: 5.13e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7608
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.613423685059697e-4
allele num: 6198
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.82694e5

FS
type: SiteQuality
SIO_000300: 3.054e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

QD
type: SiteQuality
SIO_000300: 1.025e1

VQSLOD
type: SiteQuality
SIO_000300: 7.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.17e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 131
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44758
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.318501170960187e-5
allele num: 13664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.399e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-2

DP
type: SiteQuality
SIO_000300: 7.62189e5

VQSLOD
type: SiteQuality
SIO_000300: 9.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.244e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.75e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12972
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4938
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.878e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.528e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.74e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

DP
type: SiteQuality
SIO_000300: 6.9007e5

VQSLOD
type: SiteQuality
SIO_000300: -1.976e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 176

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
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Latino
type: Population
allele count: 3
allele frequency: 7.352941176470588e-3
allele num: 408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.144950767117014e-4
allele num: 8734
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1624
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African
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allele count: 180
allele frequency: 8.403361344537816e-2
allele num: 2142
num of homozygotes: 8

South Asian
type: Population
allele count: 1
allele frequency: 1.26806999746386e-4
allele num: 7886
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

MQ
type: SiteQuality
SIO_000300: 5.473e1

DP
type: SiteQuality
SIO_000300: 6.96291e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.71e1

VQSLOD
type: SiteQuality
SIO_000300: 5.78e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8732
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 2.53613999492772e-4
allele num: 7886
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 618
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.889999999999999e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.98556e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
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European (Finnish)
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allele frequency: 0.0e0
allele num: 1624
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South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 2140
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.145737855178735e-4
allele num: 8728
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.0181e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.01215e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.532928064842959e-4
allele num: 7896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.011e1

MQ
type: SiteQuality
SIO_000300: 5.729e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.31e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -2.124e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.02635e5

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 7.5e0
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GenotypeQuality
all individuals: 516
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6136
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.289901534234028e-4
allele num: 8734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.571e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.02e-1

MQ
type: SiteQuality
SIO_000300: 5.469e1

VQSLOD
type: SiteQuality
SIO_000300: 2.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-2

DP
type: SiteQuality
SIO_000300: 7.0443e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

GenotypeQuality
all individuals: 6143
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.144688644688645e-4
allele num: 8736
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.04804e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

QD
type: SiteQuality
SIO_000300: 1.204e1

VQSLOD
type: SiteQuality
SIO_000300: -1.095e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.32e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.38e-1

MQ
type: SiteQuality
SIO_000300: 5.453e1

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 963
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 25
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6152
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 688
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.659832246039142e-4
allele num: 2146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8744
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

MQ
type: SiteQuality
SIO_000300: 5.457e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.159999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.372e1

FS
type: SiteQuality
SIO_000300: 1.628e0

DP
type: SiteQuality
SIO_000300: 7.05665e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.39e0

VQSLOD
type: SiteQuality
SIO_000300: -9.014e-1

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 635
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 398
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variant carriers: 0

GenotypeQuality
all individuals: 519
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variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 6.157635467980296e-4
allele num: 1624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

MQ
type: SiteQuality
SIO_000300: 5.24e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.85e-1

QD
type: SiteQuality
SIO_000300: 1.228e1

FS
type: SiteQuality
SIO_000300: 1.296e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 7.0586e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 522
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variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 687
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variant carriers: 0

GenotypeQuality
all individuals: 6152
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 520
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variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.142857142857143e-4
allele num: 8750
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 9.319664492078285e-4
allele num: 2146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.219e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

QD
type: SiteQuality
SIO_000300: 3.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.331e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

FS
type: SiteQuality
SIO_000300: 6.7919e1

MQ
type: SiteQuality
SIO_000300: 5.331e1

DP
type: SiteQuality
SIO_000300: 7.06655e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.98e0

GenotypeQuality
all individuals: 152
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6584
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 946
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 364
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 4.686035613870666e-4
allele num: 2134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.110000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.447e1

