1-160322804-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322804
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322804
    reference: chr 1
allele count: 640
allele frequency: 5.350991605631919e-3
allele num: 119604
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.608+23C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.333+23C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.687+23C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.529+23C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.132-146C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1101+23C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.687+23C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1041+23C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1041+23C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.327+23C>G
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 15620
  bin: 2.75e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 6555
  bin: 3.25e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4661
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 9.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13048
  bin: 2.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 3.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 4.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 1.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12458
  bin: 9.75e1
  variant carriers: 621
genotype quality: GenotypeQuality
  all individuals: 21840
  bin: 6.25e1
  variant carriers: 3
num of homozygotes: 11
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

1-160322831-TTTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322831
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322828
    reference: chr 1
allele count: 2
allele frequency: 1.695835029168363e-5
allele num: 117936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.687+56_687+58delGTT
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1041+56_1041+58delGTT
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.687+56_687+58delGTT
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.608+56_608+58delGTT
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1041+56_1041+58delGTT
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1101+56_1101+58delGTT
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.327+56_327+58delGTT
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.132-113_132-111delGTT
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.333+56_333+58delGTT
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.529+56_529+58delGTT
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8950
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2785
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4829
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: TTTG
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-160322901-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322901
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322901
    reference: chr 1
allele count: 2
allele frequency: 1.649103712132456e-5
allele num: 121278
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1102-49C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1042-49C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.688-49C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.334-49C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.688-49C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.609-49C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.328-49C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.132-49C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.530-49C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1042-49C>T
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19978
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3086
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7661
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

1-160322920-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322920
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322920
    reference: chr 1
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.688-30C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.334-30C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1042-30C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.609-30C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.132-30C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.328-30C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.688-30C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1102-30C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.530-30C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1042-30C>G
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3000
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

1-160322925-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322925
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322925
    reference: chr 1
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1042-25T>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.530-25T>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.334-25T>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1042-25T>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.688-25T>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.609-25T>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.132-25T>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.328-25T>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.688-25T>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1102-25T>G
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13333
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

1-160322926-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322926
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322926
    reference: chr 1
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.530-24G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.328-24G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.132-24G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.688-24G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1102-24G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1042-24G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.688-24G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1042-24G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.609-24G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.334-24G>A
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13463
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

1-160322932-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322932
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322932
    reference: chr 1
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1042-18T>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.328-18T>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1102-18T>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1042-18T>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.132-18T>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.530-18T>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.334-18T>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.688-18T>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.609-18T>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.688-18T>G
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5718
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3014
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-160322940-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322940
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322940
    reference: chr 1
allele count: 5
allele frequency: 4.119837843182493e-5
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.609-10C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.132-10C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.688-10C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1042-10C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.530-10C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1042-10C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.334-10C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1102-10C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.328-10C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.688-10C>A
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

1-160322940-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322940
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322940
    reference: chr 1
allele count: 3
allele frequency: 2.471902705909495e-5
allele num: 121364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.334-10C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.609-10C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.328-10C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.530-10C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.688-10C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1102-10C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1042-10C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1042-10C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.132-10C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.688-10C>G
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26271
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP

1-160322941-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322941
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322942
    reference: chr 1
allele count: 14
allele frequency: 1.153611628405214e-4
allele num: 121358
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.688-3dupC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1102-3dupC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.530-3dupC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1042-3dupC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1042-3dupC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.688-3dupC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.132-3dupC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.609-3dupC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.334-3dupC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.328-3dupC
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1102-3dupC
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum

1-160322941-TCCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322941
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322938
    reference: chr 1
allele count: 2
allele frequency: 1.648016612007449e-5
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.530-5_530-3delCCC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.688-5_688-3delCCC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1042-5_1042-3delCCC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.328-5_328-3delCCC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1102-5_1102-3delCCC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.609-5_609-3delCCC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.334-5_334-3delCCC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.132-5_132-3delCCC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.688-5_688-3delCCC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1042-5_1042-3delCCC
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20532
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1102-5_1102-3delCCC
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: TCCC
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

1-160322942-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322942
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322942
    reference: chr 1
allele count: 4
allele frequency: 3.296902560044838e-5
allele num: 121326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.609-8C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1102-8C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1042-8C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.530-8C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.334-8C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.688-8C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.688-8C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.328-8C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1042-8C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.132-8C>G
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13324
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1102-8C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

1-160322942-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322942
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322942
    reference: chr 1
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.530-8C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.688-8C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1102-8C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1042-8C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.334-8C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1042-8C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.132-8C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.688-8C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.609-8C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.328-8C>T
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1102-8C>T
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

1-160322943-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322943
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322943
    reference: chr 1
allele count: 3
allele frequency: 2.471780505891077e-5
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.132-7C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.609-7C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1042-7C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1102-7C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.688-7C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.530-7C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.328-7C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.688-7C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1042-7C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.334-7C>T
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1102-7C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

1-160322946-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322946
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322946
    reference: chr 1
allele count: 3
allele frequency: 2.471536142096851e-5
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.609-4C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1102-4C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.328-4C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.688-4C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.132-4C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1042-4C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1042-4C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.688-4C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.334-4C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.530-4C>G
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3734
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1102-4C>G
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

1-160322946-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322946
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322946
    reference: chr 1
allele count: 2
allele frequency: 1.647690761397901e-5
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.530-4C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.334-4C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1042-4C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.609-4C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1042-4C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.328-4C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1102-4C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.688-4C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.688-4C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.132-4C>T
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3734
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20587
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1102-4C>T
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

1-160322947-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322947
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322947
    reference: chr 1
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.609-3C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.328-3C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1102-3C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.688-3C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1042-3C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1042-3C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.132-3C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.530-3C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.334-3C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.688-3C>T
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3011
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1102-3C>T
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

1-160322968-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322968
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322968
    reference: chr 1
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1120T>A
  hgvsp: ENSP00000294785.5:p.Leu374Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.352T>A
  hgvsp: ENSP00000410124.1:p.Leu118Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1060T>A
  hgvsp: ENSP00000357042.1:p.Leu354Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.150T>A
  hgvsp: ENSP00000407849.1:p.Leu51Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.548T>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.346T>A
  hgvsp: ENSP00000357044.4:p.Leu116Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.627T>A
  hgvsp: ENSP00000388118.1:p.Leu210Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.706T>A
  hgvsp: ENSP00000390409.1:p.Leu236Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1060T>A
  hgvsp: ENSP00000376047.4:p.Leu354Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.706T>A
  hgvsp: ENSP00000442605.1:p.Leu236Ile
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20625
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu374Ile
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

1-160322986-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160322986
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160322986
    reference: chr 1
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1078A>G
  hgvsp: ENSP00000357042.1:p.Thr360Ala
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1078A>G
  hgvsp: ENSP00000376047.4:p.Thr360Ala
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.724A>G
  hgvsp: ENSP00000390409.1:p.Thr242Ala
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.364A>G
  hgvsp: ENSP00000357044.4:p.Thr122Ala
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.168A>G
  hgvsp: ENSP00000407849.1:p.Thr57Ala
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.370A>G
  hgvsp: ENSP00000410124.1:p.Thr124Ala
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.566A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.645A>G
  hgvsp: ENSP00000388118.1:p.Thr216Ala
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1138A>G
  hgvsp: ENSP00000294785.5:p.Thr380Ala
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.724A>G
  hgvsp: ENSP00000442605.1:p.Thr242Ala
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13453
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr380Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

