2-38523303-AAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523303
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523301
    reference: chr 2
allele count: 1
allele frequency: 4.845900368288428e-5
allele num: 20636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.*320_*321delCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.*320_*321delCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-50_1120-49delCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-50_1633-49delCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.*320_*321delCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-50_1120-49delCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-50_*1238-49delCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-50_1579-49delCT
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: AAG
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS

2-38523304-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523304
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523304
    reference: chr 2
allele count: 1
allele frequency: 4.88615264340858e-5
allele num: 20466
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-49T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.*321T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.*321T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-49T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-49T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.*321T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-49T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-49T>C
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2367
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ

2-38523576-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523576
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523576
    reference: chr 2
allele count: 1
allele frequency: 2.335248236887581e-5
allele num: 42822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.*49T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-321T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.*49T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.*49T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-321T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-321T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-321T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.*49T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-321T>C
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13054
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25754
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14149
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

2-38523577-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523577
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523577
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 42780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-322A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-322A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.*48A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.*48A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.*48A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.*48A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-322A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-322A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-322A>G
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 13030
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25763
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14090
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3433
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5930
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4587
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

2-38523579-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523579
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523579
    reference: chr 2
allele count: 1
allele frequency: 2.337540906965872e-5
allele num: 42780
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.*46A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-324A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-324A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.*46A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-324A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-324A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.*46A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.*46A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-324A>T
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12945
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8493
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4894
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

2-38523580-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523580
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523580
    reference: chr 2
allele count: 1
allele frequency: 2.336230258854313e-5
allele num: 42804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.*45C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-325C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.*45C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-325C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.*45C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-325C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.*45C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-325C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-325C>T
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12883
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3434
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5704
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9015
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

2-38523584-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523584
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523584
    reference: chr 2
allele count: 4
allele frequency: 9.298865538404315e-5
allele num: 43016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.*41C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.*41C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-329C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-329C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-329C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.*41C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.*41C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-329C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-329C>T
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12441
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8562
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5278
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18127
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD

2-38523587-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523587
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523586
    reference: chr 2
allele count: 1
allele frequency: 2.307763315794332e-5
allele num: 43332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-333delC
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.*37delC
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.*37delC
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.*37delC
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.*37delC
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-333delC
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-333delC
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-333delC
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-333delC
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11880
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4871
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: TG
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

2-38523591-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523591
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523591
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 43796
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-336G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.*34G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-336G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-336G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-336G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.*34G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.*34G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-336G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.*34G>A
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27296
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11010
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21398
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-38523595-TCAGA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523595
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523591
    reference: chr 2
allele count: 1
allele frequency: 2.24901043540842e-5
allele num: 44464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-344_1120-341delTCTG
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-344_1579-341delTCTG
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-344_1633-341delTCTG
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.*26_*29delTCTG
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.*26_*29delTCTG
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.*26_*29delTCTG
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.*26_*29delTCTG
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-344_*1238-341delTCTG
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-344_1120-341delTCTG
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3531
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3771
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: TCAGA
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum

2-38523611-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523611
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523611
    reference: chr 2
allele count: 1
allele frequency: 1.882175795219273e-5
allele num: 53130
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-356C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-356C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-356C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-356C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.*14C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.*14C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.*14C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.*14C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-356C>T
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30839
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7576
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

2-38523612-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523612
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523612
    reference: chr 2
allele count: 2
allele frequency: 3.714572267003454e-5
allele num: 53842
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-357A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-357A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.*13A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.*13A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-357A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-357A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.*13A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.*13A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-357A>G
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7561
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3066
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

2-38523618-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523618
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523619
    reference: chr 2
allele count: 5
allele frequency: 8.345294922722568e-5
allele num: 59914
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-364_1120-363insC
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.*6_*7insC
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-364_1120-363insC
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-364_1633-363insC
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.*6_*7insC
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.*6_*7insC
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-364_*1238-363insC
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-364_1579-363insC
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.*6_*7insC
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6784
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28957
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS

2-38523643-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523643
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523643
    reference: chr 2
allele count: 13
allele frequency: 1.271965872177214e-4
allele num: 102204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1224T>A
  hgvsp: ENSP00000438938.1:p.Asn408Lys
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1722T>A
  hgvsp: ENSP00000415336.2:p.Asn574Lys
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-388T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-388T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-388T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1683T>A
  hgvsp: ENSP00000333393.4:p.Asn561Lys
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1224T>A
  hgvsp: ENSP00000385446.1:p.Asn408Lys
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-388T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-388T>A
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 37769
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6670
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2841
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn408Lys
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

2-38523650-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523650
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523650
    reference: chr 2
allele count: 1
allele frequency: 9.17094644167278e-6
allele num: 109040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-395C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1715C>T
  hgvsp: ENSP00000415336.2:p.Ser572Phe
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1217C>T
  hgvsp: ENSP00000385446.1:p.Ser406Phe
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-395C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-395C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1217C>T
  hgvsp: ENSP00000438938.1:p.Ser406Phe
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1676C>T
  hgvsp: ENSP00000333393.4:p.Ser559Phe
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-395C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-395C>T
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41067
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44730
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser406Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

2-38523665-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523665
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523665
    reference: chr 2
allele count: 12
allele frequency: 1.044604617152408e-4
allele num: 114876
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-410G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1202G>A
  hgvsp: ENSP00000438938.1:p.Arg401Gln
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1202G>A
  hgvsp: ENSP00000385446.1:p.Arg401Gln
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-410G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1700G>A
  hgvsp: ENSP00000415336.2:p.Arg567Gln
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1661G>A
  hgvsp: ENSP00000333393.4:p.Arg554Gln
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-410G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-410G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-410G>A
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8499
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43275
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg401Gln
num of homozygotes: 1
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD

2-38523681-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523681
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523681
    reference: chr 2
allele count: 1
allele frequency: 8.542189875796559e-6
allele num: 117066
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-426C>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-426C>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-426C>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1684C>G
  hgvsp: ENSP00000415336.2:p.Leu562Val
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1186C>G
  hgvsp: ENSP00000438938.1:p.Leu396Val
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1645C>G
  hgvsp: ENSP00000333393.4:p.Leu549Val
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-426C>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1186C>G
  hgvsp: ENSP00000385446.1:p.Leu396Val
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-426C>G
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu396Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-38523682-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523682
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523682
    reference: chr 2
allele count: 13
allele frequency: 1.110200177632028e-4
allele num: 117096
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1683T>C
  hgvsp: ENST00000419554.2:c.1683T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1185T>C
  hgvsp: ENST00000406122.1:c.1185T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-427T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-427T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1185T>C
  hgvsp: ENST00000546051.1:c.1185T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1644T>C
  hgvsp: ENST00000332337.4:c.1644T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-427T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-427T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-427T>C
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43362
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala395Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

