3-196454939-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196454939
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196454939
    reference: chr 3
allele count: 959
allele frequency: 7.902760609806346e-3
allele num: 121350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.341C>T
  hgvsp: ENSP00000416446.1:p.Pro114Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.341C>T
  hgvsp: ENSP00000317301.4:p.Pro114Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.341C>T
  hgvsp: ENSP00000409073.1:p.Pro114Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000390804
  ensembl transcript: ENST00000451319
  gene symbol: PIGX
  hgvsc: ENST00000451319.1:c.341C>T
  hgvsp: ENSP00000390804.1:p.Pro114Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.464C>T
  hgvsp: ENSP00000296333.5:p.Pro155Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.140C>T
  hgvsp: ENSP00000443269.1:p.Pro47Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*218C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.464C>T
  hgvsp: ENSP00000376192.3:p.Pro155Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*425C>T
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 9.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 24927
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 24883
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro155Leu
num of homozygotes: 32
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

3-196454940-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196454940
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196454940
    reference: chr 3
allele count: 20
allele frequency: 1.648152421135907e-4
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.342G>A
  hgvsp: ENST00000421265.1:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*219G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000390804
  ensembl transcript: ENST00000451319
  gene symbol: PIGX
  hgvsc: ENST00000451319.1:c.342G>A
  hgvsp: ENST00000451319.1:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.342G>A
  hgvsp: ENST00000314118.4:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*426G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.465G>A
  hgvsp: ENST00000296333.5:c.465G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.141G>A
  hgvsp: ENST00000541663.1:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.465G>A
  hgvsp: ENST00000392391.3:c.465G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.342G>A
  hgvsp: ENST00000426755.1:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro155Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

3-196454950-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196454950
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196454950
    reference: chr 3
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*436G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.475G>A
  hgvsp: ENSP00000376192.3:p.Asp159Asn
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.352G>A
  hgvsp: ENSP00000416446.1:p.Asp118Asn
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*229G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000390804
  ensembl transcript: ENST00000451319
  gene symbol: PIGX
  hgvsc: ENST00000451319.1:c.352G>A
  hgvsp: ENSP00000390804.1:p.Asp118Asn
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.475G>A
  hgvsp: ENSP00000296333.5:p.Asp159Asn
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.352G>A
  hgvsp: ENSP00000317301.4:p.Asp118Asn
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.352G>A
  hgvsp: ENSP00000409073.1:p.Asp118Asn
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.151G>A
  hgvsp: ENSP00000443269.1:p.Asp51Asn
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6374
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp159Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

3-196454956-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196454956
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196454956
    reference: chr 3
allele count: 2
allele frequency: 1.649130908011478e-5
allele num: 121276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.157G>A
  hgvsp: ENSP00000443269.1:p.Glu53Lys
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.481G>A
  hgvsp: ENSP00000296333.5:p.Glu161Lys
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.358G>A
  hgvsp: ENSP00000416446.1:p.Glu120Lys
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*442G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*235G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000390804
  ensembl transcript: ENST00000451319
  gene symbol: PIGX
  hgvsc: ENST00000451319.1:c.358G>A
  hgvsp: ENSP00000390804.1:p.Glu120Lys
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.358G>A
  hgvsp: ENSP00000409073.1:p.Glu120Lys
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.358G>A
  hgvsp: ENSP00000317301.4:p.Glu120Lys
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.481G>A
  hgvsp: ENSP00000376192.3:p.Glu161Lys
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu161Lys
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

3-196454963-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196454963
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196454963
    reference: chr 3
allele count: 2
allele frequency: 1.650682557237418e-5
allele num: 121162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.365C>T
  hgvsp: ENSP00000409073.1:p.Ser122Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.365C>T
  hgvsp: ENSP00000416446.1:p.Ser122Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*242C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000390804
  ensembl transcript: ENST00000451319
  gene symbol: PIGX
  hgvsc: ENST00000451319.1:c.365C>T
  hgvsp: ENSP00000390804.1:p.Ser122Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*449C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.488C>T
  hgvsp: ENSP00000376192.3:p.Ser163Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.488C>T
  hgvsp: ENSP00000296333.5:p.Ser163Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.365C>T
  hgvsp: ENSP00000317301.4:p.Ser122Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.164C>T
  hgvsp: ENSP00000443269.1:p.Ser55Leu
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6664
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser163Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-196454973-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196454973
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196454974
    reference: chr 3
allele count: 6
allele frequency: 4.96294335627316e-5
allele num: 120896
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*461dupA
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*254dupA
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.377dupA
  hgvsp: ENSP00000416446.1:p.Asn126LysfsTer2
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.377dupA
  hgvsp: ENSP00000317301.4:p.Asn126LysfsTer2
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.500dupA
  hgvsp: ENSP00000296333.5:p.Asn167LysfsTer2
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000390804
  ensembl transcript: ENST00000451319
  gene symbol: PIGX
  hgvsc: ENST00000451319.1:c.377dupA
  hgvsp: ENSP00000390804.1:p.Asn126LysfsTer2
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.176dupA
  hgvsp: ENSP00000443269.1:p.Asn59LysfsTer2
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.377dupA
  hgvsp: ENSP00000409073.1:p.Asn126LysfsTer2
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.500dupA
  hgvsp: ENSP00000376192.3:p.Asn167LysfsTer2
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6662
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6333
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn167LysfsTer2
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

3-196454974-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196454974
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196454974
    reference: chr 3
allele count: 24
allele frequency: 1.986426088395961e-4
allele num: 120820
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.499A>G
  hgvsp: ENSP00000296333.5:p.Asn167Asp
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.376A>G
  hgvsp: ENSP00000317301.4:p.Asn126Asp
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.376A>G
  hgvsp: ENSP00000409073.1:p.Asn126Asp
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.175A>G
  hgvsp: ENSP00000443269.1:p.Asn59Asp
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.499A>G
  hgvsp: ENSP00000376192.3:p.Asn167Asp
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*460A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000390804
  ensembl transcript: ENST00000451319
  gene symbol: PIGX
  hgvsc: ENST00000451319.1:c.376A>G
  hgvsp: ENSP00000390804.1:p.Asn126Asp
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.376A>G
  hgvsp: ENSP00000416446.1:p.Asn126Asp
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*253A>G
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25436
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2612
  bin: 9.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn167Asp
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/3-196454978-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196454978
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196454977
    reference: chr 3
allele count: 2
allele frequency: 1.657687525901368e-5
allele num: 120650
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000390804
  ensembl transcript: ENST00000451319
  gene symbol: PIGX
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.182delC
  hgvsp: ENSP00000443269.1:p.Pro61GlnfsTer4
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*467delC
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.506delC
  hgvsp: ENSP00000296333.5:p.Pro169GlnfsTer4
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.383delC
  hgvsp: ENSP00000409073.1:p.Pro128GlnfsTer4
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.383delC
  hgvsp: ENSP00000317301.4:p.Pro128GlnfsTer4
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.383delC
  hgvsp: ENSP00000416446.1:p.Pro128GlnfsTer4
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.506delC
  hgvsp: ENSP00000376192.3:p.Pro169GlnfsTer4
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*260delC
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro169GlnfsTer4
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: AC
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