1-160323016-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323016
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323016
    reference: chr 1
allele count: 2
allele frequency: 1.647880825258717e-5
allele num: 121368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1108G>C
  hgvsp: ENSP00000376047.4:p.Val370Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.596G>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.394G>C
  hgvsp: ENSP00000357044.4:p.Val132Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.754G>C
  hgvsp: ENSP00000390409.1:p.Val252Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.400G>C
  hgvsp: ENSP00000410124.1:p.Val134Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.675G>C
  hgvsp: ENSP00000388118.1:p.Val226Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1168G>C
  hgvsp: ENSP00000294785.5:p.Val390Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.754G>C
  hgvsp: ENSP00000442605.1:p.Val252Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.198G>C
  hgvsp: ENSP00000407849.1:p.Val67Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1108G>C
  hgvsp: ENSP00000357042.1:p.Val370Leu
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val390Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

1-160323019-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323019
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323019
    reference: chr 1
allele count: 4
allele frequency: 3.296196189597204e-5
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.403C>T
  hgvsp: ENSP00000410124.1:p.Arg135Trp
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.757C>T
  hgvsp: ENSP00000442605.1:p.Arg253Trp
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.397C>T
  hgvsp: ENSP00000357044.4:p.Arg133Trp
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1171C>T
  hgvsp: ENSP00000294785.5:p.Arg391Trp
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.201C>T
  hgvsp: ENSP00000407849.1:p.Arg68Trp
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.599C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.757C>T
  hgvsp: ENSP00000390409.1:p.Arg253Trp
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1111C>T
  hgvsp: ENSP00000357042.1:p.Arg371Trp
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1111C>T
  hgvsp: ENSP00000376047.4:p.Arg371Trp
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.678C>T
  hgvsp: ENSP00000388118.1:p.Arg227Trp
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2971
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg391Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-160323019-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323019
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323019
    reference: chr 1
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1111C>A
  hgvsp: ENST00000368063.1:c.1111C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.599C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.678C>A
  hgvsp: ENST00000424645.1:c.678C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1171C>A
  hgvsp: ENST00000294785.5:c.1171C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.757C>A
  hgvsp: ENST00000421914.1:c.757C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.403C>A
  hgvsp: ENST00000424754.1:c.403C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1111C>A
  hgvsp: ENST00000392212.4:c.1111C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.201C>A
  hgvsp: ENST00000435149.1:c.201C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.757C>A
  hgvsp: ENST00000535857.1:c.757C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.397C>A
  hgvsp: ENST00000368065.4:c.397C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26261
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg391Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

1-160323019-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323019
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323019
    reference: chr 1
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1171C>G
  hgvsp: ENSP00000294785.5:p.Arg391Gly
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1111C>G
  hgvsp: ENSP00000357042.1:p.Arg371Gly
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.757C>G
  hgvsp: ENSP00000442605.1:p.Arg253Gly
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.757C>G
  hgvsp: ENSP00000390409.1:p.Arg253Gly
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.397C>G
  hgvsp: ENSP00000357044.4:p.Arg133Gly
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.599C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1111C>G
  hgvsp: ENSP00000376047.4:p.Arg371Gly
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.403C>G
  hgvsp: ENSP00000410124.1:p.Arg135Gly
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.201C>G
  hgvsp: ENSP00000407849.1:p.Arg68Gly
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.678C>G
  hgvsp: ENSP00000388118.1:p.Arg227Gly
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg391Gly
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

1-160323023-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323023
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323023
    reference: chr 1
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.401A>G
  hgvsp: ENSP00000357044.4:p.Asn134Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1175A>G
  hgvsp: ENSP00000294785.5:p.Asn392Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.761A>G
  hgvsp: ENSP00000390409.1:p.Asn254Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.603A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.407A>G
  hgvsp: ENSP00000410124.1:p.Asn136Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.205A>G
  hgvsp: ENSP00000407849.1:p.Asn69Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1115A>G
  hgvsp: ENSP00000376047.4:p.Asn372Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.682A>G
  hgvsp: ENSP00000388118.1:p.Asn228Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.761A>G
  hgvsp: ENSP00000442605.1:p.Asn254Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1115A>G
  hgvsp: ENSP00000357042.1:p.Asn372Ser
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3003
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn392Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/1-160323025-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323025
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323025
    reference: chr 1
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1177C>A
  hgvsp: ENSP00000294785.5:p.Gln393Lys
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.763C>A
  hgvsp: ENSP00000442605.1:p.Gln255Lys
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.605C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.207C>A
  hgvsp: ENSP00000407849.1:p.Gln70Lys
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.403C>A
  hgvsp: ENSP00000357044.4:p.Gln135Lys
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1117C>A
  hgvsp: ENSP00000376047.4:p.Gln373Lys
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000390409
  ensembl transcript: ENST00000421914
  gene symbol: NCSTN
  hgvsc: ENST00000421914.1:c.763C>A
  hgvsp: ENSP00000390409.1:p.Gln255Lys
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.409C>A
  hgvsp: ENSP00000410124.1:p.Gln137Lys
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.684C>A
  hgvsp: ENSP00000388118.1:p.Gln229Lys
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1117C>A
  hgvsp: ENSP00000357042.1:p.Gln373Lys
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln393Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

1-160323049-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323049
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323049
    reference: chr 1
allele count: 1
allele frequency: 8.266785708380868e-6
allele num: 120966
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1179+22A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.686+22A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.209+22A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.405+22A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.607+22A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.411+22A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1119+22A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.765+22A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1119+22A>G
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7157
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-160323052-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323052
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323052
    reference: chr 1
allele count: 1
allele frequency: 8.270477702792114e-6
allele num: 120912
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.607+25T>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1179+25T>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1119+25T>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.405+25T>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1119+25T>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.765+25T>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.411+25T>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.209+25T>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.686+25T>C
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6941
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3870
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

1-160323059-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323059
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323059
    reference: chr 1
allele count: 343
allele frequency: 2.839780103324944e-3
allele num: 120784
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1119+32C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.765+32C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.405+32C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.607+32C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1179+32C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1119+32C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.686+32C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.209+32C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.411+32C>G
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 17783
  bin: 2.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 9.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 12174
  bin: 3.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 5.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 5533
  bin: 3.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 4.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 4.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3781
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2912
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-160323062-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323062
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323062
    reference: chr 1
allele count: 1
allele frequency: 8.283219853221344e-6
allele num: 120726
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1179+35A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.765+35A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.607+35A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1119+35A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.209+35A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.411+35A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1119+35A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.405+35A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.686+35A>G
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5451
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19596
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP

1-160323066-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323066
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323066
    reference: chr 1
allele count: 19
allele frequency: 1.575194826728569e-4
allele num: 120620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1119+39C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.405+39C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1179+39C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.607+39C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1119+39C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.765+39C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.209+39C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.411+39C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.686+39C>T
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5371
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6198
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15497
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10947
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17701
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6134
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

1-160323071-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323071
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323071
    reference: chr 1
allele count: 2
allele frequency: 1.660412446451699e-5
allele num: 120452
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1119+44A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.405+44A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1179+44A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.608-42A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.686+44A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.209+44A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1119+44A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.411+44A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.765+44A>G
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9781
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14007
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2570
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2854
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2785
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

1-160323073-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323073
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323073
    reference: chr 1
allele count: 1
allele frequency: 8.311032063961702e-6
allele num: 120322
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1179+46T>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.765+46T>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1119+46T>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1119+46T>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.405+46T>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.608-40T>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.411+46T>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.686+46T>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.209+46T>A
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7594
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2609
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1862
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD

1-160323077-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323077
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323077
    reference: chr 1
allele count: 1
allele frequency: 8.334305668994715e-6
allele num: 119986
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.608-36G>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1119+50G>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1179+50G>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1119+50G>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.405+50G>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.765+50G>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.686+50G>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.411+50G>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.209+50G>C
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3629
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2824
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13305
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3564
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS

http://identifiers.org/exac.variant/1-160323078-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323078
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323079
    reference: chr 1
allele count: 1
allele frequency: 8.356592515835743e-6
allele num: 119666
alternate allele: AC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.608-31dupC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1119+55dupC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.765+55dupC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.209+55dupC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1179+55dupC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.405+55dupC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1119+55dupC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.411+55dupC
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.686+55dupC
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8323
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4861
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4945
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