2-38523686-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523686
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523686
    reference: chr 2
allele count: 2
allele frequency: 1.706834163992627e-5
allele num: 117176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1640G>A
  hgvsp: ENSP00000333393.4:p.Arg547His
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-431G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1679G>A
  hgvsp: ENSP00000415336.2:p.Arg560His
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-431G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1181G>A
  hgvsp: ENSP00000385446.1:p.Arg394His
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1181G>A
  hgvsp: ENSP00000438938.1:p.Arg394His
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-431G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-431G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-431G>A
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 43060
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3572
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg394His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

2-38523687-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523687
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523687
    reference: chr 2
allele count: 1
allele frequency: 8.533296924599789e-6
allele num: 117188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1180C>T
  hgvsp: ENSP00000438938.1:p.Arg394Cys
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-432C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-432C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-432C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-432C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1678C>T
  hgvsp: ENSP00000415336.2:p.Arg560Cys
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1639C>T
  hgvsp: ENSP00000333393.4:p.Arg547Cys
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1180C>T
  hgvsp: ENSP00000385446.1:p.Arg394Cys
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-432C>T
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg394Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

2-38523696-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523696
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523696
    reference: chr 2
allele count: 1
allele frequency: 8.554173581290312e-6
allele num: 116902
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1171A>G
  hgvsp: ENSP00000438938.1:p.Met391Val
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1669A>G
  hgvsp: ENSP00000415336.2:p.Met557Val
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1171A>G
  hgvsp: ENSP00000385446.1:p.Met391Val
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-441A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1630A>G
  hgvsp: ENSP00000333393.4:p.Met544Val
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-441A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-441A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-441A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-441A>G
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met391Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

2-38523698-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523698
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523698
    reference: chr 2
allele count: 1
allele frequency: 8.569274011105779e-6
allele num: 116696
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-443G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1667G>A
  hgvsp: ENSP00000415336.2:p.Arg556Gln
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-443G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1169G>A
  hgvsp: ENSP00000438938.1:p.Arg390Gln
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-443G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-443G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1628G>A
  hgvsp: ENSP00000333393.4:p.Arg543Gln
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1169G>A
  hgvsp: ENSP00000385446.1:p.Arg390Gln
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-443G>A
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41871
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg390Gln
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

2-38523699-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523699
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523699
    reference: chr 2
allele count: 9
allele frequency: 7.713139762092489e-5
allele num: 116684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-444C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1168C>T
  hgvsp: ENSP00000438938.1:p.Arg390Ter
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-444C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1168C>T
  hgvsp: ENSP00000385446.1:p.Arg390Ter
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1666C>T
  hgvsp: ENSP00000415336.2:p.Arg556Ter
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-444C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-444C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1627C>T
  hgvsp: ENSP00000333393.4:p.Arg543Ter
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-444C>T
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg390Ter
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

2-38523701-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523701
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523701
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 116462
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-446G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1166G>A
  hgvsp: ENSP00000385446.1:p.Arg389His
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1625G>A
  hgvsp: ENSP00000333393.4:p.Arg542His
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1166G>A
  hgvsp: ENSP00000438938.1:p.Arg389His
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-446G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-446G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-446G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-446G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1664G>A
  hgvsp: ENSP00000415336.2:p.Arg555His
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41446
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3527
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg389His
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-38523702-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523702
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523702
    reference: chr 2
allele count: 9
allele frequency: 7.725454514240588e-5
allele num: 116498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1165C>T
  hgvsp: ENSP00000385446.1:p.Arg389Cys
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-447C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1624C>T
  hgvsp: ENSP00000333393.4:p.Arg542Cys
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-447C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1165C>T
  hgvsp: ENSP00000438938.1:p.Arg389Cys
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-447C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1663C>T
  hgvsp: ENSP00000415336.2:p.Arg555Cys
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-447C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-447C>T
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10335
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg389Cys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

2-38523705-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523705
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523705
    reference: chr 2
allele count: 1
allele frequency: 8.607629803057431e-6
allele num: 116176
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1621A>C
  hgvsp: ENST00000332337.4:c.1621A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1660A>C
  hgvsp: ENST00000419554.2:c.1660A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-450A>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-450A>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1162A>C
  hgvsp: ENST00000406122.1:c.1162A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-450A>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-450A>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-450A>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1162A>C
  hgvsp: ENST00000546051.1:c.1162A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41139
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg388Arg
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-38523710-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523710
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523710
    reference: chr 2
allele count: 1
allele frequency: 8.667614325832958e-6
allele num: 115372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1157T>C
  hgvsp: ENSP00000438938.1:p.Val386Ala
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1157T>C
  hgvsp: ENSP00000385446.1:p.Val386Ala
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-455T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-455T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-455T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1616T>C
  hgvsp: ENSP00000333393.4:p.Val539Ala
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-455T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1655T>C
  hgvsp: ENSP00000415336.2:p.Val552Ala
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-455T>C
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val386Ala
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum

http://identifiers.org/exac.variant/2-38523715-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523715
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523715
    reference: chr 2
allele count: 1
allele frequency: 8.743704532736431e-6
allele num: 114368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-460T>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1650T>G
  hgvsp: ENSP00000415336.2:p.Phe550Leu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-460T>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1611T>G
  hgvsp: ENSP00000333393.4:p.Phe537Leu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1152T>G
  hgvsp: ENSP00000438938.1:p.Phe384Leu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1152T>G
  hgvsp: ENSP00000385446.1:p.Phe384Leu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-460T>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-460T>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-460T>G
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5002
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe384Leu
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

2-38523718-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523718
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523718
    reference: chr 2
allele count: 1
allele frequency: 8.784567272216171e-6
allele num: 113836
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1149G>C
  hgvsp: ENST00000546051.1:c.1149G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-463G>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1608G>C
  hgvsp: ENST00000332337.4:c.1608G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1647G>C
  hgvsp: ENST00000419554.2:c.1647G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-463G>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-463G>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1149G>C
  hgvsp: ENST00000406122.1:c.1149G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-463G>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-463G>C
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu383Leu
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

2-38523721-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523721
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523721
    reference: chr 2
allele count: 1
allele frequency: 8.834702712253733e-6
allele num: 113190
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1605A>G
  hgvsp: ENST00000332337.4:c.1605A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1644A>G
  hgvsp: ENST00000419554.2:c.1644A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-466A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1146A>G
  hgvsp: ENST00000406122.1:c.1146A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-466A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1146A>G
  hgvsp: ENST00000546051.1:c.1146A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-466A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-466A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-466A>G
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6083
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys382Lys
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