3-196454979-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196454979
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196454979
    reference: chr 3
allele count: 2
allele frequency: 1.659090154959021e-5
allele num: 120548
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.381C>T
  hgvsp: ENST00000314118.4:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.180C>T
  hgvsp: ENST00000541663.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000390804
  ensembl transcript: ENST00000451319
  gene symbol: PIGX
  hgvsc: ENST00000451319.1:c.381C>T
  hgvsp: ENST00000451319.1:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.504C>T
  hgvsp: ENST00000296333.5:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.381C>T
  hgvsp: ENST00000426755.1:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*258C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*465C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.381C>T
  hgvsp: ENST00000421265.1:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.504C>T
  hgvsp: ENST00000392391.3:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn168Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

3-196454988-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196454988
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196454988
    reference: chr 3
allele count: 1
allele frequency: 8.361903169161301e-6
allele num: 119590
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.513G>A
  hgvsp: ENST00000296333.5:c.513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.390G>A
  hgvsp: ENST00000426755.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.513G>A
  hgvsp: ENST00000392391.3:c.513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*267G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.390G>A
  hgvsp: ENST00000421265.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.390G>A
  hgvsp: ENST00000314118.4:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.189G>A
  hgvsp: ENST00000541663.1:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*474G>A
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2584
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46669
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu171Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

3-196455008-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455008
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455008
    reference: chr 3
allele count: 2
allele frequency: 1.821692716872518e-5
allele num: 109788
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.532+1G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+1G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+1G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+1G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*286+1G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+1G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.208+1G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.410G>A
  hgvsp: ENSP00000416446.1:p.Gly137Asp
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18420
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20878
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4470
  bin: 6.75e1
  variant carriers: 0
hgvs: c.532+1G>A
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD

3-196455023-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455023
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455024
    reference: chr 3
allele count: 2
allele frequency: 2.150491387281994e-5
allele num: 93002
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*286+20dupT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.429dupT
  hgvsp: ENSP00000416446.1:p.Leu144SerfsTer4
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+20dupT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+20dupT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.532+20dupT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+20dupT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.208+20dupT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+20dupT
  variant of: http://identifiers.org/hgnc/26046
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12720
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24836
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22458
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Leu144SerfsTer4
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

3-196455025-T-TAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455025
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455027
    reference: chr 3
allele count: 1
allele frequency: 1.117618132236577e-5
allele num: 89476
alternate allele: TAG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+18_409+19insAG
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: stop_gained
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.427_428insAG
  hgvsp: ENSP00000416446.1:p.Phe143Ter
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.208+18_208+19insAG
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*286+18_*286+19insAG
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.532+18_532+19insAG
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+18_409+19insAG
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+18_*493+19insAG
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+18_532+19insAG
  variant of: http://identifiers.org/hgnc/26046
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19447
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27171
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Phe143Ter
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

3-196455035-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455035
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455035
    reference: chr 3
allele count: 1
allele frequency: 1.24340992738486e-5
allele num: 80424
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+28T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.532+28T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+28T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.208+28T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*286+28T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.437T>C
  hgvsp: ENSP00000416446.1:p.Val146Ala
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+28T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+28T>C
  variant of: http://identifiers.org/hgnc/26046
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18046
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31378
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val146Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

3-196455040-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455040
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455040
    reference: chr 3
allele count: 2
allele frequency: 2.697162584960622e-5
allele num: 74152
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+33A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.208+33A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.442A>G
  hgvsp: ENSP00000416446.1:p.Thr148Ala
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+33A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+33A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*286+33A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+33A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.532+33A>G
  variant of: http://identifiers.org/hgnc/26046
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr148Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum

3-196455044-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455044
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455044
    reference: chr 3
allele count: 1
allele frequency: 1.416912264792564e-5
allele num: 70576
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*286+37C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+37C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+37C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.208+37C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.446C>G
  hgvsp: ENSP00000416446.1:p.Ser149Ter
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+37C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+37C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.532+37C>G
  variant of: http://identifiers.org/hgnc/26046
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4415
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4072
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32229
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser149Ter
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

3-196455053-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455053
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455053
    reference: chr 3
allele count: 5
allele frequency: 8.116092588384248e-5
allele num: 61606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*286+46G>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+46G>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+46G>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+46G>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+46G>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.*2G>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.532+46G>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.208+46G>T
  variant of: http://identifiers.org/hgnc/26046
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21680
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16121
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8070
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 30529
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-196455062-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455062
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455062
    reference: chr 3
allele count: 3
allele frequency: 5.662514156285391e-5
allele num: 52980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*286+55G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+55G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+55G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+55G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.532+55G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+55G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.208+55G>A
  variant of: http://identifiers.org/hgnc/26046
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13939
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22209
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10755
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11164
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2559
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-196455066-GTCC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455066
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455063
    reference: chr 3
allele count: 2
allele frequency: 3.96620790861857e-5
allele num: 50426
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.*20_*22delCCT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*286+64_*286+66delCCT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+64_409+66delCCT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.532+64_532+66delCCT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.208+64_208+66delCCT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+64_*493+66delCCT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+64_409+66delCCT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+64_532+66delCCT
  variant of: http://identifiers.org/hgnc/26046
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21920
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13249
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: GTCC
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

3-196455074-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455074
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455074
    reference: chr 3
allele count: 1
allele frequency: 2.284043670914988e-5
allele num: 43782
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+67T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.532+67T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+67T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.*23T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+67T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+67T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.208+67T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*286+67T>C
  variant of: http://identifiers.org/hgnc/26046
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11178
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16069
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3572
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15994
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4152
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21173
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ

3-196455087-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455087
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455087
    reference: chr 3
allele count: 1
allele frequency: 2.718868950516585e-5
allele num: 36780
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+80C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.208+80C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+80C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+80C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.532+80C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.*36C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+80C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*286+80C>T
  variant of: http://identifiers.org/hgnc/26046
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21975
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4563
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2007
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2399
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17728
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/3-196455091-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455091
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455092
    reference: chr 3
allele count: 1
allele frequency: 2.794232703699564e-5
allele num: 35788
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.*42dupA
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*286+86dupA
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.532+86dupA
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+86dupA
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.208+86dupA
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+86dupA
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+86dupA
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+86dupA
  variant of: http://identifiers.org/hgnc/26046
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4750
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13760
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2713
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17789
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

3-196455097-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455097
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455097
    reference: chr 3
allele count: 239
allele frequency: 6.970368642090528e-3
allele num: 34288
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.532+90C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000416446
  ensembl transcript: ENST00000421265
  gene symbol: PIGX
  hgvsc: ENST00000421265.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.208+90C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+90C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+90C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+90C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*286+90C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+90C>T
  variant of: http://identifiers.org/hgnc/26046
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22757
  bin: 7.5e0
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 1.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7447
  bin: 1.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 18282
  bin: 2.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 16705
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 2263
  bin: 6.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2353
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 6959
  bin: 1.75e1
  variant carriers: 7
num of homozygotes: 2
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

3-196455523-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455523
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455523
    reference: chr 3
allele count: 1
allele frequency: 8.507886811073865e-6
allele num: 117538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+516C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*287-50C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+516C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.533-50C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+516C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+516C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.209-50C>T
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16680
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3018
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

3-196455525-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455525
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455525
    reference: chr 3
allele count: 1
allele frequency: 8.502822937215155e-6
allele num: 117608
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+518A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*287-48A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+518A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.209-48A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+518A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.533-48A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+518A>G
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4255
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8900
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3034
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6678
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

3-196455526-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455526
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455526
    reference: chr 3
allele count: 4
allele frequency: 3.40008840229846e-5
allele num: 117644
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.533-47A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+519A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+519A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+519A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.209-47A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*287-47A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+519A>G
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10745
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3278
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5078
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6698
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