1-160323868-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323868
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323868
    reference: chr 1
allele count: 2
allele frequency: 1.6824253844342e-5
allele num: 118876
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1120-40C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.766-40C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.687-40C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.210-40C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.412-40C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.406-40C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.787-40C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1180-40C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1120-40C>T
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18756
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11193
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6510
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

1-160323871-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323871
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323871
    reference: chr 1
allele count: 1
allele frequency: 8.381808123648433e-6
allele num: 119306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.406-37C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1180-37C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.412-37C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1120-37C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.766-37C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.787-37C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.210-37C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.687-37C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1120-37C>T
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19856
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17953
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6812
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3219
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

1-160323875-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323875
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323875
    reference: chr 1
allele count: 1
allele frequency: 8.364281173675934e-6
allele num: 119556
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1120-33C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.406-33C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1180-33C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.787-33C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.687-33C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.210-33C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.766-33C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1120-33C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.412-33C>T
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21410
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7562
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4388
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

1-160323888-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323888
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323888
    reference: chr 1
allele count: 1
allele frequency: 8.328336331534413e-6
allele num: 120072
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.406-20A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1120-20A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.687-20A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.412-20A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1180-20A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1120-20A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.210-20A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.766-20A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.787-20A>G
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3686
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3666
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

1-160323896-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323896
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323896
    reference: chr 1
allele count: 4
allele frequency: 3.322148765821733e-5
allele num: 120404
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1180-12C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.766-12C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.412-12C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.210-12C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1120-12C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.687-12C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.787-12C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1120-12C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.406-12C>T
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8701
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3791
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22252
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

1-160323897-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323897
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323897
    reference: chr 1
allele count: 5
allele frequency: 4.149997510001494e-5
allele num: 120482
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.210-11G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.687-11G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.766-11G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1180-11G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1120-11G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.412-11G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.406-11G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1120-11G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.787-11G>A
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8818
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2370
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13700
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

1-160323900-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323900
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323900
    reference: chr 1
allele count: 2
allele frequency: 1.658622348277521e-5
allele num: 120582
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.406-8C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.787-8C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1120-8C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.210-8C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1120-8C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.412-8C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1180-8C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.687-8C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.766-8C>T
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9036
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22315
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1180-8C>T
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/1-160323900-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323900
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323900
    reference: chr 1
allele count: 3
allele frequency: 2.487933522416281e-5
allele num: 120582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.210-8C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.787-8C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1180-8C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1120-8C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.766-8C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.412-8C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.406-8C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.687-8C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1120-8C>A
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3855
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1180-8C>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

1-160323902-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323902
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323902
    reference: chr 1
allele count: 2
allele frequency: 1.656342134031205e-5
allele num: 120748
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.210-6C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.412-6C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.687-6C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1180-6C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.766-6C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1120-6C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.787-6C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1120-6C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.406-6C>G
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11464
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3983
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
hgvs: c.1180-6C>G
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

1-160323903-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323903
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323903
    reference: chr 1
allele count: 5293
allele frequency: 4.379737199218879e-2
allele num: 120852
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1180-5C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.687-5C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.406-5C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.766-5C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.787-5C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1120-5C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1120-5C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.210-5C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.412-5C>G
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.75e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 4.75e1
  variant carriers: 499
genotype depth: GenotypeDepth
  all individuals: 4178
  bin: 3.75e1
  variant carriers: 711
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 20884
  bin: 2.25e1
  variant carriers: 265
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.25e1
  variant carriers: 330
genotype depth: GenotypeDepth
  all individuals: 9331
  bin: 3.25e1
  variant carriers: 677
genotype depth: GenotypeDepth
  all individuals: 13445
  bin: 2.75e1
  variant carriers: 514
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 5.75e1
  variant carriers: 232
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 4.25e1
  variant carriers: 590
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 6.25e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 9.75e1
  variant carriers: 566
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 7402
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.25e1
  variant carriers: 3
hgvs: c.1180-5C>G
num of homozygotes: 130
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-160323904-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323904
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323904
    reference: chr 1
allele count: 4
allele frequency: 3.308300526019784e-5
allele num: 120908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.210-4C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1180-4C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.412-4C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1120-4C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.687-4C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.766-4C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.406-4C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.787-4C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1120-4C>A
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9456
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1180-4C>A
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

1-160323927-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323927
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323927
    reference: chr 1
allele count: 11
allele frequency: 9.071416790367805e-5
allele num: 121260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.706C>T
  hgvsp: ENSP00000388118.1:p.Thr236Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1139C>T
  hgvsp: ENSP00000357042.1:p.Thr380Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.229C>T
  hgvsp: ENSP00000407849.1:p.Thr77Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1139C>T
  hgvsp: ENSP00000376047.4:p.Thr380Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.425C>T
  hgvsp: ENSP00000357044.4:p.Thr142Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1199C>T
  hgvsp: ENSP00000294785.5:p.Thr400Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.785C>T
  hgvsp: ENSP00000442605.1:p.Thr262Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.431C>T
  hgvsp: ENSP00000410124.1:p.Thr144Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.806C>T
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9878
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13984
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7975
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2596
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr400Ile
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ

1-160323929-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323929
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323929
    reference: chr 1
allele count: 5
allele frequency: 4.122963256151461e-5
allele num: 121272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.231T>C
  hgvsp: ENST00000435149.1:c.231T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.808T>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.427T>C
  hgvsp: ENST00000368065.4:c.427T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.787T>C
  hgvsp: ENST00000535857.1:c.787T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.708T>C
  hgvsp: ENST00000424645.1:c.708T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1201T>C
  hgvsp: ENST00000294785.5:c.1201T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1141T>C
  hgvsp: ENST00000392212.4:c.1141T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.433T>C
  hgvsp: ENST00000424754.1:c.433T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1141T>C
  hgvsp: ENST00000368063.1:c.1141T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4042
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu401Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

1-160323939-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323939
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323939
    reference: chr 1
allele count: 4
allele frequency: 3.297663605335619e-5
allele num: 121298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.443G>A
  hgvsp: ENSP00000410124.1:p.Ser148Asn
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1151G>A
  hgvsp: ENSP00000376047.4:p.Ser384Asn
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1151G>A
  hgvsp: ENSP00000357042.1:p.Ser384Asn
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.797G>A
  hgvsp: ENSP00000442605.1:p.Ser266Asn
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.718G>A
  hgvsp: ENSP00000388118.1:p.Ser240Asn
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.818G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.241G>A
  hgvsp: ENSP00000407849.1:p.Ser81Asn
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1211G>A
  hgvsp: ENSP00000294785.5:p.Ser404Asn
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.437G>A
  hgvsp: ENSP00000357044.4:p.Ser146Asn
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5276
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser404Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

1-160323941-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323941
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323941
    reference: chr 1
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1153G>A
  hgvsp: ENSP00000376047.4:p.Gly385Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.243G>A
  hgvsp: ENSP00000407849.1:p.Gly82Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.799G>A
  hgvsp: ENSP00000442605.1:p.Gly267Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1153G>A
  hgvsp: ENSP00000357042.1:p.Gly385Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.439G>A
  hgvsp: ENSP00000357044.4:p.Gly147Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1213G>A
  hgvsp: ENSP00000294785.5:p.Gly405Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.445G>A
  hgvsp: ENSP00000410124.1:p.Gly149Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.720G>A
  hgvsp: ENSP00000388118.1:p.Gly241Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.820G>A
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8023
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4061
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly405Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

