2-168107569-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107569
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107569
    reference: chr 2
allele count: 7
allele frequency: 5.860781325876187e-5
allele num: 119438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2973C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9667C>T
  hgvsp: ENSP00000386840.1:p.Arg3223Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9667C>T
  hgvsp: ENSP00000295237.9:p.Arg3223Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2973C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2973C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9001C>T
  hgvsp: ENSP00000387255.1:p.Arg3001Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2973C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2973C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5933
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18076
  bin: 9.75e1
  variant carriers: 7
hgvs: p.Arg3223Cys
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

2-168107569-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107569
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107569
    reference: chr 2
allele count: 1
allele frequency: 8.372544751251695e-6
allele num: 119438
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2973C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9667C>G
  hgvsp: ENSP00000386840.1:p.Arg3223Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9001C>G
  hgvsp: ENSP00000387255.1:p.Arg3001Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2973C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2973C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2973C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9667C>G
  hgvsp: ENSP00000295237.9:p.Arg3223Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2973C>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18076
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3454
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg3223Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

2-168107570-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107570
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107570
    reference: chr 2
allele count: 2
allele frequency: 1.674761346508122e-5
allele num: 119420
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2972G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2972G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2972G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9002G>A
  hgvsp: ENSP00000387255.1:p.Arg3001His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9668G>A
  hgvsp: ENSP00000295237.9:p.Arg3223His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2972G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2972G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9668G>A
  hgvsp: ENSP00000386840.1:p.Arg3223His
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1689
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6849
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg3223His
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

2-168107582-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107582
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107582
    reference: chr 2
allele count: 5
allele frequency: 4.191114836546522e-5
allele num: 119300
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2960T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2960T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9680T>G
  hgvsp: ENSP00000295237.9:p.Ile3227Arg
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9680T>G
  hgvsp: ENSP00000386840.1:p.Ile3227Arg
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2960T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2960T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9014T>G
  hgvsp: ENSP00000387255.1:p.Ile3005Arg
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2960T>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3455
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile3227Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

2-168107588-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107588
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107588
    reference: chr 2
allele count: 3
allele frequency: 2.51563888842303e-5
allele num: 119254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2954C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2954C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9020C>T
  hgvsp: ENSP00000387255.1:p.Thr3007Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9686C>T
  hgvsp: ENSP00000295237.9:p.Thr3229Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2954C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9686C>T
  hgvsp: ENSP00000386840.1:p.Thr3229Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2954C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2954C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5931
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9004
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6835
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3285
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20452
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr3229Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

2-168107591-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107591
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107591
    reference: chr 2
allele count: 1
allele frequency: 8.388276544701125e-6
allele num: 119214
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2951G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9023G>C
  hgvsp: ENSP00000387255.1:p.Arg3008Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9689G>C
  hgvsp: ENSP00000295237.9:p.Arg3230Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2951G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2951G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2951G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9689G>C
  hgvsp: ENSP00000386840.1:p.Arg3230Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2951G>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2096
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6830
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg3230Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

2-168107594-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107594
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107594
    reference: chr 2
allele count: 2
allele frequency: 1.678443746957821e-5
allele num: 119158
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9692G>T
  hgvsp: ENSP00000386840.1:p.Gly3231Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2948G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2948G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2948G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9692G>T
  hgvsp: ENSP00000295237.9:p.Gly3231Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2948G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9026G>T
  hgvsp: ENSP00000387255.1:p.Gly3009Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2948G>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6826
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18069
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly3231Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

2-168107609-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107609
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107609
    reference: chr 2
allele count: 3
allele frequency: 2.520500067213335e-5
allele num: 119024
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2933C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2933C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9041C>T
  hgvsp: ENSP00000387255.1:p.Pro3014Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2933C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9707C>T
  hgvsp: ENSP00000295237.9:p.Pro3236Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9707C>T
  hgvsp: ENSP00000386840.1:p.Pro3236Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2933C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2933C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20182
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro3236Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

2-168107611-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107611
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107611
    reference: chr 2
allele count: 2
allele frequency: 1.680785262874815e-5
allele num: 118992
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2931A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2931A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2931A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9043A>G
  hgvsp: ENSP00000387255.1:p.Thr3015Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2931A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9709A>G
  hgvsp: ENSP00000295237.9:p.Thr3237Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9709A>G
  hgvsp: ENSP00000386840.1:p.Thr3237Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2931A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14554
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9309
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18068
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2809
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3440
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6797
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr3237Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-168107613-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107613
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107613
    reference: chr 2
allele count: 1
allele frequency: 8.402937667008386e-6
allele num: 119006
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9711A>C
  hgvsp: ENST00000409195.1:c.9711A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2929A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2929A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9711A>C
  hgvsp: ENST00000295237.9:c.9711A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2929A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9045A>C
  hgvsp: ENST00000409273.1:c.9045A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2929A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2929A>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18068
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20119
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr3237Thr
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