2-38523736-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523736
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523736
    reference: chr 2
allele count: 1
allele frequency: 9.391611412686188e-6
allele num: 106478
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-481T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1135-4T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1594-4T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-4T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-481T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-481T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1135-4T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-481T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-481T>C
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1135-4T>C
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

2-38523741-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523741
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523741
    reference: chr 2
allele count: 2
allele frequency: 1.959938849907883e-5
allele num: 102044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1594-9A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1135-9A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-486A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-486A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-486A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-486A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-9A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-486A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1135-9A>T
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

2-38523741-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523741
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523741
    reference: chr 2
allele count: 2
allele frequency: 1.959938849907883e-5
allele num: 102044
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-486A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-486A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-486A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-486A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-486A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1594-9A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-9A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1135-9A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1135-9A>G
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27974
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2693
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16028
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

2-38523750-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523750
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523750
    reference: chr 2
allele count: 2
allele frequency: 2.058290795323563e-5
allele num: 97168
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-495A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1594-18A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-495A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-495A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-495A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-18A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1135-18A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1135-18A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-495A>G
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28023
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

2-38523759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523759
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523759
    reference: chr 2
allele count: 1
allele frequency: 1.132246376811594e-5
allele num: 88320
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-504C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1135-27C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-504C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-27C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1135-27C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-504C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1594-27C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-504C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-504C>T
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

2-38523759-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523759
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523759
    reference: chr 2
allele count: 1
allele frequency: 1.132246376811594e-5
allele num: 88320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-504C>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1594-27C>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-27C>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-504C>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1135-27C>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-504C>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1135-27C>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-504C>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-504C>G
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16785
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27002
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

2-38523768-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523768
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523768
    reference: chr 2
allele count: 3
allele frequency: 3.775389494349501e-5
allele num: 79462
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-513T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-513T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-513T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-513T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-36T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1135-36T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-513T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1594-36T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1135-36T>C
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16217
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14339
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

2-38523777-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523777
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523777
    reference: chr 2
allele count: 2
allele frequency: 2.90883704694863e-5
allele num: 68756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1135-45G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-522G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-522G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-522G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1594-45G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-45G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1135-45G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-522G>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-522G>A
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7801
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16274
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4126
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10279
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

2-38523778-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523778
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523778
    reference: chr 2
allele count: 4
allele frequency: 6.047228857376107e-5
allele num: 66146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1135-46C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-523C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-523C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-523C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1594-46C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-523C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-523C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1135-46C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-46C>T
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15971
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22324
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33455
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

2-38523779-A-AAGCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523779
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523783
    reference: chr 2
allele count: 1
allele frequency: 1.501411326647048e-5
allele num: 66604
alternate allele: AAGCT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-528_*1238-525dupAGCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1134+45_1134+48dupAGCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1593+45_1593+48dupAGCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-528_1633-525dupAGCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-528_1120-525dupAGCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-51_1633-48dupAGCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1134+45_1134+48dupAGCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-528_1120-525dupAGCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-528_1579-525dupAGCT
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15865
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9833
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

2-38523783-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523783
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523781
    reference: chr 2
allele count: 3
allele frequency: 5.03389489227465e-5
allele num: 59596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1134+43_1134+44delTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-530_1120-529delTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-53_1633-52delTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1134+43_1134+44delTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-530_1633-529delTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-530_1120-529delTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1593+43_1593+44delTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-530_1579-529delTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-530_*1238-529delTT
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14568
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7164
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: TAA
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

2-38523784-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523784
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523784
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 59712
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-52T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-529T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-529T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-529T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1134+44T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1593+44T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-529T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1134+44T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-529T>C
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23553
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6758
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32837
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

2-38523789-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523789
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523788
    reference: chr 2
allele count: 1
allele frequency: 1.794043774668102e-5
allele num: 55740
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-535delA
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-535delA
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1593+38delA
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-535delA
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1134+38delA
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1134+38delA
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-535delA
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-58delA
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-535delA
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8763
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31944
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: GT
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

2-38523801-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523801
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523801
    reference: chr 2
allele count: 1
allele frequency: 2.17145835142882e-5
allele num: 46052
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-546T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1134+27T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-546T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1134+27T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-546T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-546T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1593+27T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-69T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-546T>A
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22872
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10290
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13851
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27593
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6494
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

2-38523820-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523820
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523820
    reference: chr 2
allele count: 2
allele frequency: 5.892751915144372e-5
allele num: 33940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-88A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-565A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1134+8A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-565A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-565A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1134+8A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1593+8A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-565A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-565A>G
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17058
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23999
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24871
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1134+8A>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

2-38523851-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523851
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523851
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 22560
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1579-9T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-596T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-119T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1120-9T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1120-9T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-596T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-596T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-596T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-596T>C
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5974
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2571
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30974
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

2-38523854-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523854
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523855
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 21854
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-600dupT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-600dupT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1120-13dupT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1579-13dupT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-123dupT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-600dupT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-600dupT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1120-13dupT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-600dupT
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

2-38523868-AAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523868
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523865
    reference: chr 2
allele count: 3
allele frequency: 1.467279663503864e-4
allele num: 20446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-616_1120-614delCTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-139_1633-137delCTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-616_1579-614delCTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1120-29_1120-27delCTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-616_1120-614delCTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1120-29_1120-27delCTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-616_1633-614delCTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1579-29_1579-27delCTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-616_*1238-614delCTT
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29533
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: AAAG
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

2-38523882-AAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523882
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523880
    reference: chr 2
allele count: 1
allele frequency: 5.040322580645161e-5
allele num: 19840
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-629_1633-628delCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-629_1579-628delCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1120-42_1120-41delCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-629_*1238-628delCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-152_1633-151delCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-629_1120-628delCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-629_1120-628delCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1579-42_1579-41delCT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1120-42_1120-41delCT
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27594
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8606
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: AAG
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

2-38523887-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523887
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523887
    reference: chr 2
allele count: 1
allele frequency: 5.074596569572719e-5
allele num: 19706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-632A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1579-45A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-632A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-632A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1120-45A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1120-45A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-155A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-632A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-632A>T
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27393
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17617
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9982
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

2-38523889-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523889
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523889
    reference: chr 2
allele count: 1
allele frequency: 5.114566284779051e-5
allele num: 19552
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-634C>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-634C>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-634C>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-157C>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1120-47C>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-634C>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-634C>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1120-47C>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1579-47C>A
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