3-196455536-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455536
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455536
    reference: chr 3
allele count: 1
allele frequency: 8.49689863199932e-6
allele num: 117690
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+529T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.209-37T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+529T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+529T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*287-37T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.533-37T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+529T>C
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11101
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4220
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6852
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3052
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

3-196455544-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455544
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455544
    reference: chr 3
allele count: 1
allele frequency: 8.493434575073469e-6
allele num: 117738
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+537A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.209-29A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*287-29A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+537A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+537A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.533-29A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+537A>G
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4258
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16697
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3062
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

3-196455550-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455550
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455550
    reference: chr 3
allele count: 5
allele frequency: 4.244986670741854e-5
allele num: 117786
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+543C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*287-23C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.533-23C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+543C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.209-23C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+543C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+543C>G
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11323
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7010
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4247
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16699
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 16899
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6899
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/3-196455564-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455564
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455564
    reference: chr 3
allele count: 1
allele frequency: 8.48219587086705e-6
allele num: 117894
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.533-9A>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+557A>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+557A>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+557A>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*287-9A>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.209-9A>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+557A>C
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7016
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6940
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3063
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16698
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3363
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2054
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

3-196455569-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455569
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455569
    reference: chr 3
allele count: 3
allele frequency: 2.5443134594182e-5
allele num: 117910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*287-4G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+562G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.209-4G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+562G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+562G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+562G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.533-4G>A
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16699
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3063
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4260
  bin: 8.25e1
  variant carriers: 0
hgvs: c.533-4G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

3-196455574-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455574
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455574
    reference: chr 3
allele count: 2
allele frequency: 1.695921309251251e-5
allele num: 117930
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*288T>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+567T>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+567T>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.534T>G
  hgvsp: ENST00000296333.5:c.534T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+567T>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.210T>G
  hgvsp: ENST00000541663.1:c.210T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+567T>G
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11382
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17335
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3358
  bin: 7.25e1
  variant carriers: 0
hgvs: c.534T>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum

3-196455588-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455588
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455588
    reference: chr 3
allele count: 1
allele frequency: 8.47860001356576e-6
allele num: 117944
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*302T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+581T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+581T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+581T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+581T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.548T>C
  hgvsp: ENSP00000296333.5:p.Met183Thr
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.224T>C
  hgvsp: ENSP00000443269.1:p.Met75Thr
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11384
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4262
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5189
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17357
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3360
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met183Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

3-196455599-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455599
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455599
    reference: chr 3
allele count: 4
allele frequency: 3.391324990673856e-5
allele num: 117948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+592C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.559C>T
  hgvsp: ENSP00000296333.5:p.Arg187Trp
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+592C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+592C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*313C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.235C>T
  hgvsp: ENSP00000443269.1:p.Arg79Trp
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+592C>T
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17343
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg187Trp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum

3-196455600-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455600
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455600
    reference: chr 3
allele count: 30
allele frequency: 2.543493743005392e-4
allele num: 117948
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.560G>A
  hgvsp: ENSP00000296333.5:p.Arg187Gln
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*314G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+593G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+593G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+593G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.236G>A
  hgvsp: ENSP00000443269.1:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+593G>A
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4259
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg187Gln
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum

3-196455606-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455606
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455607
    reference: chr 3
allele count: 1
allele frequency: 8.477881207928515e-6
allele num: 117954
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+601dupT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.568dupT
  hgvsp: ENSP00000296333.5:p.Ser190PhefsTer3
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+601dupT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.244dupT
  hgvsp: ENSP00000443269.1:p.Ser82PhefsTer3
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*322dupT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+601dupT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+601dupT
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17352
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3058
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser190PhefsTer3
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

3-196455620-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455620
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455620
    reference: chr 3
allele count: 2
allele frequency: 1.695662495336928e-5
allele num: 117948
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+613A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*334A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+613A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.256A>G
  hgvsp: ENSP00000443269.1:p.Thr86Ala
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+613A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.580A>G
  hgvsp: ENSP00000296333.5:p.Thr194Ala
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+613A>G
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16698
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17337
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3057
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6965
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr194Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

3-196455643-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455643
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455643
    reference: chr 3
allele count: 1
allele frequency: 8.481620328747603e-6
allele num: 117902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+636C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*340+17C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+636C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.262+17C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.586+17C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+636C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+636C>T
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3351
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3056
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6938
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

3-196455648-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455648
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455648
    reference: chr 3
allele count: 1
allele frequency: 8.481764206955047e-6
allele num: 117900
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.586+22C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+641C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.262+22C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*340+22C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+641C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+641C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+641C>T
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6930
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

3-196455655-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455655
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455655
    reference: chr 3
allele count: 16
allele frequency: 1.357197387395029e-4
allele num: 117890
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*340+29C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+648C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+648C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+648C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.586+29C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+648C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.262+29C>G
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11413
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13934
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10498
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7022
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16549
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

3-196455664-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196455664
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196455664
    reference: chr 3
allele count: 2
allele frequency: 1.696784593195894e-5
allele num: 117870
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.262+38T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.409+657T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.409+657T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.532+657T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.586+38T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*340+38T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*493+657T>C
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3307
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16698
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

3-196457818-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457818
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457818
    reference: chr 3
allele count: 1
allele frequency: 9.830521804097361e-6
allele num: 101724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.533-45T>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*494-45T>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*341-45T>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.587-45T>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.410-45T>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.263-45T>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.410-45T>G
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11634
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8687
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7857
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2279
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4979
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3925
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/3-196457820-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457820
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457819
    reference: chr 3
allele count: 2
allele frequency: 1.973242827262323e-5
allele num: 101356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*494-40delA
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.410-40delA
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.410-40delA
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.587-40delA
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.533-40delA
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.263-40delA
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*341-40delA
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8640
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17043
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10089
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14646
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4289
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6826
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: CA
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

3-196457824-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457824
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457824
    reference: chr 3
allele count: 1
allele frequency: 9.761430635273906e-6
allele num: 102444
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.410-39T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*494-39T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.533-39T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.587-39T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*341-39T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.410-39T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.263-39T>C
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7375
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6305
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/3-196457826-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457826
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457826
    reference: chr 3
allele count: 44
allele frequency: 4.291594327292589e-4
allele num: 102526
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.587-37C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*494-37C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.410-37C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.533-37C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.410-37C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*341-37C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.263-37C>A
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5202
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15384
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18625
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8485
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3781
  bin: 9.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5828
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20625
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-196457829-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457829
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457830
    reference: chr 3
allele count: 1
allele frequency: 9.693679720822024e-6
allele num: 103160
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.533-30dupT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.410-30dupT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*494-30dupT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.587-30dupT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*341-30dupT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.410-30dupT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.263-30dupT
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13806
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3531
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4871
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8479
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6244
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS

3-196457836-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457836
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457836
    reference: chr 3
allele count: 3
allele frequency: 2.859921066178573e-5
allele num: 104898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*341-27G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.533-27G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.410-27G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*494-27G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.263-27G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.587-27G>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.410-27G>A
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27421
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9909
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2553
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3746
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 30199
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4666
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7896
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2850
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-196457838-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457838
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457838
    reference: chr 3
allele count: 2
allele frequency: 1.888324489680307e-5
allele num: 105914
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.587-25C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*341-25C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.410-25C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.410-25C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*494-25C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.533-25C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.263-25C>A
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32410
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7541
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/3-196457841-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457841
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457841
    reference: chr 3
allele count: 4
allele frequency: 3.731900283624421e-5
allele num: 107184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*341-22C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.533-22C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.410-22C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.587-22C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.263-22C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*494-22C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.410-22C>A
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31105
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33651
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-196457846-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457846
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457845
    reference: chr 3
allele count: 2
allele frequency: 1.82229025439172e-5
allele num: 109752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.410-16delC
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.587-16delC
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*341-16delC
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.533-16delC
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*494-16delC
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.410-16delC
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.263-16delC
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5878
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2367
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: TC
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

3-196457850-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457850
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457850
    reference: chr 3
allele count: 3
allele frequency: 2.682451402922084e-5
allele num: 111838
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.410-13C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.410-13C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*341-13C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.587-13C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.263-13C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*494-13C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.533-13C>T
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8497
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40605
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3749
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3159
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

3-196457850-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457850
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457850
    reference: chr 3
allele count: 1
allele frequency: 8.941504676406945e-6
allele num: 111838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.263-13C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*494-13C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.587-13C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*341-13C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.410-13C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.533-13C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.410-13C>G
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3749
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4817
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

3-196457866-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457866
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457866
    reference: chr 3
allele count: 2
allele frequency: 1.700015300137701e-5
allele num: 117646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.413T>C
  hgvsp: ENSP00000409073.1:p.Phe138Ser
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*497T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.590T>C
  hgvsp: ENSP00000296333.5:p.Phe197Ser
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.413T>C
  hgvsp: ENSP00000317301.4:p.Phe138Ser
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*344T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.536T>C
  hgvsp: ENSP00000376192.3:p.Phe179Ser
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.266T>C
  hgvsp: ENSP00000443269.1:p.Phe89Ser
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40231
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46841
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3757
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Phe197Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

3-196457869-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457869
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457869
    reference: chr 3
allele count: 1
allele frequency: 8.457088731774973e-6
allele num: 118244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.416C>T
  hgvsp: ENSP00000409073.1:p.Pro139Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.539C>T
  hgvsp: ENSP00000376192.3:p.Pro180Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.269C>T
  hgvsp: ENSP00000443269.1:p.Pro90Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*500C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.593C>T
  hgvsp: ENSP00000296333.5:p.Pro198Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.416C>T
  hgvsp: ENSP00000317301.4:p.Pro139Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*347C>T
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47079
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro198Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

3-196457870-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457870
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457870
    reference: chr 3
allele count: 3011
allele frequency: 2.535450840378591e-2
allele num: 118756
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.417G>C
  hgvsp: ENST00000314118.4:c.417G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*348G>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.270G>C
  hgvsp: ENST00000541663.1:c.270G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.417G>C
  hgvsp: ENST00000426755.1:c.417G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.594G>C
  hgvsp: ENST00000296333.5:c.594G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*501G>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.540G>C
  hgvsp: ENST00000392391.3:c.540G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 3.25e1
  variant carriers: 519
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.25e1
  variant carriers: 397
genotype depth: GenotypeDepth
  all individuals: 10767
  bin: 2.75e1
  variant carriers: 356
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.75e1
  variant carriers: 256
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 3.75e1
  variant carriers: 507
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 9.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.75e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 38575
  bin: 2.25e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 9.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 2.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 7.75e1
  variant carriers: 12
hgvs: p.Pro198Pro
num of homozygotes: 206
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

3-196457881-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457881
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457881
    reference: chr 3
allele count: 1
allele frequency: 8.337502084375522e-6
allele num: 119940
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.428G>T
  hgvsp: ENSP00000409073.1:p.Cys143Phe
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.605G>T
  hgvsp: ENSP00000296333.5:p.Cys202Phe
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*359G>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.428G>T
  hgvsp: ENSP00000317301.4:p.Cys143Phe
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.281G>T
  hgvsp: ENSP00000443269.1:p.Cys94Phe
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.551G>T
  hgvsp: ENSP00000376192.3:p.Cys184Phe
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*512G>T
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys202Phe
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP

3-196457888-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457888
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457888
    reference: chr 3
allele count: 1
allele frequency: 8.31255195344971e-6
allele num: 120300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.288T>A
  hgvsp: ENST00000541663.1:c.288T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*366T>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.612T>A
  hgvsp: ENST00000296333.5:c.612T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.558T>A
  hgvsp: ENST00000392391.3:c.558T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.435T>A
  hgvsp: ENST00000426755.1:c.435T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*519T>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.435T>A
  hgvsp: ENST00000314118.4:c.435T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4135
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala204Ala
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-196457891-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457891
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457891
    reference: chr 3
allele count: 1
allele frequency: 8.304130474498016e-6
allele num: 120422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.438C>A
  hgvsp: ENSP00000409073.1:p.His146Gln
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.438C>A
  hgvsp: ENSP00000317301.4:p.His146Gln
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*369C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.615C>A
  hgvsp: ENSP00000296333.5:p.His205Gln
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.291C>A
  hgvsp: ENSP00000443269.1:p.His97Gln
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*522C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.561C>A
  hgvsp: ENSP00000376192.3:p.His187Gln
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4144
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His205Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

3-196457899-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457899
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457899
    reference: chr 3
allele count: 181
allele frequency: 1.501476590237914e-3
allele num: 120548
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.299T>C
  hgvsp: ENSP00000443269.1:p.Val100Ala
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*377T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.569T>C
  hgvsp: ENSP00000376192.3:p.Val190Ala
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.446T>C
  hgvsp: ENSP00000317301.4:p.Val149Ala
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.623T>C
  hgvsp: ENSP00000296333.5:p.Val208Ala
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.446T>C
  hgvsp: ENSP00000409073.1:p.Val149Ala
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*530T>C
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12816
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 39147
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48715
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val208Ala
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-196457905-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457905
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457905
    reference: chr 3
allele count: 7
allele frequency: 5.8168522519528e-5
allele num: 120340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.452C>G
  hgvsp: ENSP00000317301.4:p.Ala151Gly
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*536C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.452C>G
  hgvsp: ENSP00000409073.1:p.Ala151Gly
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*383C>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.305C>G
  hgvsp: ENSP00000443269.1:p.Ala102Gly
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.575C>G
  hgvsp: ENSP00000376192.3:p.Ala192Gly
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.629C>G
  hgvsp: ENSP00000296333.5:p.Ala210Gly
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13001
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48797
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4110
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala210Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-196457908-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457908
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457908
    reference: chr 3
allele count: 2
allele frequency: 1.659035105182826e-5
allele num: 120552
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.455C>T
  hgvsp: ENSP00000317301.4:p.Pro152Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.632C>T
  hgvsp: ENSP00000296333.5:p.Pro211Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*386C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.455C>T
  hgvsp: ENSP00000409073.1:p.Pro152Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*539C>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.308C>T
  hgvsp: ENSP00000443269.1:p.Pro103Leu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.578C>T
  hgvsp: ENSP00000376192.3:p.Pro193Leu
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro211Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

3-196457910-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457910
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457911
    reference: chr 3
allele count: 1
allele frequency: 8.295726041943191e-6
allele num: 120544
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*389dupG
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.458dupG
  hgvsp: ENSP00000409073.1:p.Cys153TrpfsTer6
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.458dupG
  hgvsp: ENSP00000317301.4:p.Cys153TrpfsTer6
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.311dupG
  hgvsp: ENSP00000443269.1:p.Cys104TrpfsTer6
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*542dupG
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.635dupG
  hgvsp: ENSP00000296333.5:p.Cys212TrpfsTer6
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.581dupG
  hgvsp: ENSP00000376192.3:p.Cys194TrpfsTer6
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Cys212TrpfsTer6
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