1-160323952-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323952
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323952
    reference: chr 1
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.731C>G
  hgvsp: ENST00000424645.1:c.731C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.810C>G
  hgvsp: ENST00000535857.1:c.810C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.254C>G
  hgvsp: ENST00000435149.1:c.254C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1224C>G
  hgvsp: ENST00000294785.5:c.1224C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.456C>G
  hgvsp: ENST00000424754.1:c.456C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.831C>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1164C>G
  hgvsp: ENST00000392212.4:c.1164C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.450C>G
  hgvsp: ENST00000368065.4:c.450C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1164C>G
  hgvsp: ENST00000368063.1:c.1164C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20748
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2625
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val408Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

1-160323953-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323953
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323953
    reference: chr 1
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.811C>T
  hgvsp: ENSP00000442605.1:p.Pro271Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.457C>T
  hgvsp: ENSP00000410124.1:p.Pro153Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1225C>T
  hgvsp: ENSP00000294785.5:p.Pro409Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.732C>T
  hgvsp: ENSP00000388118.1:p.Pro245Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1165C>T
  hgvsp: ENSP00000357042.1:p.Pro389Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1165C>T
  hgvsp: ENSP00000376047.4:p.Pro389Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.832C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.255C>T
  hgvsp: ENSP00000407849.1:p.Pro86Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.451C>T
  hgvsp: ENSP00000357044.4:p.Pro151Ser
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8048
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5315
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro409Ser
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

1-160323957-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323957
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323957
    reference: chr 1
allele count: 24
allele frequency: 1.977750309023486e-4
allele num: 121350
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1229C>T
  hgvsp: ENSP00000294785.5:p.Ala410Val
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.736C>T
  hgvsp: ENSP00000388118.1:p.Ala246Val
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.815C>T
  hgvsp: ENSP00000442605.1:p.Ala272Val
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1169C>T
  hgvsp: ENSP00000357042.1:p.Ala390Val
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1169C>T
  hgvsp: ENSP00000376047.4:p.Ala390Val
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.259C>T
  hgvsp: ENSP00000407849.1:p.Ala87Val
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.461C>T
  hgvsp: ENSP00000410124.1:p.Ala154Val
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.836C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.455C>T
  hgvsp: ENSP00000357044.4:p.Ala152Val
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13337
  bin: 9.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20713
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala410Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum

1-160323959-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323959
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323959
    reference: chr 1
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1171G>A
  hgvsp: ENSP00000357042.1:p.Val391Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.457G>A
  hgvsp: ENSP00000357044.4:p.Val153Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.838G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1231G>A
  hgvsp: ENSP00000294785.5:p.Val411Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1171G>A
  hgvsp: ENSP00000376047.4:p.Val391Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.738G>A
  hgvsp: ENSP00000388118.1:p.Val247Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.817G>A
  hgvsp: ENSP00000442605.1:p.Val273Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.463G>A
  hgvsp: ENSP00000410124.1:p.Val155Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.261G>A
  hgvsp: ENSP00000407849.1:p.Val88Ile
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8048
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20705
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val411Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

1-160323965-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323965
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323965
    reference: chr 1
allele count: 4
allele frequency: 3.296196189597204e-5
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.469C>T
  hgvsp: ENSP00000410124.1:p.Leu157Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.844C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1177C>T
  hgvsp: ENSP00000376047.4:p.Leu393Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1177C>T
  hgvsp: ENSP00000357042.1:p.Leu393Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.744C>T
  hgvsp: ENSP00000388118.1:p.Leu249Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.823C>T
  hgvsp: ENSP00000442605.1:p.Leu275Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1237C>T
  hgvsp: ENSP00000294785.5:p.Leu413Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.267C>T
  hgvsp: ENSP00000407849.1:p.Leu90Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.463C>T
  hgvsp: ENSP00000357044.4:p.Leu155Phe
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu413Phe
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ

1-160323976-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323976
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323976
    reference: chr 1
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1248A>G
  hgvsp: ENST00000294785.5:c.1248A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.278A>G
  hgvsp: ENST00000435149.1:c.278A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.474A>G
  hgvsp: ENST00000368065.4:c.474A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.855A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1188A>G
  hgvsp: ENST00000368063.1:c.1188A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1188A>G
  hgvsp: ENST00000392212.4:c.1188A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.755A>G
  hgvsp: ENST00000424645.1:c.755A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.834A>G
  hgvsp: ENST00000535857.1:c.834A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.480A>G
  hgvsp: ENST00000424754.1:c.480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro416Pro
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

1-160323977-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323977
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323977
    reference: chr 1
allele count: 332
allele frequency: 2.73561740907368e-3
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1189A>T
  hgvsp: ENSP00000357042.1:p.Asn397Tyr
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.475A>T
  hgvsp: ENSP00000357044.4:p.Asn159Tyr
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.279A>T
  hgvsp: ENSP00000407849.1:p.Asn94Tyr
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.756A>T
  hgvsp: ENSP00000388118.1:p.Asn253Tyr
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1189A>T
  hgvsp: ENSP00000376047.4:p.Asn397Tyr
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1249A>T
  hgvsp: ENSP00000294785.5:p.Asn417Tyr
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.856A>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.481A>T
  hgvsp: ENSP00000410124.1:p.Asn161Tyr
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.835A>T
  hgvsp: ENSP00000442605.1:p.Asn279Tyr
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 6.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 9.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 4467
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10073
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 14159
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn417Tyr
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD

1-160323995-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160323995
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160323995
    reference: chr 1
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1207C>T
  hgvsp: ENSP00000357042.1:p.Pro403Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.874C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1207C>T
  hgvsp: ENSP00000376047.4:p.Pro403Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.853C>T
  hgvsp: ENSP00000442605.1:p.Pro285Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1267C>T
  hgvsp: ENSP00000294785.5:p.Pro423Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.493C>T
  hgvsp: ENSP00000357044.4:p.Pro165Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.499C>T
  hgvsp: ENSP00000410124.1:p.Pro167Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.774C>T
  hgvsp: ENSP00000388118.1:p.Pro259Ser
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.297C>T
  hgvsp: ENSP00000407849.1:p.Pro100Ser
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8048
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro423Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

1-160324000-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160324000
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160324000
    reference: chr 1
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.504A>G
  hgvsp: ENST00000424754.1:c.504A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.498A>G
  hgvsp: ENST00000368065.4:c.498A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.879A>G
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1212A>G
  hgvsp: ENST00000368063.1:c.1212A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1272A>G
  hgvsp: ENST00000294785.5:c.1272A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.858A>G
  hgvsp: ENST00000535857.1:c.858A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.779A>G
  hgvsp: ENST00000424645.1:c.779A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1212A>G
  hgvsp: ENST00000392212.4:c.1212A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.302A>G
  hgvsp: ENST00000435149.1:c.302A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4249
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20704
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro424Pro
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS

1-160324012-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160324012
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160324012
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.510G>A
  hgvsp: ENST00000368065.4:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1284G>A
  hgvsp: ENST00000294785.5:c.1284G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1224G>A
  hgvsp: ENST00000392212.4:c.1224G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.516G>A
  hgvsp: ENST00000424754.1:c.516G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.870G>A
  hgvsp: ENST00000535857.1:c.870G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1224G>A
  hgvsp: ENST00000368063.1:c.1224G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.314G>A
  hgvsp: ENST00000435149.1:c.314G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.891G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.791G>A
  hgvsp: ENST00000424645.1:c.791G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20712
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13525
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln428Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-160324019-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160324019
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160324019
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.877C>A
  hgvsp: ENSP00000442605.1:p.Leu293Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.898C>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1231C>A
  hgvsp: ENSP00000357042.1:p.Leu411Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.321C>A
  hgvsp: ENSP00000407849.1:p.Leu108Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1291C>A
  hgvsp: ENSP00000294785.5:p.Leu431Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1231C>A
  hgvsp: ENSP00000376047.4:p.Leu411Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.523C>A
  hgvsp: ENSP00000410124.1:p.Leu175Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.798C>A
  hgvsp: ENSP00000388118.1:p.Leu267Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.517C>A
  hgvsp: ENSP00000357044.4:p.Leu173Ile
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu431Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-160324023-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160324023
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160324023
    reference: chr 1
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1235G>A
  hgvsp: ENSP00000376047.4:p.Arg412Gln
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.521G>A
  hgvsp: ENSP00000357044.4:p.Arg174Gln
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.881G>A
  hgvsp: ENSP00000442605.1:p.Arg294Gln
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.527G>A
  hgvsp: ENSP00000410124.1:p.Arg176Gln
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.802G>A
  hgvsp: ENSP00000388118.1:p.Arg268Gln
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.902G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.325G>A
  hgvsp: ENSP00000407849.1:p.Arg109Gln
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1295G>A
  hgvsp: ENSP00000294785.5:p.Arg432Gln
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1235G>A
  hgvsp: ENSP00000357042.1:p.Arg412Gln
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4251
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg432Gln
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