2-38523892-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38523892
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38523892
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 19504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1579-50C>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1120-50C>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1633-160C>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1579-637C>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1238-637C>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1120-637C>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1633-637C>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1120-637C>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1120-50C>A
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15690
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

2-38525235-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38525235
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38525235
    reference: chr 2
allele count: 1
allele frequency: 9.039629736765981e-6
allele num: 110624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119787
  ensembl transcript: ENST00000477642
  gene symbol: ATL2
  hgvsc: ENST00000477642.1:n.602C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1632+51C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1578+51C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1119+51C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1578+51C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1237+51C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1119+51C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1632+51C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1119+51C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1119+51C>T
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11237
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5701
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

2-38525242-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38525242
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38525242
    reference: chr 2
allele count: 3
allele frequency: 2.707141439116389e-5
allele num: 110818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1578+44C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1119+44C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1119+44C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1578+44C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1119+44C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1632+44C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119787
  ensembl transcript: ENST00000477642
  gene symbol: ATL2
  hgvsc: ENST00000477642.1:n.595C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1632+44C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1119+44C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1237+44C>T
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11687
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3840
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8947
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12485
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

2-38525247-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38525247
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38525247
    reference: chr 2
allele count: 1
allele frequency: 9.008035167369294e-6
allele num: 111012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1578+39A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1237+39A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119787
  ensembl transcript: ENST00000477642
  gene symbol: ATL2
  hgvsc: ENST00000477642.1:n.590A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1119+39A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1632+39A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1578+39A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1119+39A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1632+39A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1119+39A>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1119+39A>T
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11980
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

2-38525247-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38525247
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38525247
    reference: chr 2
allele count: 1
allele frequency: 9.008035167369294e-6
allele num: 111012
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1632+39A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1119+39A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1578+39A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119787
  ensembl transcript: ENST00000477642
  gene symbol: ATL2
  hgvsc: ENST00000477642.1:n.590A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1119+39A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1119+39A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1632+39A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1578+39A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1237+39A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1119+39A>G
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11980
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4701
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum

2-38525250-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38525250
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38525250
    reference: chr 2
allele count: 477
allele frequency: 4.292811116310882e-3
allele num: 111116
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1578+36C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1237+36C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1578+36C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1632+36C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1119+36C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1119+36C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1119+36C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1119+36C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1632+36C>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119787
  ensembl transcript: ENST00000477642
  gene symbol: ATL2
  hgvsc: ENST00000477642.1:n.587C>T
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9280
  bin: 3.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 12174
  bin: 2.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 4.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 1.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 15119
  bin: 2.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 4.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 3.75e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 9
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

2-38525251-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38525251
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38525251
    reference: chr 2
allele count: 1
allele frequency: 8.990865280874631e-6
allele num: 111224
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1578+35T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1632+35T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1119+35T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1119+35T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119787
  ensembl transcript: ENST00000477642
  gene symbol: ATL2
  hgvsc: ENST00000477642.1:n.586T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1578+35T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1119+35T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1632+35T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1119+35T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1237+35T>C
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12198
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14645
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/2-38525265-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38525265
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38525265
    reference: chr 2
allele count: 1
allele frequency: 8.890469416785207e-6
allele num: 112480
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1578+21T>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1119+21T>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1119+21T>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1119+21T>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1632+21T>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1632+21T>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119787
  ensembl transcript: ENST00000477642
  gene symbol: ATL2
  hgvsc: ENST00000477642.1:n.572T>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1578+21T>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1237+21T>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1119+21T>G
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12671
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/2-38525267-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38525267
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38525267
    reference: chr 2
allele count: 1
allele frequency: 8.883045818750333e-6
allele num: 112574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1119+19G>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1578+19G>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1578+19G>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119787
  ensembl transcript: ENST00000477642
  gene symbol: ATL2
  hgvsc: ENST00000477642.1:n.570G>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1632+19G>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1119+19G>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1237+19G>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1119+19G>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1632+19G>T
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1119+19G>T
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12672
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-38525268-CAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38525268
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38525266
    reference: chr 2
allele count: 1
allele frequency: 8.866820358219543e-6
allele num: 112780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1119+16_1119+17delTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1632+16_1632+17delTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1237+16_*1237+17delTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119787
  ensembl transcript: ENST00000477642
  gene symbol: ATL2
  hgvsc: ENST00000477642.1:n.567_568delTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1578+16_1578+17delTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1119+16_1119+17delTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1119+16_1119+17delTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1578+16_1578+17delTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1632+16_1632+17delTT
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1119+16_1119+17delTT
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3056
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: CAA
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

2-38525271-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38525271
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38525271
    reference: chr 2
allele count: 3
allele frequency: 2.64765065132206e-5
allele num: 113308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1578+15T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1119+15T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1578+15T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1119+15T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1119+15T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119787
  ensembl transcript: ENST00000477642
  gene symbol: ATL2
  hgvsc: ENST00000477642.1:n.566T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1119+15T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1632+15T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1237+15T>A
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1632+15T>A
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17546
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

2-38525275-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38525275
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38525275
    reference: chr 2
allele count: 7
allele frequency: 6.144986568815071e-5
allele num: 113914
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119787
  ensembl transcript: ENST00000477642
  gene symbol: ATL2
  hgvsc: ENST00000477642.1:n.562A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1578+11A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1578+11A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1237+11A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1632+11A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1119+11A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1119+11A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1119+11A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1632+11A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1119+11A>G
  variant of: http://identifiers.org/hgnc/24047
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17596
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13083
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

2-38525278-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38525278
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38525278
    reference: chr 2
allele count: 1
allele frequency: 8.737134569346637e-6
allele num: 114454
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1237+8T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1119+8T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1578+8T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1632+8T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1632+8T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1119+8T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1578+8T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119787
  ensembl transcript: ENST00000477642
  gene symbol: ATL2
  hgvsc: ENST00000477642.1:n.559T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1119+8T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1119+8T>C
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 8.75e1
  variant carriers: 0
hgvs: c.1632+8T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP

2-38525289-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38525289
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38525289
    reference: chr 2
allele count: 1
allele frequency: 8.531112968997936e-6
allele num: 117218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1629A>G
  hgvsp: ENST00000419554.2:c.1629A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1116A>G
  hgvsp: ENST00000546051.1:c.1116A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119787
  ensembl transcript: ENST00000477642
  gene symbol: ATL2
  hgvsc: ENST00000477642.1:n.548A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1575A>G
  hgvsp: ENST00000332337.4:c.1575A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1629A>G
  hgvsp: ENST00000378954.4:c.1629A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1234A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1116A>G
  hgvsp: ENST00000406122.1:c.1116A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1116A>G
  hgvsp: ENST00000402054.1:c.1116A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1116A>G
  hgvsp: ENST00000539122.1:c.1116A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1575A>G
  hgvsp: ENST00000452935.2:c.1575A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19629
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu543Glu
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-38525294-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38525294
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38525294
    reference: chr 2
allele count: 1
allele frequency: 8.449228585430151e-6
allele num: 118354
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1570T>C
  hgvsp: ENSP00000333393.4:p.Trp524Arg
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1111T>C
  hgvsp: ENSP00000438938.1:p.Trp371Arg
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1111T>C
  hgvsp: ENSP00000446192.1:p.Trp371Arg
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1111T>C
  hgvsp: ENSP00000384062.1:p.Trp371Arg
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1570T>C
  hgvsp: ENSP00000390743.2:p.Trp524Arg
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1111T>C
  hgvsp: ENSP00000385446.1:p.Trp371Arg
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119787
  ensembl transcript: ENST00000477642
  gene symbol: ATL2
  hgvsc: ENST00000477642.1:n.543T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1229T>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1624T>C
  hgvsp: ENSP00000415336.2:p.Trp542Arg
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1624T>C
  hgvsp: ENSP00000368237.4:p.Trp542Arg
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Trp542Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

2-38525297-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38525297
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38525297
    reference: chr 2
allele count: 1
allele frequency: 8.417366710998132e-6
allele num: 118802
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119787
  ensembl transcript: ENST00000477642
  gene symbol: ATL2
  hgvsc: ENST00000477642.1:n.540C>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1226C>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1567C>G
  hgvsp: ENSP00000333393.4:p.Leu523Val
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1108C>G
  hgvsp: ENSP00000385446.1:p.Leu370Val
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1108C>G
  hgvsp: ENSP00000438938.1:p.Leu370Val
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1567C>G
  hgvsp: ENSP00000390743.2:p.Leu523Val
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1621C>G
  hgvsp: ENSP00000415336.2:p.Leu541Val
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1108C>G
  hgvsp: ENSP00000446192.1:p.Leu370Val
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1108C>G
  hgvsp: ENSP00000384062.1:p.Leu370Val
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1621C>G
  hgvsp: ENSP00000368237.4:p.Leu541Val
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10097
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4370
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu541Val
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

2-38525312-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38525312
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38525312
    reference: chr 2
allele count: 1
allele frequency: 8.305509875251242e-6
allele num: 120402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1093C>G
  hgvsp: ENSP00000438938.1:p.Gln365Glu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1552C>G
  hgvsp: ENSP00000333393.4:p.Gln518Glu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1552C>G
  hgvsp: ENSP00000390743.2:p.Gln518Glu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1093C>G
  hgvsp: ENSP00000385446.1:p.Gln365Glu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1093C>G
  hgvsp: ENSP00000446192.1:p.Gln365Glu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119787
  ensembl transcript: ENST00000477642
  gene symbol: ATL2
  hgvsc: ENST00000477642.1:n.525C>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1093C>G
  hgvsp: ENSP00000384062.1:p.Gln365Glu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1606C>G
  hgvsp: ENSP00000415336.2:p.Gln536Glu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1211C>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1606C>G
  hgvsp: ENSP00000368237.4:p.Gln536Glu
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12701
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln536Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

2-38525314-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38525314
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38525314
    reference: chr 2
allele count: 1
allele frequency: 8.299443937256203e-6
allele num: 120490
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1091A>G
  hgvsp: ENSP00000438938.1:p.Asp364Gly
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1550A>G
  hgvsp: ENSP00000333393.4:p.Asp517Gly
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1091A>G
  hgvsp: ENSP00000384062.1:p.Asp364Gly
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119787
  ensembl transcript: ENST00000477642
  gene symbol: ATL2
  hgvsc: ENST00000477642.1:n.523A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1091A>G
  hgvsp: ENSP00000385446.1:p.Asp364Gly
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1604A>G
  hgvsp: ENSP00000368237.4:p.Asp535Gly
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1550A>G
  hgvsp: ENSP00000390743.2:p.Asp517Gly
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1209A>G
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1091A>G
  hgvsp: ENSP00000446192.1:p.Asp364Gly
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1604A>G
  hgvsp: ENSP00000415336.2:p.Asp535Gly
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp535Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

2-38525321-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38525321
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 38525321
    reference: chr 2
allele count: 1
allele frequency: 8.277460475126231e-6
allele num: 120810
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000385446
  ensembl transcript: ENST00000406122
  gene symbol: ATL2
  hgvsc: ENST00000406122.1:c.1084G>C
  hgvsp: ENSP00000385446.1:p.Val362Leu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000368237
  ensembl transcript: ENST00000378954
  gene symbol: ATL2
  hgvsc: ENST00000378954.4:c.1597G>C
  hgvsp: ENSP00000368237.4:p.Val533Leu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000446192
  ensembl transcript: ENST00000539122
  gene symbol: ATL2
  hgvsc: ENST00000539122.1:c.1084G>C
  hgvsp: ENSP00000446192.1:p.Val362Leu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000390743
  ensembl transcript: ENST00000452935
  gene symbol: ATL2
  hgvsc: ENST00000452935.2:c.1543G>C
  hgvsp: ENSP00000390743.2:p.Val515Leu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000333393
  ensembl transcript: ENST00000332337
  gene symbol: ATL2
  hgvsc: ENST00000332337.4:c.1543G>C
  hgvsp: ENSP00000333393.4:p.Val515Leu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000438938
  ensembl transcript: ENST00000546051
  gene symbol: ATL2
  hgvsc: ENST00000546051.1:c.1084G>C
  hgvsp: ENSP00000438938.1:p.Val362Leu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000415336
  ensembl transcript: ENST00000419554
  gene symbol: ATL2
  hgvsc: ENST00000419554.2:c.1597G>C
  hgvsp: ENSP00000415336.2:p.Val533Leu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000383944
  ensembl transcript: ENST00000405384
  gene symbol: ATL2
  hgvsc: ENST00000405384.2:c.*1202G>C
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000119787
  ensembl protein: ENSP00000384062
  ensembl transcript: ENST00000402054
  gene symbol: ATL2
  hgvsc: ENST00000402054.1:c.1084G>C
  hgvsp: ENSP00000384062.1:p.Val362Leu
  variant of: http://identifiers.org/hgnc/24047
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000119787
  ensembl transcript: ENST00000477642
  gene symbol: ATL2
  hgvsc: ENST00000477642.1:n.516G>C
  variant of: http://identifiers.org/hgnc/24047
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val533Leu
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 372
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2367
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 158
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.01002004008016e-4
allele num: 1996
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.434e0