3-196457912-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457912
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457912
    reference: chr 3
allele count: 1
allele frequency: 8.295588406085643e-6
allele num: 120546
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.636T>C
  hgvsp: ENST00000296333.5:c.636T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.459T>C
  hgvsp: ENST00000426755.1:c.459T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*390T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.312T>C
  hgvsp: ENST00000541663.1:c.312T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.582T>C
  hgvsp: ENST00000392391.3:c.582T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*543T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.459T>C
  hgvsp: ENST00000314118.4:c.459T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38959
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49024
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Cys212Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

3-196457916-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457916
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457916
    reference: chr 3
allele count: 4
allele frequency: 3.318400530944085e-5
allele num: 120540
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*547T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*394T>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.463T>C
  hgvsp: ENST00000426755.1:c.463T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.640T>C
  hgvsp: ENST00000296333.5:c.640T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.463T>C
  hgvsp: ENST00000314118.4:c.463T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.316T>C
  hgvsp: ENST00000541663.1:c.316T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.586T>C
  hgvsp: ENST00000392391.3:c.586T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49057
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu214Leu
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

3-196457933-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457933
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457934
    reference: chr 3
allele count: 1
allele frequency: 8.334166750008334e-6
allele num: 119988
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.481dupT
  hgvsp: ENSP00000409073.1:p.Cys161LeufsTer9
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.658dupT
  hgvsp: ENSP00000296333.5:p.Cys220LeufsTer9
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*565dupT
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.481dupT
  hgvsp: ENSP00000317301.4:p.Cys161LeufsTer9
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.334dupT
  hgvsp: ENSP00000443269.1:p.Cys112LeufsTer9
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.604dupT
  hgvsp: ENSP00000376192.3:p.Cys202LeufsTer9
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*412dupT
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48564
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys220LeufsTer9
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

3-196457939-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457939
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457939
    reference: chr 3
allele count: 8
allele frequency: 6.719526945303051e-5
allele num: 119056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.339A>G
  hgvsp: ENST00000541663.1:c.339A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*417A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.663A>G
  hgvsp: ENST00000296333.5:c.663A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.486A>G
  hgvsp: ENST00000426755.1:c.486A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.609A>G
  hgvsp: ENST00000392391.3:c.609A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*570A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.486A>G
  hgvsp: ENST00000314118.4:c.486A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3708
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln221Gln
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-196457945-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457945
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457945
    reference: chr 3
allele count: 1
allele frequency: 8.425593583067927e-6
allele num: 118686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.492C>A
  hgvsp: ENSP00000409073.1:p.Asn164Lys
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.669C>A
  hgvsp: ENSP00000296333.5:p.Asn223Lys
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.615C>A
  hgvsp: ENSP00000376192.3:p.Asn205Lys
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.345C>A
  hgvsp: ENSP00000443269.1:p.Asn115Lys
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*423C>A
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.492C>A
  hgvsp: ENSP00000317301.4:p.Asn164Lys
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*576C>A
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36707
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn223Lys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-196457953-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457953
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457953
    reference: chr 3
allele count: 1
allele frequency: 8.641548565502938e-6
allele num: 115720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.500A>T
  hgvsp: ENSP00000409073.1:p.Lys167Met
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*431A>T
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.677A>T
  hgvsp: ENSP00000296333.5:p.Lys226Met
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.623A>T
  hgvsp: ENSP00000376192.3:p.Lys208Met
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.353A>T
  hgvsp: ENSP00000443269.1:p.Lys118Met
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.500A>T
  hgvsp: ENSP00000317301.4:p.Lys167Met
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*584A>T
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3700
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Lys226Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-196457954-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457954
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457954
    reference: chr 3
allele count: 1
allele frequency: 8.644088308006155e-6
allele num: 115686
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.501G>C
  hgvsp: ENSP00000317301.4:p.Lys167Asn
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.678G>C
  hgvsp: ENSP00000296333.5:p.Lys226Asn
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*432G>C
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.501G>C
  hgvsp: ENSP00000409073.1:p.Lys167Asn
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.624G>C
  hgvsp: ENSP00000376192.3:p.Lys208Asn
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.354G>C
  hgvsp: ENSP00000443269.1:p.Lys118Asn
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*585G>C
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5187
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys226Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

3-196457956-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457956
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457956
    reference: chr 3
allele count: 1
allele frequency: 8.643789437289307e-6
allele num: 115690
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.680A>G
  hgvsp: ENSP00000296333.5:p.Tyr227Cys
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*434A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.356A>G
  hgvsp: ENSP00000443269.1:p.Tyr119Cys
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.503A>G
  hgvsp: ENSP00000317301.4:p.Tyr168Cys
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.626A>G
  hgvsp: ENSP00000376192.3:p.Tyr209Cys
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.503A>G
  hgvsp: ENSP00000409073.1:p.Tyr168Cys
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*587A>G
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5218
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43023
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr227Cys
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

3-196457958-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 196457958
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 196457958
    reference: chr 3
allele count: 26
allele frequency: 2.255769564462953e-4
allele num: 115260
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000296333
  ensembl transcript: ENST00000296333
  gene symbol: PIGX
  hgvsc: ENST00000296333.5:c.682A>G
  hgvsp: ENSP00000296333.5:p.Lys228Glu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000409073
  ensembl transcript: ENST00000426755
  gene symbol: PIGX
  hgvsc: ENST00000426755.1:c.505A>G
  hgvsp: ENSP00000409073.1:p.Lys169Glu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000393424
  ensembl transcript: ENST00000453218
  gene symbol: PIGX
  hgvsc: ENST00000453218.2:c.*589A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000443269
  ensembl transcript: ENST00000541663
  gene symbol: PIGX
  hgvsc: ENST00000541663.1:c.358A>G
  hgvsp: ENSP00000443269.1:p.Lys120Glu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000317301
  ensembl transcript: ENST00000314118
  gene symbol: PIGX
  hgvsc: ENST00000314118.4:c.505A>G
  hgvsp: ENSP00000317301.4:p.Lys169Glu
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000413672
  ensembl transcript: ENST00000415832
  gene symbol: PIGX
  hgvsc: ENST00000415832.1:c.*436A>G
  variant of: http://identifiers.org/hgnc/26046
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163964
  ensembl protein: ENSP00000376192
  ensembl transcript: ENST00000392391
  gene symbol: PIGX
  hgvsc: ENST00000392391.3:c.628A>G
  hgvsp: ENSP00000376192.3:p.Lys210Glu
  variant of: http://identifiers.org/hgnc/26046
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12413
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32815
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42533
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys228Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1180
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6272
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47593
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3499
bin: 9.75e1
variant carriers: 925

GenotypeQuality
all individuals: 544
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 622
allele frequency: 5.377831575306934e-2
allele num: 11566
num of homozygotes: 28

European (Non-Finnish)
type: Population
allele count: 41
allele frequency: 6.145820841827557e-4
allele num: 66712
num of homozygotes: 0

South Asian
type: Population
allele count: 23
allele frequency: 1.393432691142615e-3
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 7.72626931567329e-3
allele num: 906
num of homozygotes: 0