DP
type: SiteQuality
SIO_000300: 7.60029e5

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.108e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

QD
type: SiteQuality
SIO_000300: 1.366e1

GenotypeQuality
all individuals: 478
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 2

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 625
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 30
allele frequency: 4.823151125401929e-2
allele num: 622
num of homozygotes: 1

African
type: Population
allele count: 404
allele frequency: 1.893158388003749e-1
allele num: 2134
num of homozygotes: 42

Latino
type: Population
allele count: 26
allele frequency: 6.341463414634146e-2
allele num: 410
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 18
allele frequency: 1.108374384236453e-2
allele num: 1624
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 4.132231404958678e-2
allele num: 242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 137
allele frequency: 1.565356489945155e-2
allele num: 8752
num of homozygotes: 2

South Asian
type: Population
allele count: 317
allele frequency: 4.006572295247725e-2
allele num: 7912
num of homozygotes: 8

QD
type: SiteQuality
SIO_000300: 1.366e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.110000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

DP
type: SiteQuality
SIO_000300: 7.60029e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.108e0

MQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

MQ
type: SiteQuality
SIO_000300: 5.447e1

GenotypeQuality
all individuals: 1085
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 375
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 595
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 487
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8756
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.82315112540193e-3
allele num: 622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2146
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.1216e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.26e-2

MQ
type: SiteQuality
SIO_000300: 5.575e1

VQSLOD
type: SiteQuality
SIO_000300: -1.174e0

QD
type: SiteQuality
SIO_000300: 1.404e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.252e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-1

DP
type: SiteQuality
SIO_000300: 7.56127e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
all individuals: 114
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 630
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GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 495
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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European (Non-Finnish)
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Latino
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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FS
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MQ
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 7914
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Other
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East Asian
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European (Finnish)
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African
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VQSLOD
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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BaseQRankSum
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MQ
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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Other
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East Asian
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European (Finnish)
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MQ
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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VQSLOD
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DP
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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Other
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allele num: 242
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African
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 23
allele frequency: 2.62737034498515e-3
allele num: 8754
num of homozygotes: 0

MQ
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ClippingRankSum
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FS
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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Other
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South Asian
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Latino
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European (Non-Finnish)
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MQ
type: SiteQuality
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MQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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African
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Other
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ClippingRankSum
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InbreedingCoeff
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FS
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MQ
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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European (Finnish)
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Other
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InbreedingCoeff
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DP
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MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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QD
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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European (Non-Finnish)
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East Asian
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South Asian
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MQ
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FS
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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Other
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South Asian
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Latino
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ClippingRankSum
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MQRankSum
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QD
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VQSLOD
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SIO_000300: 3.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

DP
type: SiteQuality
SIO_000300: 1.308125e6

MQ
type: SiteQuality
SIO_000300: 5.3e1

GenotypeQuality
all individuals: 769
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4920
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3893
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2416
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2940
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7283
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6481
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5954
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 786
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.826870562534134e-5
allele num: 14648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.14e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

DP
type: SiteQuality
SIO_000300: 1.310494e6

VQSLOD
type: SiteQuality
SIO_000300: 3.95e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.218e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

GenotypeQuality
all individuals: 6481
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2416
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2940
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6991
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.826870562534134e-5
allele num: 14648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54692
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

QD
type: SiteQuality
SIO_000300: 1.218e1

VQSLOD
type: SiteQuality
SIO_000300: 3.95e0

DP
type: SiteQuality
SIO_000300: 1.310494e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.14e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3793
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18341
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8493
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5876
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3404
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.806097384770987e-5
allele num: 55368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.394108e6

QD
type: SiteQuality
SIO_000300: 2.596e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: -8.516999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

GenotypeQuality
all individuals: 723
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1530
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2436
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56340
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.45e1

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.464833e6

GenotypeQuality
all individuals: 116
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6319
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29910
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5042
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 8.75e1
variant carriers: 0