DP
type: SiteQuality
SIO_000300: 4.2865e5

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.805e0

MQ
type: SiteQuality
SIO_000300: 6.118e1

QD
type: SiteQuality
SIO_000300: 1.436e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.72e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 155
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.226993865030675e-4
allele num: 8150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.106e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.81e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 4.28422e5

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.83e-1

QD
type: SiteQuality
SIO_000300: 1.159e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.198e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3434
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8873
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5920
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3684
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1607
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8816
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4644
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.834187373102581e-5
allele num: 20686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.89e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

QD
type: SiteQuality
SIO_000300: 1.555e1

DP
type: SiteQuality
SIO_000300: 6.63671e5

GenotypeQuality
all individuals: 641
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3685
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8906
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8811
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 699
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20676
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2864
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.9e0

DP
type: SiteQuality
SIO_000300: 6.64189e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

MQRankSum
type: SiteQuality
SIO_000300: -1.221e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.098e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

GenotypeQuality
all individuals: 8997
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7443
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3673
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5825
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3407
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15624
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1607
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.496402877697842e-4
allele num: 2224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2870
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.808e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

QD
type: SiteQuality
SIO_000300: 1.646e1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.89e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.67384e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e0

GenotypeQuality
all individuals: 391
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7128
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16018
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3677
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5005
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 476
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2866
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.954652071931196e-4
allele num: 5116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20686
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.492e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.93e-1

FS
type: SiteQuality
SIO_000300: 1.0887e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.89e-2

QD
type: SiteQuality
SIO_000300: 2.273e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.238e0

MQRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 6.68921e5

GenotypeQuality
all individuals: 1630
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3702
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5424
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5499
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3446
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.925483777799172e-4
allele num: 20774
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9452
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.416e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

FS
type: SiteQuality
SIO_000300: 4.236e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.84e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

QD
type: SiteQuality
SIO_000300: 1.153e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.76682e5

VQSLOD
type: SiteQuality
SIO_000300: 8.88e-1

GenotypeQuality
all individuals: 8969
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3481
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19478
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4688
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 8.25e1
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GenotypeQuality
all individuals: 3735
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 544
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.92975685063682e-4
allele num: 5182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20974
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.06e1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.79e-1

DP
type: SiteQuality
SIO_000300: 6.84159e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.03e-1

QD
type: SiteQuality
SIO_000300: 1.978e1

FS
type: SiteQuality
SIO_000300: 1.0793e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.73e-1

GenotypeQuality
all individuals: 484
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3730
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8607
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3774
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
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variant carriers: 0

GenotypeQuality
all individuals: 4181
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 2.5e0
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GenotypeQuality
all individuals: 1087
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3515
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5997
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2916
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21242
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.95818e5

VQSLOD
type: SiteQuality
SIO_000300: -2.803e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.74e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.495e0

QD
type: SiteQuality
SIO_000300: 1.37e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2248
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2976
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 21578
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.045806316670153e-4
allele num: 9562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2388
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.10302e5

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.039e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.55e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.679e1

QD
type: SiteQuality
SIO_000300: 1.667e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3280
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.819324430479184e-5
allele num: 10184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26258
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

DP
type: SiteQuality
SIO_000300: 8.27428e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.419e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.22e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.69e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 346
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 6.020469596628537e-4
allele num: 3322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.113e-1

DP
type: SiteQuality
SIO_000300: 8.33729e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

QD
type: SiteQuality
SIO_000300: 1.739e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.177e0

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.79e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1110
bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3970
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3988
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 4.693073024216257e-4
allele num: 10654
num of homozygotes: 1

MQ
type: SiteQuality
SIO_000300: 6.109e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

QD
type: SiteQuality
SIO_000300: 2.106e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.85e-1

DP
type: SiteQuality
SIO_000300: 8.91172e5

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

FS
type: SiteQuality
SIO_000300: 1.665e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
all individuals: 40979
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.204610951008646e-5
allele num: 13880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 2.189061986938597e-4
allele num: 54818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9638
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.114e0

FS
type: SiteQuality
SIO_000300: 1.0863e1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

QD
type: SiteQuality
SIO_000300: 4.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.163e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.06e0

DP
type: SiteQuality
SIO_000300: 1.258316e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8060
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.67305088024763e-5
allele num: 10338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

QD
type: SiteQuality
SIO_000300: 1.138e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.554e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.315552e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.1e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.575486586007364e-4
allele num: 15208
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.833852924995415e-4
allele num: 10906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63078
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10040
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MQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.36987e6

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.02e-2

MQ
type: SiteQuality
SIO_000300: 5.979e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.74e-1

FS
type: SiteQuality
SIO_000300: 2.727e0

QD
type: SiteQuality
SIO_000300: 1.482e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64408
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.447453255963895e-5
allele num: 15510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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MQRankSum
type: SiteQuality
SIO_000300: -6.37e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.39176e6

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.05e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 13

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 411
bin: 5.25e1
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GenotypeQuality
all individuals: 48453
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64430
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.276762914947947e-3
allele num: 10182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

DP
type: SiteQuality
SIO_000300: 1.392149e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.28e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.101640767966254e-5
allele num: 64482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.394677e6

VQSLOD
type: SiteQuality
SIO_000300: -3.822e0

QD
type: SiteQuality
SIO_000300: 2.17e0

FS
type: SiteQuality
SIO_000300: 1.141e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

MQRankSum
type: SiteQuality
SIO_000300: -3.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.72e-1

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.550387596899225e-5
allele num: 64500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11118
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.55e0

DP
type: SiteQuality
SIO_000300: 1.395864e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.303e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 2.746e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5542913985514e-5
allele num: 64338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

DP
type: SiteQuality
SIO_000300: 1.391376e6

FS
type: SiteQuality
SIO_000300: 2.524e0

QD
type: SiteQuality
SIO_000300: 1.051e1

MQRankSum
type: SiteQuality
SIO_000300: -2.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.99e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55671098103926e-5
allele num: 64238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

QD
type: SiteQuality
SIO_000300: 3.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

FS
type: SiteQuality
SIO_000300: 2.018e0

DP
type: SiteQuality
SIO_000300: 1.391315e6

MQ
type: SiteQuality
SIO_000300: 5.843e1

MQRankSum
type: SiteQuality
SIO_000300: 5.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.129e0

VQSLOD
type: SiteQuality
SIO_000300: -1.39e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 432
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.84251968503937e-5
allele num: 10160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.947040498442368e-4
allele num: 15408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.784766768387619e-5
allele num: 64228
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-2