African
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allele count: 11
allele frequency: 1.057285659361784e-3
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 254
allele frequency: 2.937095282146161e-2
allele num: 8648
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

VQSLOD
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SIO_000300: 4.93e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

DP
type: SiteQuality
SIO_000300: 1.684206e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.36e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
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allele count: 19
allele frequency: 1.151096570943899e-3
allele num: 16506
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.580000000000001e-1

ReadPosRankSum
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QD
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DP
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MQRankSum
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SIO_000300: 2.03e-1

BaseQRankSum
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SIO_000300: -2.427e0

VQSLOD
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SIO_000300: 3.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.640674e6

VQSLOD
type: SiteQuality
SIO_000300: -4.678e-1

BaseQRankSum
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SIO_000300: -3.613e0

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
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SIO_000300: 5.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

MQ
type: SiteQuality
SIO_000300: 5.873e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.923076923076923e-4
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 4.0224e1

MQ
type: SiteQuality
SIO_000300: 5.733e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.986e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.647e0

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

DP
type: SiteQuality
SIO_000300: 1.640177e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002552169343942e-5
allele num: 66610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.428e0

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

DP
type: SiteQuality
SIO_000300: 1.638709e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.043e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.524907443638444e-5
allele num: 66446
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

South Asian
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allele frequency: 1.15557718039168e-3
allele num: 16442
num of homozygotes: 0

African
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Latino
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 4
allele frequency: 6.024096385542168e-5
allele num: 66400
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6596
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MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

ClippingRankSum
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QD
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQ
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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allele frequency: 1.74246384387524e-4
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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Other
type: Population
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DP
type: SiteQuality
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QD
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ReadPosRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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FS
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

South Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66234
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East Asian
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Latino
type: Population
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allele frequency: 1.745200698080279e-4
allele num: 11460
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Other
type: Population
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FS
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.86e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.381e1

VQSLOD
type: SiteQuality
SIO_000300: -2.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e0

DP
type: SiteQuality
SIO_000300: 1.630738e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524064986131009e-5
allele num: 65614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.92e-1

FS
type: SiteQuality
SIO_000300: 6.039e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.888e0

DP
type: SiteQuality
SIO_000300: 1.617081e6

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

QD
type: SiteQuality
SIO_000300: 1.499e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.409e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 15520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9856
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6264
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.350757271143279e-5
allele num: 59688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7762
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.02e-1

FS
type: SiteQuality
SIO_000300: 7.306e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.45502e6

QD
type: SiteQuality
SIO_000300: 1.045e1

VQSLOD
type: SiteQuality
SIO_000300: 4.04e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.00416433090414e-5
allele num: 49948
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.009e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

QD
type: SiteQuality
SIO_000300: 1.292e1

MQRankSum
type: SiteQuality
SIO_000300: -7.53e-1

DP
type: SiteQuality
SIO_000300: 1.178239e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.395868230039084e-4
allele num: 7164
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47848
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5286
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ReadPosRankSum
type: SiteQuality
SIO_000300: -6.52e-1

QD
type: SiteQuality
SIO_000300: 1.63e1

MQ
type: SiteQuality
SIO_000300: 5.918e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.123981e6

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5240
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 7.664009809932556e-5
allele num: 13048
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -1.318e0

QD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -2.081e0

DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: -1.557e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 39090
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.60926939169617e-4
allele num: 12428
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7314
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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MQ
type: SiteQuality
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FS
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DP
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QD
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4378
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele num: 12078
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 37072
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Other
type: Population
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 5
allele frequency: 1.563966218329684e-4
allele num: 31970
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Other
type: Population
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European (Finnish)
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DP
type: SiteQuality
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VQSLOD
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FS
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QD
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MQ
type: SiteQuality
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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Other
type: Population
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East Asian
type: Population
allele count: 3
allele frequency: 1.023890784982935e-3
allele num: 2930
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DP
type: SiteQuality
SIO_000300: 7.72356e5

MQRankSum
type: SiteQuality
SIO_000300: -3.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.475e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

QD
type: SiteQuality
SIO_000300: 1.187e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-2

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.823501799405414e-5
allele num: 25564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3460
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

FS
type: SiteQuality
SIO_000300: 3.641e0

MQ
type: SiteQuality
SIO_000300: 5.635e1

MQRankSum
type: SiteQuality
SIO_000300: -1.381e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.25e-2

QD
type: SiteQuality
SIO_000300: 1.236e1

DP
type: SiteQuality
SIO_000300: 7.4546e5

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.595588235294118e-5
allele num: 21760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.461e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.76e-2

DP
type: SiteQuality
SIO_000300: 6.89375e5

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.995e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 6.6e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.614823133071308e-5
allele num: 17810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1282
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.31e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.77e-1

MQ
type: SiteQuality
SIO_000300: 5.85e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.399999999999999e-1

DP
type: SiteQuality
SIO_000300: 6.36591e5

QD
type: SiteQuality
SIO_000300: 1.6e1

GenotypeQuality
all individuals: 309
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1334
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GenotypeQuality
all individuals: 2554
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 1
allele frequency: 2.73224043715847e-3
allele num: 366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2722
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.119999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

DP
type: SiteQuality
SIO_000300: 6.2883e5

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

GenotypeQuality
all individuals: 244
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variant carriers: 7

GenotypeQuality
all individuals: 623
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2772
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variant carriers: 261

GenotypeQuality
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GenotypeQuality
all individuals: 400
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GenotypeQuality
all individuals: 56
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variant carriers: 14

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2640
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.702702702702703e-3
allele num: 370
num of homozygotes: 0

African
type: Population
allele count: 225
allele frequency: 5.252100840336135e-2
allele num: 4284
num of homozygotes: 2

Latino
type: Population
allele count: 7
allele frequency: 6.31768953068592e-3
allele num: 1108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.214181641573579e-4
allele num: 16472
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.996252810392206e-4
allele num: 8006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1408
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.503e1

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.03e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.38e-1

MQ
type: SiteQuality
SIO_000300: 5.705e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 6.28163e5

BaseQRankSum
type: SiteQuality
SIO_000300: -5.39e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2289
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GenotypeQuality
all individuals: 3249
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548610896026264e-5
allele num: 64574
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.349789e6

QD
type: SiteQuality
SIO_000300: 8.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

FS
type: SiteQuality
SIO_000300: 3.992e0

MQ
type: SiteQuality
SIO_000300: 5.88e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

VQSLOD
type: SiteQuality
SIO_000300: -1.474e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547412725922258e-5
allele num: 64624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.751e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.839e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.58e-1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -7.93e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
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African
type: Population
allele count: 3
allele frequency: 3.198976327575176e-4
allele num: 9378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64644
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
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Other
type: Population
allele count: 0
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allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.758101243650377e-5
allele num: 11418
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

FS
type: SiteQuality
SIO_000300: 1.315e1

QD
type: SiteQuality
SIO_000300: 1.744e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9376
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546072974644403e-5
allele num: 64680
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

QD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -7.05e-1

DP
type: SiteQuality
SIO_000300: 2.377532e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.474e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 72
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9380
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64712
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

South Asian
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allele frequency: 6.086427267194157e-5
allele num: 16430
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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DP
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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QD
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MQRankSum
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MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.588e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64740
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 3.041732570872369e-4
allele num: 16438
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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QD
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FS
type: SiteQuality
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MQRankSum
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VQSLOD
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BaseQRankSum
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SIO_000300: 2.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 9394
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.543114622554163e-5
allele num: 64804
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.948e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