2-168107613-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107613
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107613
    reference: chr 2
allele count: 5
allele frequency: 4.201468833504193e-5
allele num: 119006
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2929A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2929A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2929A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2929A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9711A>G
  hgvsp: ENST00000295237.9:c.9711A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2929A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9045A>G
  hgvsp: ENST00000409273.1:c.9045A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9711A>G
  hgvsp: ENST00000409195.1:c.9711A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9309
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3441
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20119
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr3237Thr
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD

2-168107617-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107617
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107617
    reference: chr 2
allele count: 3
allele frequency: 2.521686503933831e-5
allele num: 118968
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2925A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2925A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2925A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9715A>G
  hgvsp: ENSP00000386840.1:p.Thr3239Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9715A>G
  hgvsp: ENSP00000295237.9:p.Thr3239Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9049A>G
  hgvsp: ENSP00000387255.1:p.Thr3017Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2925A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2925A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6792
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18066
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr3239Ala
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

2-168107631-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107631
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107631
    reference: chr 2
allele count: 17
allele frequency: 1.43003751745487e-4
allele num: 118878
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2911T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9729T>C
  hgvsp: ENST00000295237.9:c.9729T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9729T>C
  hgvsp: ENST00000409195.1:c.9729T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9063T>C
  hgvsp: ENST00000409273.1:c.9063T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2911T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2911T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2911T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2911T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6788
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20038
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn3243Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

2-168107632-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107632
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107632
    reference: chr 2
allele count: 1
allele frequency: 8.412551526878102e-6
allele num: 118870
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2910A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2910A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9730A>G
  hgvsp: ENSP00000386840.1:p.Ile3244Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2910A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2910A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9064A>G
  hgvsp: ENSP00000387255.1:p.Ile3022Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2910A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9730A>G
  hgvsp: ENSP00000295237.9:p.Ile3244Val
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8896
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3434
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile3244Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

2-168107636-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107636
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107636
    reference: chr 2
allele count: 1
allele frequency: 8.413117733169558e-6
allele num: 118862
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9734A>G
  hgvsp: ENSP00000386840.1:p.Asn3245Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2906A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2906A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2906A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9068A>G
  hgvsp: ENSP00000387255.1:p.Asn3023Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2906A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2906A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9734A>G
  hgvsp: ENSP00000295237.9:p.Asn3245Ser
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3270
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19999
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn3245Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

2-168107640-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107640
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107640
    reference: chr 2
allele count: 10
allele frequency: 8.415524960447032e-5
allele num: 118828
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2902T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9738T>C
  hgvsp: ENST00000409195.1:c.9738T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2902T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9738T>C
  hgvsp: ENST00000295237.9:c.9738T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2902T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2902T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9072T>C
  hgvsp: ENST00000409273.1:c.9072T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2902T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18069
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19955
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His3246His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

2-168107648-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107648
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107648
    reference: chr 2
allele count: 1
allele frequency: 8.416941620092923e-6
allele num: 118808
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9080G>C
  hgvsp: ENSP00000387255.1:p.Ser3027Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9746G>C
  hgvsp: ENSP00000295237.9:p.Ser3249Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2894G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2894G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2894G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9746G>C
  hgvsp: ENSP00000386840.1:p.Ser3249Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2894G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2894G>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3272
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser3249Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP

2-168107649-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107649
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107649
    reference: chr 2
allele count: 2
allele frequency: 1.68321831341525e-5
allele num: 118820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2893T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9747T>C
  hgvsp: ENST00000409195.1:c.9747T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9081T>C
  hgvsp: ENST00000409273.1:c.9081T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2893T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9747T>C
  hgvsp: ENST00000295237.9:c.9747T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2893T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2893T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2893T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser3249Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

2-168107653-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107653
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107653
    reference: chr 2
allele count: 1
allele frequency: 8.41651657212113e-6
allele num: 118814
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9751T>C
  hgvsp: ENSP00000386840.1:p.Ser3251Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2889T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2889T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2889T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9751T>C
  hgvsp: ENSP00000295237.9:p.Ser3251Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9085T>C
  hgvsp: ENSP00000387255.1:p.Ser3029Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2889T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2889T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3279
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2816
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20156
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser3251Pro
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/2-168107666-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107666
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107666
    reference: chr 2
allele count: 1
allele frequency: 8.415241685741214e-6
allele num: 118832
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2876C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2876C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2876C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9764C>A
  hgvsp: ENSP00000386840.1:p.Ser3255Tyr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9098C>A
  hgvsp: ENSP00000387255.1:p.Ser3033Tyr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2876C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9764C>A
  hgvsp: ENSP00000295237.9:p.Ser3255Tyr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2876C>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20190
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6825
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18060
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser3255Tyr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