1-160324027-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160324027
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160324027
    reference: chr 1
allele count: 9
allele frequency: 7.413142678286081e-5
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1239T>C
  hgvsp: ENST00000392212.4:c.1239T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.531T>C
  hgvsp: ENST00000424754.1:c.531T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1239T>C
  hgvsp: ENST00000368063.1:c.1239T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1299T>C
  hgvsp: ENST00000294785.5:c.1299T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.806T>C
  hgvsp: ENST00000424645.1:c.806T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.906T>C
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.885T>C
  hgvsp: ENST00000535857.1:c.885T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.329T>C
  hgvsp: ENST00000435149.1:c.329T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.525T>C
  hgvsp: ENST00000368065.4:c.525T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala433Ala
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-160324038-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160324038
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160324038
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1250C>T
  hgvsp: ENSP00000376047.4:p.Ser417Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.536C>T
  hgvsp: ENSP00000357044.4:p.Ser179Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.542C>T
  hgvsp: ENSP00000410124.1:p.Ser181Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.896C>T
  hgvsp: ENSP00000442605.1:p.Ser299Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.817C>T
  hgvsp: ENSP00000388118.1:p.Ser273Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1250C>T
  hgvsp: ENSP00000357042.1:p.Ser417Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.917C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1310C>T
  hgvsp: ENSP00000294785.5:p.Ser437Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.340C>T
  hgvsp: ENSP00000407849.1:p.Ser114Phe
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5324
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser437Phe
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

1-160324042-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160324042
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160324042
    reference: chr 1
allele count: 334
allele frequency: 2.75100897784367e-3
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.540C>T
  hgvsp: ENST00000368065.4:c.540C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1254C>T
  hgvsp: ENST00000392212.4:c.1254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.546C>T
  hgvsp: ENST00000424754.1:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1254C>T
  hgvsp: ENST00000368063.1:c.1254C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1314C>T
  hgvsp: ENST00000294785.5:c.1314C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.821C>T
  hgvsp: ENST00000424645.1:c.821C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.921C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.900C>T
  hgvsp: ENST00000535857.1:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.344C>T
  hgvsp: ENST00000435149.1:c.344C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14182
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 9.75e1
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13767
  bin: 9.75e1
  variant carriers: 326
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4230
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly438Gly
num of homozygotes: 8
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

1-160324043-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160324043
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160324043
    reference: chr 1
allele count: 11
allele frequency: 9.060209208467177e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.922G>A
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.901G>A
  hgvsp: ENSP00000442605.1:p.Val301Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.547G>A
  hgvsp: ENSP00000410124.1:p.Val183Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.822G>A
  hgvsp: ENSP00000388118.1:p.Val275Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.345G>A
  hgvsp: ENSP00000407849.1:p.Val116Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1255G>A
  hgvsp: ENSP00000357042.1:p.Val419Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1315G>A
  hgvsp: ENSP00000294785.5:p.Val439Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1255G>A
  hgvsp: ENSP00000376047.4:p.Val419Ile
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.541G>A
  hgvsp: ENSP00000357044.4:p.Val181Ile
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val439Ile
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

1-160324043-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160324043
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160324043
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.345G>C
  hgvsp: ENSP00000407849.1:p.Val116Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1255G>C
  hgvsp: ENSP00000357042.1:p.Val419Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1315G>C
  hgvsp: ENSP00000294785.5:p.Val439Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.901G>C
  hgvsp: ENSP00000442605.1:p.Val301Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1255G>C
  hgvsp: ENSP00000376047.4:p.Val419Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.541G>C
  hgvsp: ENSP00000357044.4:p.Val181Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.547G>C
  hgvsp: ENSP00000410124.1:p.Val183Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.822G>C
  hgvsp: ENSP00000388118.1:p.Val275Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.922G>C
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4074
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4237
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val439Leu
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

1-160324043-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160324043
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160324043
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1255G>T
  hgvsp: ENSP00000376047.4:p.Val419Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.922G>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.822G>T
  hgvsp: ENSP00000388118.1:p.Val275Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1315G>T
  hgvsp: ENSP00000294785.5:p.Val439Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.541G>T
  hgvsp: ENSP00000357044.4:p.Val181Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.901G>T
  hgvsp: ENSP00000442605.1:p.Val301Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.547G>T
  hgvsp: ENSP00000410124.1:p.Val183Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1255G>T
  hgvsp: ENSP00000357042.1:p.Val419Phe
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.345G>T
  hgvsp: ENSP00000407849.1:p.Val116Phe
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4237
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4074
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val439Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-160324046-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160324046
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160324046
    reference: chr 1
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.544G>C
  hgvsp: ENSP00000357044.4:p.Val182Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1318G>C
  hgvsp: ENSP00000294785.5:p.Val440Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1258G>C
  hgvsp: ENSP00000357042.1:p.Val420Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.825G>C
  hgvsp: ENSP00000388118.1:p.Val276Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1258G>C
  hgvsp: ENSP00000376047.4:p.Val420Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.348G>C
  hgvsp: ENSP00000407849.1:p.Val117Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.550G>C
  hgvsp: ENSP00000410124.1:p.Val184Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.904G>C
  hgvsp: ENSP00000442605.1:p.Val302Leu
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.925G>C
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5311
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20610
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val440Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

1-160324058-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160324058
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160324058
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000442605
  ensembl transcript: ENST00000535857
  gene symbol: NCSTN
  hgvsc: ENST00000535857.1:c.916C>T
  hgvsp: ENSP00000442605.1:p.His306Tyr
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.556C>T
  hgvsp: ENSP00000357044.4:p.His186Tyr
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000407849
  ensembl transcript: ENST00000435149
  gene symbol: NCSTN
  hgvsc: ENST00000435149.1:c.360C>T
  hgvsp: ENSP00000407849.1:p.His121Tyr
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162736
  ensembl transcript: ENST00000459963
  gene symbol: NCSTN
  hgvsc: ENST00000459963.1:n.937C>T
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000376047
  ensembl transcript: ENST00000392212
  gene symbol: NCSTN
  hgvsc: ENST00000392212.4:c.1270C>T
  hgvsp: ENSP00000376047.4:p.His424Tyr
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000410124
  ensembl transcript: ENST00000424754
  gene symbol: NCSTN
  hgvsc: ENST00000424754.1:c.562C>T
  hgvsp: ENSP00000410124.1:p.His188Tyr
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357042
  ensembl transcript: ENST00000368063
  gene symbol: NCSTN
  hgvsc: ENST00000368063.1:c.1270C>T
  hgvsp: ENSP00000357042.1:p.His424Tyr
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000294785
  ensembl transcript: ENST00000294785
  gene symbol: NCSTN
  hgvsc: ENST00000294785.5:c.1330C>T
  hgvsp: ENSP00000294785.5:p.His444Tyr
  variant of: http://identifiers.org/hgnc/17091
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000388118
  ensembl transcript: ENST00000424645
  gene symbol: NCSTN
  hgvsc: ENST00000424645.1:c.837C>T
  hgvsp: ENSP00000388118.1:p.His280Tyr
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4074
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4239
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His444Tyr
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