DP
type: SiteQuality
SIO_000300: 2.395288e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.152e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.62877244954638e-5
allele num: 64812
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
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QD
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 9.53e-1

FS
type: SiteQuality
SIO_000300: 3.247e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.598e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 2.395887e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.085277057879798e-5
allele num: 64824
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.396252e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.24e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

FS
type: SiteQuality
SIO_000300: 5.999e0

QD
type: SiteQuality
SIO_000300: 8.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.83e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9392
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.542448173741362e-5
allele num: 64832
num of homozygotes: 0

Other
type: Population
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allele num: 878
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MQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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ClippingRankSum
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SIO_000300: 1.41e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.075334143377886e-5
allele num: 16460
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 2.129018522461145e-4
allele num: 9394
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.542400592281827e-5
allele num: 64834
num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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ReadPosRankSum
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DP
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QD
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 30

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 2.980625931445604e-3
allele num: 9394
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.542400592281827e-5
allele num: 64834
num of homozygotes: 0

Latino
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allele frequency: 8.726003490401397e-5
allele num: 11460
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Other
type: Population
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QD
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ClippingRankSum
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MQ
type: SiteQuality
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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FS
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 8.724480893386844e-5
allele num: 11462
num of homozygotes: 0

East Asian
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European (Non-Finnish)
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European (Finnish)
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Other
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South Asian
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African
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FS
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MQRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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Other
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African
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allele num: 9392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.084896347482724e-5
allele num: 64832
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

FS
type: SiteQuality
SIO_000300: 3.993e0

MQRankSum
type: SiteQuality
SIO_000300: 8.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.54e-1

QD
type: SiteQuality
SIO_000300: 1.364e1

DP
type: SiteQuality
SIO_000300: 2.396875e6

GenotypeQuality
all individuals: 281
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 17037
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.543400419804914e-5
allele num: 64792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.824e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.364e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.366e0

DP
type: SiteQuality
SIO_000300: 2.39529e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.659e0

QD
type: SiteQuality
SIO_000300: 1.219e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9392
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.199904007679386e-4
allele num: 8334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64790
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.055e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.21e-1

DP
type: SiteQuality
SIO_000300: 2.394356e6

MQ
type: SiteQuality
SIO_000300: 5.899e1

VQSLOD
type: SiteQuality
SIO_000300: -6.536e-1

FS
type: SiteQuality
SIO_000300: 4.818e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.59e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 16

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3053
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.06318347509113e-3
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.389231909113361e-4
allele num: 64784
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.474e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.65e-1

FS
type: SiteQuality
SIO_000300: 2.295e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.48e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.51e-1

DP
type: SiteQuality
SIO_000300: 2.392251e6

GenotypeQuality
all individuals: 376
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6677
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GenotypeQuality
all individuals: 14826
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.745505323791238e-4
allele num: 11458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64764
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

DP
type: SiteQuality
SIO_000300: 2.382757e6

VQSLOD
type: SiteQuality
SIO_000300: 7.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.408e1

FS
type: SiteQuality
SIO_000300: 2.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.99e0

GenotypeQuality
all individuals: 6983
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.803686735687746e-5
allele num: 55442
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

MQRankSum
type: SiteQuality
SIO_000300: -3.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.63e0

VQSLOD
type: SiteQuality
SIO_000300: -2.017e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 1.212272e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 7162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3746
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variant carriers: 2

GenotypeQuality
all individuals: 2095
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.423892923252172e-4
allele num: 14046
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6818
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.223986e6

MQ
type: SiteQuality
SIO_000300: 5.855e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.32e0

QD
type: SiteQuality
SIO_000300: 1.183e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 463
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.790638541703971e-5
allele num: 55846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6104
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.248082e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 792
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

East Asian
type: Population
allele count: 43
allele frequency: 6.204906204906205e-3
allele num: 6930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9418
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.049203440011279e-5
allele num: 14186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.265682e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.324e0

MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.437e1

FS
type: SiteQuality
SIO_000300: 2.136e0

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 276
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14270
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African
type: Population
allele count: 1
allele frequency: 1.078748651564186e-4
allele num: 9270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.291e1

MQ
type: SiteQuality
SIO_000300: 6.047e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

VQSLOD
type: SiteQuality
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DP
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-1

FS
type: SiteQuality
SIO_000300: 1.602e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 903
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GenotypeQuality
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GenotypeQuality
all individuals: 250
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3011
bin: 3.75e1
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GenotypeQuality
all individuals: 674
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.748924411486936e-5
allele num: 57178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7192
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.385041551246538e-4
allele num: 14440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.64e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 7.87e0

MQRankSum
type: SiteQuality
SIO_000300: -8.36e-1

DP
type: SiteQuality
SIO_000300: 1.35911e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.149999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.532e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 389
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variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7304
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.37797988149373e-4
allele num: 14514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9848
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.206e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.384024e6

VQSLOD
type: SiteQuality
SIO_000300: -8.772e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

FS
type: SiteQuality
SIO_000300: 6.154e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.878e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6236
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.732613745047138e-4
allele num: 14638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.487e1

DP
type: SiteQuality
SIO_000300: 1.411224e6

MQ
type: SiteQuality
SIO_000300: 5.889e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.703e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.437e0

MQRankSum
type: SiteQuality
SIO_000300: 5.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 272
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.338329764453962e-4
allele num: 14944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6302
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.34e-1

FS
type: SiteQuality
SIO_000300: 2.098e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

QD
type: SiteQuality
SIO_000300: 1.532e1

DP
type: SiteQuality
SIO_000300: 1.455463e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.01e-1

GenotypeQuality
all individuals: 4817
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
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variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.918839153959665e-5
allele num: 60990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10664
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.491886e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.517e0

MQRankSum
type: SiteQuality
SIO_000300: 9.68e-1

MQ
type: SiteQuality
SIO_000300: 5.882e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 2.357e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.777e-1

QD
type: SiteQuality
SIO_000300: 1.486e1

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
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variant carriers: 0

GenotypeQuality
all individuals: 1692
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 446
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3159
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GenotypeQuality
all individuals: 274
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.377344336084021e-5
allele num: 10664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.486e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.517e0

DP
type: SiteQuality
SIO_000300: 1.491886e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.777e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.68e-1

FS
type: SiteQuality
SIO_000300: 2.357e0

MQ
type: SiteQuality
SIO_000300: 5.882e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

GenotypeQuality
all individuals: 3694
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 489
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GenotypeQuality
all individuals: 11
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.77999288002848e-4
allele num: 11236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.95e-1

FS
type: SiteQuality
SIO_000300: 1.196e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.521e1

DP
type: SiteQuality
SIO_000300: 1.572677e6

GenotypeQuality
all individuals: 205
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variant carriers: 0

GenotypeQuality
all individuals: 1660
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GenotypeQuality
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GenotypeQuality
all individuals: 149
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 778
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GenotypeQuality
all individuals: 224
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169590643274854e-4
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64672
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.15e-1

MQ
type: SiteQuality
SIO_000300: 5.99e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.58332e6

FS
type: SiteQuality
SIO_000300: 5.78e0

MQRankSum
type: SiteQuality
SIO_000300: -4.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.28e-1

QD
type: SiteQuality
SIO_000300: 1.437e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