VQSLOD
type: SiteQuality
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MQRankSum
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 1.390752e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.388874e6

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 8.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.496881496881497e-5
allele num: 15392
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East Asian
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allele count: 6
allele frequency: 7.088846880907373e-4
allele num: 8464
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559965056782728e-5
allele num: 64104
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.05961224859576e-5
allele num: 11038
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.108e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 349
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565092183929633e-5
allele num: 63894
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

DP
type: SiteQuality
SIO_000300: 1.385782e6

VQSLOD
type: SiteQuality
SIO_000300: 4.32e-1

FS
type: SiteQuality
SIO_000300: 2.182e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63392
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.19019281123542e-4
allele num: 8402
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQ
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ClippingRankSum
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SIO_000300: -1.322e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
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DP
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SIO_000300: 1.375191e6

FS
type: SiteQuality
SIO_000300: 1.2186e1

MQRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10878
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62744
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15148
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.196744853997128e-4
allele num: 8356
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.943e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.228e0

ClippingRankSum
type: SiteQuality
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DP
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FS
type: SiteQuality
SIO_000300: 2.159e0

VQSLOD
type: SiteQuality
SIO_000300: 2.93e-1

QD
type: SiteQuality
SIO_000300: 1.227e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.602615468444501e-5
allele num: 62398
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e0

MQRankSum
type: SiteQuality
SIO_000300: -1.895e0

VQSLOD
type: SiteQuality
SIO_000300: -1.481e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.206e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.213e0

FS
type: SiteQuality
SIO_000300: 4.669e0

DP
type: SiteQuality
SIO_000300: 1.355384e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.577e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.007455168245013e-4
allele num: 9926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15040
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.392e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.784e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

FS
type: SiteQuality
SIO_000300: 3.442e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-1

DP
type: SiteQuality
SIO_000300: 1.345968e6

MQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.728011059270779e-5
allele num: 57870
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: -7.587e-1

QD
type: SiteQuality
SIO_000300: 1.28e1

FS
type: SiteQuality
SIO_000300: 1.527e0

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 5.564e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9388
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.626078758430633e-5
allele num: 55156
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.200887e6

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.944e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.626078758430633e-5
allele num: 55156
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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DP
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MQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.82189948404357e-5
allele num: 52330
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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FS
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MQ
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7434
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.553760099440646e-4
allele num: 6436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47316
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.073e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.796e0

MQRankSum
type: SiteQuality
SIO_000300: 8.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

VQSLOD
type: SiteQuality
SIO_000300: 6.889999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.037105e6

FS
type: SiteQuality
SIO_000300: 3.069e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.1134499957731e-5
allele num: 47316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5190
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12830
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.53e-1

FS
type: SiteQuality
SIO_000300: 3.069e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 1.073e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.796e0

VQSLOD
type: SiteQuality
SIO_000300: 6.889999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.037105e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 42252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 5.326704545454545e-4
allele num: 5632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.40799e5

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.0e-1

QD
type: SiteQuality
SIO_000300: 9.57e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.181500872600349e-4
allele num: 4584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.769929643787048e-5
allele num: 36102
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

DP
type: SiteQuality
SIO_000300: 8.56512e5

QD
type: SiteQuality
SIO_000300: 1.255e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.446e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

VQSLOD
type: SiteQuality
SIO_000300: -3.971e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.900000000000001e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.89452356142179e-5
allele num: 34548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4194
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.303086135421465e-4
allele num: 4342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.801152737752161e-4
allele num: 11104
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.39482e5

FS
type: SiteQuality
SIO_000300: 3.587e0

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.15e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.294e0

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

QD
type: SiteQuality
SIO_000300: 1.408e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.875380987980907e-5
allele num: 34778
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.25e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.07e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.268e0

MQ
type: SiteQuality
SIO_000300: 4.805e1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

DP
type: SiteQuality
SIO_000300: 8.36511e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4064
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 9.773260359655981e-5
allele num: 30696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1024e1

MQRankSum
type: SiteQuality
SIO_000300: 7.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.51e-2

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 6.25e-1

DP
type: SiteQuality
SIO_000300: 7.90143e5

QD
type: SiteQuality
SIO_000300: 1.582e1

MQ
type: SiteQuality
SIO_000300: 5.902e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4084
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 30752
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3888
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South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.523856508562971e-5
allele num: 28378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3382
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.52e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

DP
type: SiteQuality
SIO_000300: 7.63846e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

MQ
type: SiteQuality
SIO_000300: 6.057e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.226e0

QD
type: SiteQuality
SIO_000300: 1.32e1

GenotypeQuality
all individuals: 337
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14563
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.028594939312899e-4
allele num: 9722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4814
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.26e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

DP
type: SiteQuality
SIO_000300: 6.92165e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.27e-2

QD
type: SiteQuality
SIO_000300: 5.82e0

GenotypeQuality
all individuals: 659
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5043
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.331518298087882e-5
allele num: 15794
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.12739571589628e-4
allele num: 8870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1598
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.77e-2

MQ
type: SiteQuality
SIO_000300: 5.94e1

FS
type: SiteQuality
SIO_000300: 9.54e-1

DP
type: SiteQuality
SIO_000300: 5.77249e5

BaseQRankSum
type: SiteQuality
SIO_000300: 4.98e0

MQRankSum
type: SiteQuality
SIO_000300: -6.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.526e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.37e-1

QD
type: SiteQuality
SIO_000300: 1.121e1

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1848
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.09e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.876e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

QD
type: SiteQuality
SIO_000300: 8.130000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 4.19394e5

GenotypeQuality
all individuals: 929
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 325
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.54e0

DP
type: SiteQuality
SIO_000300: 4.06862e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.33e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.902e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 1.061e1

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 1021
bin: 1.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 9.75e1
variant carriers: 4

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 3.80517503805175e-4
allele num: 7884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1686
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

DP
type: SiteQuality
SIO_000300: 3.68417e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

MQ
type: SiteQuality
SIO_000300: 5.604e1

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.76e-2

QD
type: SiteQuality
SIO_000300: 1.798e1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 1.343e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 1107
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
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variant carriers: 0

GenotypeQuality
all individuals: 579
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variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.335470085470086e-4
allele num: 7488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1656
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 7.56e0

FS
type: SiteQuality
SIO_000300: 2.817e0

DP
type: SiteQuality
SIO_000300: 3.47553e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.06e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 4.085e1

GenotypeQuality
all individuals: 640
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 324
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.352447930754666e-4
allele num: 7394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.067e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 4.405e1