1-160324067-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160324067
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160324067
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162736
  ensembl protein: ENSP00000357044
  ensembl transcript: ENST00000368065
  gene symbol: NCSTN
  hgvsc: ENST00000368065.4:c.565G>A
  hgvsp: ENSP00000357044.4:p.Ala189Thr
  variant of: http://identifiers.org/hgnc/17091
canonical: true
consequence: missense
filter: PASS
hgvs: p.Ala447Thr
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 1222
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3068
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2591
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5375
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1516
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 653
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2322
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2043
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 220
allele frequency: 2.635993290198898e-2
allele num: 8346
num of homozygotes: 4

Other
type: Population
allele count: 6
allele frequency: 6.711409395973154e-3
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 114
allele frequency: 6.950371905865138e-3
allele num: 16402
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.774538386783285e-4
allele num: 10290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.121313469139557e-5
allele num: 65780
num of homozygotes: 0

Latino
type: Population
allele count: 286
allele frequency: 2.518048952280331e-2
allele num: 11358
num of homozygotes: 7

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-2

FS
type: SiteQuality
SIO_000300: 6.33e-1

DP
type: SiteQuality
SIO_000300: 2.209702e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.32e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

QD
type: SiteQuality
SIO_000300: 1.36e1

GenotypeQuality
all individuals: 1566
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3432
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2142
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11938
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2416
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2092
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3671
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2812
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3983
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13625
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8066
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11180
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.224739742804654e-4
allele num: 16330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64794
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.143153e6

FS
type: SiteQuality
SIO_000300: 1.81e0

QD
type: SiteQuality
SIO_000300: 1.808e1

MQ
type: SiteQuality
SIO_000300: 5.773e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 9.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.76e-1

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13478
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1948
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23864
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3074
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.739e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.536e0

VQSLOD
type: SiteQuality
SIO_000300: -5.266e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-1

FS
type: SiteQuality
SIO_000300: 3.368e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.17e-1

DP
type: SiteQuality
SIO_000300: 2.384881e6

MQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

QD
type: SiteQuality
SIO_000300: 1.424e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13463
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7622
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4026
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3016
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25885
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.5e-1

FS
type: SiteQuality
SIO_000300: 1.379e0

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 1.51e1

DP
type: SiteQuality
SIO_000300: 2.390493e6

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1937
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26063
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3016
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7623
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2999
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4029
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13463
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.391649e6

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.528e0

MQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

GenotypeQuality
all individuals: 4024
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3014
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7632
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2996
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26087
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 2.391752e6

VQSLOD
type: SiteQuality
SIO_000300: 3.51e-1

QD
type: SiteQuality
SIO_000300: 1.097e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.258e0

FS
type: SiteQuality
SIO_000300: 9.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1936
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26155
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7645
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13463
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2994
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4025
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -9.786e-1

QD
type: SiteQuality
SIO_000300: 1.203e1

DP
type: SiteQuality
SIO_000300: 2.392331e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

MQRankSum
type: SiteQuality
SIO_000300: 9.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-2

FS
type: SiteQuality
SIO_000300: 1.0815e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.54e-1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26271
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2995
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4020
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13463
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1935
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7650
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3015
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.78168362627197e-4
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.97e-1

DP
type: SiteQuality
SIO_000300: 2.393351e6

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.235e1

FS
type: SiteQuality
SIO_000300: 3.468e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13463
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 31
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4020
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2995
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3015
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7650
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.593360995850622e-4
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.235e1

FS
type: SiteQuality
SIO_000300: 3.468e0

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

DP
type: SiteQuality
SIO_000300: 2.393351e6

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4017
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2989
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26247
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3009
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13465
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 1244
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.098384244132018e-4
allele num: 66718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.97e-1

DP
type: SiteQuality
SIO_000300: 2.393962e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

MQ
type: SiteQuality
SIO_000300: 6.005e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.68e-1

QD
type: SiteQuality
SIO_000300: 1.122e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26247
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4017
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2989
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13465
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3009
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728907330567082e-4
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.122e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

MQ
type: SiteQuality
SIO_000300: 6.005e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.71e0

DP
type: SiteQuality
SIO_000300: 2.393962e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.97e-1

GenotypeQuality
all individuals: 26274
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3006
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4016
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2985
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7648
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13454
bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.624277456647399e-4
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.3995e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: -1.921e0

DP
type: SiteQuality
SIO_000300: 2.39422e6

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.71e-1

QD
type: SiteQuality
SIO_000300: 1.358e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13454
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2985
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7648
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4016
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3006
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26274
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.358e1

FS
type: SiteQuality
SIO_000300: 1.3995e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.39422e6

VQSLOD
type: SiteQuality
SIO_000300: -1.921e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

GenotypeQuality
all individuals: 4019
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13454
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26294
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3009
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7650
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1931
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2984
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496537665997182e-5
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 2.393185e6

VQSLOD
type: SiteQuality
SIO_000300: 6.919999999999999e-1

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.97e-1

FS
type: SiteQuality
SIO_000300: 3.032e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.24e-1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3011
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13454
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26348
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7656
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4017
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997512064986062e-5
allele num: 66722
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-3

FS
type: SiteQuality
SIO_000300: 5.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.31e-1

QD
type: SiteQuality
SIO_000300: 1.078e1

DP
type: SiteQuality
SIO_000300: 2.393199e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

GenotypeQuality
all individuals: 3011
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26348
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4017
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13454
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7656
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.078e1

MQ
type: SiteQuality
SIO_000300: 5.986e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 5.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.32e0

MQRankSum
type: SiteQuality
SIO_000300: 8.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-3

DP
type: SiteQuality
SIO_000300: 2.393199e6

GenotypeQuality
all individuals: 1930
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2989
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26353
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4016
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7653
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13452
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.393143e6

VQSLOD
type: SiteQuality
SIO_000300: 4.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.185e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.915e1

QD
type: SiteQuality
SIO_000300: 1.144e1

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7659
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4018
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13453
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26375
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3012
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.393643e6

QD
type: SiteQuality
SIO_000300: 1.085e1

MQRankSum
type: SiteQuality
SIO_000300: -1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.802e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.04e-1

FS
type: SiteQuality
SIO_000300: 1.2764e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2984
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7653
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4016
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26384
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.363e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.66e-1

FS
type: SiteQuality
SIO_000300: 9.64e-1

DP
type: SiteQuality
SIO_000300: 2.39367e6

VQSLOD
type: SiteQuality
SIO_000300: 8.02e-1

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3007
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26301
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1928
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4011
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13452
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2971
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7639
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.392933e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.71e-1

FS
type: SiteQuality
SIO_000300: 3.042e0

QD
type: SiteQuality
SIO_000300: 1.354e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

VQSLOD
type: SiteQuality
SIO_000300: 8.91e-1

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4009
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26261
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13453
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7630
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.497211728728189e-5
allele num: 66708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.203e1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

FS
type: SiteQuality
SIO_000300: 5.78e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 2.392381e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.21e-1

GenotypeQuality
all individuals: 13453
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7630
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4009
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2971
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.21e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 2.392381e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 5.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

QD
type: SiteQuality
SIO_000300: 1.203e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

GenotypeQuality
all individuals: 26261
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13453
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3004
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7630
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2971
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4009
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

FS
type: SiteQuality
SIO_000300: 5.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

DP
type: SiteQuality
SIO_000300: 2.392381e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.203e1