GenotypeQuality
all individuals: 438
bin: 8.25e1
variant carriers: 17

GenotypeQuality
all individuals: 177
bin: 3.75e1
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GenotypeQuality
all individuals: 276
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variant carriers: 8

GenotypeQuality
all individuals: 160
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variant carriers: 13

GenotypeQuality
all individuals: 151
bin: 5.75e1
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GenotypeQuality
all individuals: 3527
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
all individuals: 17
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variant carriers: 5

GenotypeQuality
all individuals: 18
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variant carriers: 2

GenotypeQuality
all individuals: 6293
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variant carriers: 2662

GenotypeQuality
all individuals: 843
bin: 7.25e1
variant carriers: 13

Latino
type: Population
allele count: 2079
allele frequency: 1.825926576497453e-1
allele num: 11386
num of homozygotes: 195

South Asian
type: Population
allele count: 214
allele frequency: 1.323929720366246e-2
allele num: 16164
num of homozygotes: 8

East Asian
type: Population
allele count: 66
allele frequency: 7.697690692792162e-3
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 488
allele frequency: 7.512315270935961e-3
allele num: 64960
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 120
allele frequency: 1.838235294117647e-2
allele num: 6528
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 1.952362358453729e-3
allele num: 10244
num of homozygotes: 0

Other
type: Population
allele count: 24
allele frequency: 2.666666666666667e-2
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.633944e6

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

QD
type: SiteQuality
SIO_000300: 1.395e1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.087e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

FS
type: SiteQuality
SIO_000300: 1.387e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

GenotypeQuality
all individuals: 147
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 780
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GenotypeQuality
all individuals: 3724
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4050
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.493e0

MQRankSum
type: SiteQuality
SIO_000300: -4.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.466e0

VQSLOD
type: SiteQuality
SIO_000300: 2.1e-2

MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 1.146e0

QD
type: SiteQuality
SIO_000300: 1.105e1

DP
type: SiteQuality
SIO_000300: 1.613732e6

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3725
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48850
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.100536847242558e-5
allele num: 16392
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

QD
type: SiteQuality
SIO_000300: 1.186e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 1.619669e6

FS
type: SiteQuality
SIO_000300: 5.573e0

VQSLOD
type: SiteQuality
SIO_000300: -1.858e0

MQ
type: SiteQuality
SIO_000300: 5.832e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.394e0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48947
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.25e1
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GenotypeQuality
all individuals: 957
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3724
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 797
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514004542013626e-5
allele num: 66050
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.925e1

MQRankSum
type: SiteQuality
SIO_000300: -3.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.387e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

QD
type: SiteQuality
SIO_000300: 1.374e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 1.621334e6

GenotypeQuality
all individuals: 97
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3871
bin: 9.75e1
variant carriers: 179

GenotypeQuality
all individuals: 280
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66140
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.433978337592795e-4
allele num: 16434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 176
allele frequency: 1.701798491587701e-2
allele num: 10342
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.630815e6

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

FS
type: SiteQuality
SIO_000300: 5.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.06e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.21e-1

GenotypeQuality
all individuals: 777
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 112
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3686
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 448
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.542701393095094e-5
allele num: 66040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.530924678505818e-4
allele num: 6532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.918287937743191e-4
allele num: 10280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.629679e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 1.74964e2

VQSLOD
type: SiteQuality
SIO_000300: -1.438e2

QD
type: SiteQuality
SIO_000300: 3.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

MQ
type: SiteQuality
SIO_000300: 5.816e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.824e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.608e0

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
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variant carriers: 0

GenotypeQuality
all individuals: 4153
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48982
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variant carriers: 0

GenotypeQuality
all individuals: 580
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 3704
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 944
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.935359009096187e-4
allele num: 10334
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.119e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

FS
type: SiteQuality
SIO_000300: 8.641e0

QD
type: SiteQuality
SIO_000300: 1.137e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.625391e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.51e-1

GenotypeQuality
all individuals: 942
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4166
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3702
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 779
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511350240304688e-5
allele num: 66166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

FS
type: SiteQuality
SIO_000300: 6.352e0

MQ
type: SiteQuality
SIO_000300: 6.045e1

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.424e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.591e0

DP
type: SiteQuality
SIO_000300: 1.624948e6

GenotypeQuality
all individuals: 278
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 4172
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3702
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 269
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511258878645912e-5
allele num: 66170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.9e1

FS
type: SiteQuality
SIO_000300: 5.048e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.85e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.548e-1

DP
type: SiteQuality
SIO_000300: 1.624978e6

QD
type: SiteQuality
SIO_000300: 9.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

GenotypeQuality
all individuals: 270
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 7.75e1
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GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
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variant carriers: 0

GenotypeQuality
all individuals: 4163
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
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variant carriers: 0

GenotypeQuality
all individuals: 3704
bin: 9.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.871467286101432e-4
allele num: 10332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.14e-1

MQ
type: SiteQuality
SIO_000300: 5.912e1

QD
type: SiteQuality
SIO_000300: 1.432e1

MQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

FS
type: SiteQuality
SIO_000300: 2.603e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.625219e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3702
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 743
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variant carriers: 0

GenotypeQuality
all individuals: 911
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GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4107
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.527650473571647e-4
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.18e-1

QD
type: SiteQuality
SIO_000300: 1.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

DP
type: SiteQuality
SIO_000300: 1.618789e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.664e0

FS
type: SiteQuality
SIO_000300: 1.348e0

VQSLOD
type: SiteQuality
SIO_000300: -1.355e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 47264
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4024
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.933698415802855e-4
allele num: 10226
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.753501400560224e-5
allele num: 11424
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.174364040503828e-5
allele num: 16196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168224299065421e-4
allele num: 8560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.066355942597816e-5
allele num: 65224
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

DP
type: SiteQuality
SIO_000300: 1.605718e6

FS
type: SiteQuality
SIO_000300: 5.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 3701
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46973
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53907716932927e-5
allele num: 64974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.599451e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.898e0

VQSLOD
type: SiteQuality
SIO_000300: -4.684e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

QD
type: SiteQuality
SIO_000300: 8.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.376e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.66e-1

GenotypeQuality
all individuals: 42281
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3526
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.581928053912108e-5
allele num: 63214
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.092e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

FS
type: SiteQuality
SIO_000300: 4.263e0

MQRankSum
type: SiteQuality
SIO_000300: -1.637e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-1

DP
type: SiteQuality
SIO_000300: 1.551449e6

VQSLOD
type: SiteQuality
SIO_000300: -2.094e0

MQ
type: SiteQuality
SIO_000300: 5.858e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3520
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3700
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42400
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.58247879478415e-5
allele num: 63192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15658
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 4.89e0

QD
type: SiteQuality
SIO_000300: 1.135e1

DP
type: SiteQuality
SIO_000300: 1.551464e6

MQRankSum
type: SiteQuality
SIO_000300: 3.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 658
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3518
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3699
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 264
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 818
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.973438621679828e-5
allele num: 11144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15664
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.052e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 4.943e0

VQSLOD
type: SiteQuality
SIO_000300: -1.672e-1

DP
type: SiteQuality
SIO_000300: 1.55069e6

QD
type: SiteQuality
SIO_000300: 7.84e0

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
all individuals: 5612
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3722
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 3504
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.533494343460022e-5
allele num: 62936
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 1.024721403868323e-3
allele num: 15614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.504504504504504e-3
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11104
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

DP
type: SiteQuality
SIO_000300: 1.543892e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1