QD
type: SiteQuality
SIO_000300: 5.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

DP
type: SiteQuality
SIO_000300: 3.46055e5

MQRankSum
type: SiteQuality
SIO_000300: -1.026e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.367989056087551e-4
allele num: 7310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.09e0

VQSLOD
type: SiteQuality
SIO_000300: -1.623e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 4.58e0

DP
type: SiteQuality
SIO_000300: 3.45959e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.58e-2

MQ
type: SiteQuality
SIO_000300: 4.996e1

GenotypeQuality
all individuals: 458
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 5.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 11908
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
all individuals: 316
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1426
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.85e1

DP
type: SiteQuality
SIO_000300: 3.46525e5

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.77e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

QD
type: SiteQuality
SIO_000300: 7.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 2150
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3040
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3086
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3883
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567643831321524e-5
allele num: 63790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 3.188e0

DP
type: SiteQuality
SIO_000300: 1.732045e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.79e-1

QD
type: SiteQuality
SIO_000300: 1.274e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.949e0

GenotypeQuality
all individuals: 5930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.9147332936744e-5
allele num: 10086
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.781173164734808e-5
allele num: 11388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565827383189277e-5
allele num: 63864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.493e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.237e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-1

FS
type: SiteQuality
SIO_000300: 4.314e0

VQSLOD
type: SiteQuality
SIO_000300: 7.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.69e-1

DP
type: SiteQuality
SIO_000300: 1.756114e6

GenotypeQuality
all individuals: 4053
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12500
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563232765358762e-5
allele num: 63970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.261e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.036e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

VQSLOD
type: SiteQuality
SIO_000300: 9.92e-1

DP
type: SiteQuality
SIO_000300: 1.773713e6

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

MQ
type: SiteQuality
SIO_000300: 5.936e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 1.301e1

GenotypeQuality
all individuals: 111
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13858
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3335
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2971
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1415
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
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variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3145
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
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variant carriers: 0

GenotypeQuality
all individuals: 12500
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6136
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563232765358762e-5
allele num: 63970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.036e0

QD
type: SiteQuality
SIO_000300: 1.301e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

VQSLOD
type: SiteQuality
SIO_000300: 9.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

MQ
type: SiteQuality
SIO_000300: 5.936e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

FS
type: SiteQuality
SIO_000300: 1.261e0

DP
type: SiteQuality
SIO_000300: 1.773713e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 556
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4747
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 229
bin: 5.75e1
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GenotypeQuality
all individuals: 4053
bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 7.5e0
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 462

GenotypeQuality
all individuals: 6165
bin: 6.75e1
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GenotypeQuality
all individuals: 3154
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

African
type: Population
allele count: 463
allele frequency: 4.757501027538019e-2
allele num: 9732
num of homozygotes: 9

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.124804699706268e-5
allele num: 64004
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.645738337425465e-4
allele num: 11404
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.240694789081886e-3
allele num: 806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.82e-2

DP
type: SiteQuality
SIO_000300: 1.790621e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.679e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

QD
type: SiteQuality
SIO_000300: 1.456e1

VQSLOD
type: SiteQuality
SIO_000300: 6.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 356
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3561
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GenotypeQuality
all individuals: 86
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 307
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 894
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4134
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4821
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.026272577996716e-4
allele num: 9744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
type: SiteQuality
SIO_000300: 2.732e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e0

VQSLOD
type: SiteQuality
SIO_000300: -3.603e0

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.793148e6

GenotypeQuality
all individuals: 3050
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3360
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GenotypeQuality
all individuals: 5005
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64490
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.174536058256989e-4
allele num: 8514
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.736e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.833969e6

GenotypeQuality
all individuals: 4293
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.5e0
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GenotypeQuality
all individuals: 510
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GenotypeQuality
all individuals: 108
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GenotypeQuality
all individuals: 393
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GenotypeQuality
all individuals: 318
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GenotypeQuality
all individuals: 3361
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3052
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variant carriers: 0

GenotypeQuality
all individuals: 124
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GenotypeQuality
all individuals: 96
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GenotypeQuality
all individuals: 17143
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64526
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.016260162601626e-4
allele num: 9840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e-1

FS
type: SiteQuality
SIO_000300: 6.860000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.837885e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

QD
type: SiteQuality
SIO_000300: 1.123e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.515e0

GenotypeQuality
all individuals: 131
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.015640869388584e-4
allele num: 9846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10966
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.035e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.356e0

DP
type: SiteQuality
SIO_000300: 1.840867e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.347e1

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.385e0

FS
type: SiteQuality
SIO_000300: 2.541e0

MQRankSum
type: SiteQuality
SIO_000300: -3.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.42e-1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.633490872022982e-5
allele num: 64746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.21e-1

QD
type: SiteQuality
SIO_000300: 1.16e1

VQSLOD
type: SiteQuality
SIO_000300: 2.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

DP
type: SiteQuality
SIO_000300: 1.846323e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.852e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

FS
type: SiteQuality
SIO_000300: 6.563e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540120129370091e-5
allele num: 64930
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.439972480220158e-4
allele num: 11628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.74246384387524e-4
allele num: 11478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

FS
type: SiteQuality
SIO_000300: 5.033e0

VQSLOD
type: SiteQuality
SIO_000300: 7.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.852801e6

QD
type: SiteQuality
SIO_000300: 1.402e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.715356458079135e-5
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-2

QD
type: SiteQuality
SIO_000300: 1.275e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 9.72e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

DP
type: SiteQuality
SIO_000300: 1.858768e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52114390021296e-5
allele num: 65740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.973e0

DP
type: SiteQuality
SIO_000300: 1.884292e6

MQRankSum
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SIO_000300: -6.879999999999999e-1

InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: -4.297e-1

ClippingRankSum
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SIO_000300: 6.77e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.305e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515381118351265e-5
allele num: 65990
num of homozygotes: 0

Other
type: Population
allele count: 0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -1.565e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
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SIO_000300: -3.849e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512813530604218e-5
allele num: 66102
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.795e1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.74e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.581e0

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.899587e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2220
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4375
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7154
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3494
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.4701e1

DP
type: SiteQuality
SIO_000300: 1.916518e6

QD
type: SiteQuality
SIO_000300: 1.173e1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

VQSLOD
type: SiteQuality
SIO_000300: -2.067e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.241e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.59e-1

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5162
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4373
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7172
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3498
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3081
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12701
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21432
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504890895410083e-5
allele num: 66450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16010
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.475e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e-1

QD
type: SiteQuality
SIO_000300: 1.316e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.82e0

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

DP
type: SiteQuality
SIO_000300: 1.917201e6