GenotypeQuality
all individuals: 26203
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13449
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4008
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7619
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2969
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.68e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.344e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.25e-1

DP
type: SiteQuality
SIO_000300: 2.390847e6

GenotypeDepth
all individuals: 1085
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7611
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3000
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4006
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26181
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2967
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13446
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.053e1

FS
type: SiteQuality
SIO_000300: 2.565e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.554e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.81e-1

DP
type: SiteQuality
SIO_000300: 2.390425e6

VQSLOD
type: SiteQuality
SIO_000300: 9.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

GenotypeQuality
all individuals: 13432
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 338
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2973
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2839
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1911
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3902
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24589
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.25e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.03e-1

FS
type: SiteQuality
SIO_000300: 2.811e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.14e0

QD
type: SiteQuality
SIO_000300: 1.434e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.362452e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e-1

GenotypeQuality
all individuals: 1230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13428
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 213
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23653
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1908
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2968
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.691117677733357e-5
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.221e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

DP
type: SiteQuality
SIO_000300: 2.349426e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

VQSLOD
type: SiteQuality
SIO_000300: -5.05e-2

QD
type: SiteQuality
SIO_000300: 1.501e1

GenotypeQuality
all individuals: 13594
bin: 9.75e1
variant carriers: 343

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21530
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6582
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 302
allele frequency: 4.543403038964946e-3
allele num: 66470
num of homozygotes: 0

Latino
type: Population
allele count: 22
allele frequency: 1.914042108926396e-3
allele num: 11494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.628928898382667e-4
allele num: 6554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.158301158301158e-3
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.2271714922049e-3
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.99e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.532e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 2.320605e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6377
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3783
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2911
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13321
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 407
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504981488727689e-5
allele num: 66446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

FS
type: SiteQuality
SIO_000300: 1.743e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 1.354e1

MQ
type: SiteQuality
SIO_000300: 5.925e1

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

DP
type: SiteQuality
SIO_000300: 2.291185e6

GenotypeQuality
all individuals: 3698
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2620
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2277
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13323
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 1330
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2884
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 2.861531973854634e-4
allele num: 66398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.15e0

QD
type: SiteQuality
SIO_000300: 1.44e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.416e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.267139e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

GenotypeQuality
all individuals: 1242
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3636
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3380
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13308
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 443
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5725
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.015499668295036e-5
allele num: 66324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.906e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.231975e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.75e-1

QD
type: SiteQuality
SIO_000300: 1.224e1

MQ
type: SiteQuality
SIO_000300: 5.899e1

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13306
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 63
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3624
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3534
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5617
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12573
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3439
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509433962264151e-5
allele num: 66250
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.308e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 2.204e0

DP
type: SiteQuality
SIO_000300: 2.223255e6

VQSLOD
type: SiteQuality
SIO_000300: 8.31e-1

GenotypeQuality
all individuals: 1572
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5235
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4042
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8910
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2669
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4477
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2501
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66078
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.118453255017132e-5
allele num: 16344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.381e0

DP
type: SiteQuality
SIO_000300: 2.206528e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.256e0

MQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.622e0

QD
type: SiteQuality
SIO_000300: 3.04e0

FS
type: SiteQuality
SIO_000300: 4.15e0

GenotypeQuality
all individuals: 13302
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1873
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4581
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3649
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6571
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3536
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2811
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2450
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516254245511887e-5
allele num: 65952
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.104e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.68e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.12e0

DP
type: SiteQuality
SIO_000300: 2.203051e6

QD
type: SiteQuality
SIO_000300: 7.62e0

GenotypeQuality
all individuals: 11129
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1524
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3959
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16083
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3077
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2667
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3047
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1655
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2235
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527183872938302e-5
allele num: 65480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.195019204559534e-5
allele num: 16142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6334
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.347e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-1

QD
type: SiteQuality
SIO_000300: 1.157e1

MQ
type: SiteQuality
SIO_000300: 5.936e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

DP
type: SiteQuality
SIO_000300: 1.765977e6

GenotypeQuality
all individuals: 2269
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3248
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11195
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 677
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1580
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1503
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.80126738250308e-5
allele num: 11362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16196
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.939e0

MQRankSum
type: SiteQuality
SIO_000300: 6.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

VQSLOD
type: SiteQuality
SIO_000300: -2.98e-2

QD
type: SiteQuality
SIO_000300: 1.752e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.38e-1

DP
type: SiteQuality
SIO_000300: 1.784968e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.449e0

GenotypeQuality
all individuals: 2042
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1652
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7138
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11242
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19701
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3409
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3399
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519064256418047e-5
allele num: 65830
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.488e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

DP
type: SiteQuality
SIO_000300: 1.809652e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.98e-1

GenotypeQuality
all individuals: 206
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7600
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11298
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4708
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21727
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e-1

DP
type: SiteQuality
SIO_000300: 1.850548e6

FS
type: SiteQuality
SIO_000300: 2.026e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.62e-1

QD
type: SiteQuality
SIO_000300: 1.747e1

GenotypeQuality
all individuals: 651
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2204
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1815
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3799
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11347
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 7802
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4869
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.936483346243222e-4
allele num: 10328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016864271276435e-5
allele num: 66294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

QD
type: SiteQuality
SIO_000300: 1.757e1

FS
type: SiteQuality
SIO_000300: 3.617e0

VQSLOD
type: SiteQuality
SIO_000300: 9.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.872419e6

MQRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.73e-2

GenotypeQuality
all individuals: 22334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3823
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4900
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3835
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11365
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 7864
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16360
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.789717461787865e-4
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66330
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 3.863e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 1.87706e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 1.338e1

MQRankSum
type: SiteQuality
SIO_000300: -1.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e-1

GenotypeQuality
all individuals: 365
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3855
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11389
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7942
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1852
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4979
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3876
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.934235976789168e-4
allele num: 10340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.887587e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.903e0

FS
type: SiteQuality
SIO_000300: 5.56e0

MQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

QD
type: SiteQuality
SIO_000300: 1.155e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

GenotypeQuality
all individuals: 305
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22315
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2252
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3876
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7942
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1852
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11389
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4979
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.01331886940276e-5
allele num: 66372
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.671179883945841e-5
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

DP
type: SiteQuality
SIO_000300: 1.887587e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

FS
type: SiteQuality
SIO_000300: 5.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.903e0

QD
type: SiteQuality
SIO_000300: 1.155e1

MQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

GenotypeQuality
all individuals: 2296
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3935
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5075
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8047
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22368
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093102607847916e-5
allele num: 16412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.923e0

FS
type: SiteQuality
SIO_000300: 5.72e-1

MQ
type: SiteQuality
SIO_000300: 5.884e1

DP
type: SiteQuality
SIO_000300: 1.892257e6

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.103e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.433e-1

GenotypeQuality
all individuals: 342
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3664
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2178
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 3722
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 222
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 20276
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 197
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15488
bin: 9.75e1
variant carriers: 5096

GenotypeQuality
all individuals: 1795
bin: 8.75e1
variant carriers: 12

GenotypeQuality
all individuals: 4704
bin: 7.75e1
variant carriers: 9

GenotypeQuality
all individuals: 171
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 5

Latino
type: Population
allele count: 271
allele frequency: 2.355702364394993e-2
allele num: 11504
num of homozygotes: 3

South Asian
type: Population
allele count: 619
allele frequency: 3.770252162260933e-2
allele num: 16418
num of homozygotes: 11

European (Non-Finnish)
type: Population
allele count: 3322
allele frequency: 4.994136925343516e-2
allele num: 66518
num of homozygotes: 74

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 854
allele frequency: 8.232118758434548e-2
allele num: 10374
num of homozygotes: 38

Other
type: Population
allele count: 41
allele frequency: 4.555555555555556e-2
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 186
allele frequency: 2.864182322143517e-2
allele num: 6494
num of homozygotes: 4

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

FS
type: SiteQuality
SIO_000300: 1.373e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.431e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.248e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

DP
type: SiteQuality
SIO_000300: 2.002495e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

GenotypeQuality
all individuals: 2004
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3898
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20678
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7761
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2537
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4059
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13218
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5069
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.605523710265763e-4
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.71e-1

DP
type: SiteQuality
SIO_000300: 1.968203e6

VQSLOD
type: SiteQuality
SIO_000300: 6.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.627e0

FS
type: SiteQuality
SIO_000300: 7.38e-1

QD
type: SiteQuality
SIO_000300: 9.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5244
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20782
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4175
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13276
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 4035
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.649818519962804e-4
allele num: 66674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.985223e6

FS
type: SiteQuality
SIO_000300: 5.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.458e0

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.32e-2

QD
type: SiteQuality
SIO_000300: 1.198e1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7981
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13277
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2072
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5247
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20802
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.325259515570934e-4
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.91e-1

FS
type: SiteQuality
SIO_000300: 3.01e0

QD
type: SiteQuality
SIO_000300: 1.416e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.82e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 1.985796e6

GenotypeQuality
all individuals: 2605
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2081
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13290
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8017
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4065
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.498560460652591e-5
allele num: 66688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

FS
type: SiteQuality
SIO_000300: 5.32e-1

QD
type: SiteQuality
SIO_000300: 1.628e1

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.498e0

DP
type: SiteQuality
SIO_000300: 1.989218e6

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2607
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5287
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20741
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13288
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4216
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

QD
type: SiteQuality
SIO_000300: 1.185e1

MQRankSum
type: SiteQuality
SIO_000300: 6.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-2

DP
type: SiteQuality
SIO_000300: 1.990193e6

FS
type: SiteQuality
SIO_000300: 4.061e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.09e-1

GenotypeQuality
all individuals: 4088
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13310
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8050
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4230
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5320
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.53e-1

QD
type: SiteQuality
SIO_000300: 1.216e1

MQ
type: SiteQuality
SIO_000300: 5.917e1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.482e0

FS
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 1.993363e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.09e-1

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4085
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2626
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20733
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2094
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13308
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.224e0

VQSLOD
type: SiteQuality
SIO_000300: -7.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

QD
type: SiteQuality
SIO_000300: 1.532e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 7.657e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.993605e6

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4081
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4237
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2628
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5325
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8050
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 3.297658662349732e-4
allele num: 66714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.07e-1

QD
type: SiteQuality
SIO_000300: 1.276e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.052e0

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

DP
type: SiteQuality
SIO_000300: 1.995568e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e-1

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2630
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5332
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4241
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13337
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4090
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.666e0

DP
type: SiteQuality
SIO_000300: 1.995657e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 9.275e0

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.36e1

VQSLOD
type: SiteQuality
SIO_000300: -4.71e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.38e-1

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13342
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8051
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5330
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4100
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4250
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20691
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.623208506703652e-4
allele num: 8652
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 4.746e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.124e0

VQSLOD
type: SiteQuality
SIO_000300: 5.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

QD
type: SiteQuality
SIO_000300: 1.286e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

DP
type: SiteQuality
SIO_000300: 1.996582e6

MQ
type: SiteQuality
SIO_000300: 5.922e1

GenotypeQuality
all individuals: 13346
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2637
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20728
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5340
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4250
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8059
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4108
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.944e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.79e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.191e0

FS
type: SiteQuality
SIO_000300: 8.778e0

VQSLOD
type: SiteQuality
SIO_000300: -5.2e-2

DP
type: SiteQuality
SIO_000300: 1.997506e6

MQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20609
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2623
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5313
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8026
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4082
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13599
bin: 9.75e1
variant carriers: 332

African
type: Population
allele count: 7
allele frequency: 6.728181468665898e-4
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 302
allele frequency: 4.526514583770497e-3
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.451241671714113e-4
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.785467128027682e-4
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.566585956416465e-4
allele num: 6608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.49e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

DP
type: SiteQuality
SIO_000300: 2.014463e6

MQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.671e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: 5.85e0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5323
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20694
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13524
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4249
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4094
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2639
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.005638e6

FS
type: SiteQuality
SIO_000300: 4.477e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.745e0

QD
type: SiteQuality
SIO_000300: 1.32e1

MQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.348e-1

MQ
type: SiteQuality
SIO_000300: 5.909e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.202e0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8048
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2641
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13525
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5323
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4094
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.085e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.996e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.22e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.24e-1

QD
type: SiteQuality
SIO_000300: 1.186e1

DP
type: SiteQuality
SIO_000300: 2.005675e6

FS
type: SiteQuality
SIO_000300: 5.473e0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4250
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4095
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5325
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8048
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 2.023e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.205e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.503e-1

MQ
type: SiteQuality
SIO_000300: 5.813e1

DP
type: SiteQuality
SIO_000300: 2.005768e6

QD
type: SiteQuality
SIO_000300: 1.449e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5324
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13525
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8048
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20716
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4251
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4093
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.647e0

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e0

FS
type: SiteQuality
SIO_000300: 1.776e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.427e0

DP
type: SiteQuality
SIO_000300: 2.005822e6

QD
type: SiteQuality
SIO_000300: 1.125e1

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13527
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4093
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20714
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8046
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5324
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 2.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 2.005907e6

QD
type: SiteQuality
SIO_000300: 1.229e1

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5322
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2639
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13533
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4094
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4252
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8044
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20714
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.039981511439797e-3
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.262e1

DP
type: SiteQuality
SIO_000300: 2.006777e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.751e0

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

MQ
type: SiteQuality
SIO_000300: 5.912e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

GenotypeQuality
all individuals: 4252
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20712
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13527
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4095
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8046
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.105e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.677e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

DP
type: SiteQuality
SIO_000300: 2.006061e6

FS
type: SiteQuality
SIO_000300: 6.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2094
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2632
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20596
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7998
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4071
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5308
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 319
allele frequency: 3.06553911205074e-2
allele num: 10406
num of homozygotes: 8

Latino
type: Population
allele count: 4
allele frequency: 3.455425017277125e-4
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.198681450404555e-4
allele num: 66740
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

DP
type: SiteQuality
SIO_000300: 2.035026e6

VQSLOD
type: SiteQuality
SIO_000300: 4.5e0

QD
type: SiteQuality
SIO_000300: 1.26e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.63e-2

GenotypeQuality
all individuals: 4237
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20607
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5311
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2650
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8000
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4074
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13716
bin: 9.75e1
variant carriers: 11

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.993407252022775e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.559721802237678e-4
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.015617e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.34e-1

QD
type: SiteQuality
SIO_000300: 1.216e1

GenotypeQuality
all individuals: 13716
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20607
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2650
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8000
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5311
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

QD
type: SiteQuality
SIO_000300: 1.216e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.015617e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.97e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 6.18e-1

GenotypeQuality
all individuals: 5311
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2650
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13716
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20607
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8000
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 2.015617e6

QD
type: SiteQuality
SIO_000300: 1.216e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.34e-1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2650
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7999
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4075
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13712
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495055439017081e-5
allele num: 66740
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.983e1

QD
type: SiteQuality
SIO_000300: 1.403e1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 2.015198e6

VQSLOD
type: SiteQuality
SIO_000300: -3.442e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.45e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.82e-1

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20612
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5310
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13712
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7996
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2650
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.311e1

FS
type: SiteQuality
SIO_000300: 5.439e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.199e0

VQSLOD
type: SiteQuality
SIO_000300: -8.025e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.096e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e0

MQRankSum
type: SiteQuality
SIO_000300: -1.012e0

DP
type: SiteQuality
SIO_000300: 2.014974e6