2-168107669-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107669
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107669
    reference: chr 2
allele count: 1
allele frequency: 8.414675193537529e-6
allele num: 118840
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2873T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9767T>C
  hgvsp: ENSP00000295237.9:p.Val3256Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2873T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2873T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2873T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2873T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9101T>C
  hgvsp: ENSP00000387255.1:p.Val3034Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9767T>C
  hgvsp: ENSP00000386840.1:p.Val3256Ala
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2818
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3446
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val3256Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-168107671-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107671
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107671
    reference: chr 2
allele count: 1
allele frequency: 8.413400864897609e-6
allele num: 118858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2871G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2871G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2871G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9103G>A
  hgvsp: ENSP00000387255.1:p.Asp3035Asn
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9769G>A
  hgvsp: ENSP00000386840.1:p.Asp3257Asn
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2871G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9769G>A
  hgvsp: ENSP00000295237.9:p.Asp3257Asn
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2871G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20269
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3286
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp3257Asn
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

2-168107673-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107673
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107673
    reference: chr 2
allele count: 2
allele frequency: 1.683076664142052e-5
allele num: 118830
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9771C>T
  hgvsp: ENST00000409195.1:c.9771C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9105C>T
  hgvsp: ENST00000409273.1:c.9105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2869C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2869C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2869C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9771C>T
  hgvsp: ENST00000295237.9:c.9771C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2869C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2869C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2816
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp3257Asp
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-168107682-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107682
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107682
    reference: chr 2
allele count: 6
allele frequency: 5.044984444631296e-5
allele num: 118930
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2860G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9780G>A
  hgvsp: ENST00000295237.9:c.9780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2860G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2860G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2860G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9780G>A
  hgvsp: ENST00000409195.1:c.9780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9114G>A
  hgvsp: ENST00000409273.1:c.9114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2860G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1681
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu3260Glu
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/2-168107685-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107685
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107685
    reference: chr 2
allele count: 1
allele frequency: 8.405480373203328e-6
allele num: 118970
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2857A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9117A>C
  hgvsp: ENSP00000387255.1:p.Glu3039Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2857A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9783A>C
  hgvsp: ENSP00000295237.9:p.Glu3261Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9783A>C
  hgvsp: ENSP00000386840.1:p.Glu3261Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2857A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2857A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2857A>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3460
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3289
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu3261Asp
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

2-168107695-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107695
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107695
    reference: chr 2
allele count: 1
allele frequency: 8.399549784131571e-6
allele num: 119054
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2847G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2847G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2847G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9127G>C
  hgvsp: ENSP00000387255.1:p.Val3043Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9793G>C
  hgvsp: ENSP00000386840.1:p.Val3265Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9793G>C
  hgvsp: ENSP00000295237.9:p.Val3265Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2847G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2847G>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14748
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18068
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3467
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6878
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val3265Leu
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

2-168107700-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107700
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107700
    reference: chr 2
allele count: 1
allele frequency: 8.39560070523046e-6
allele num: 119110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9798G>A
  hgvsp: ENST00000295237.9:c.9798G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2842G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2842G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2842G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2842G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9132G>A
  hgvsp: ENST00000409273.1:c.9132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9798G>A
  hgvsp: ENST00000409195.1:c.9798G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2842G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6895
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2827
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18067
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3470
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu3266Glu
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/2-168107704-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107704
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107704
    reference: chr 2
allele count: 1
allele frequency: 8.391937026904549e-6
allele num: 119162
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2838A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2838A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2838A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9802A>C
  hgvsp: ENST00000295237.9:c.9802A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9136A>C
  hgvsp: ENST00000409273.1:c.9136A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2838A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2838A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9802A>C
  hgvsp: ENST00000409195.1:c.9802A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6896
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3300
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3468
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg3268Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

2-168107706-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107706
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107706
    reference: chr 2
allele count: 2
allele frequency: 1.67796496409155e-5
allele num: 119192
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9804A>G
  hgvsp: ENST00000295237.9:c.9804A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2836A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2836A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9804A>G
  hgvsp: ENST00000409195.1:c.9804A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2836A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2836A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2836A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9138A>G
  hgvsp: ENST00000409273.1:c.9138A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5923
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3298
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg3268Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

2-168107714-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107714
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107714
    reference: chr 2
allele count: 3
allele frequency: 2.516145265453326e-5
allele num: 119230
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2828A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9812A>G
  hgvsp: ENSP00000386840.1:p.Tyr3271Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2828A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9146A>G
  hgvsp: ENSP00000387255.1:p.Tyr3049Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2828A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9812A>G
  hgvsp: ENSP00000295237.9:p.Tyr3271Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2828A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2828A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14804
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18071
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3298
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr3271Cys
num of homozygotes: 1
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

2-168107716-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107716
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107716
    reference: chr 2
allele count: 1
allele frequency: 8.386025527061704e-6
allele num: 119246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2826G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9814G>C
  hgvsp: ENSP00000295237.9:p.Val3272Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9814G>C
  hgvsp: ENSP00000386840.1:p.Val3272Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9148G>C
  hgvsp: ENSP00000387255.1:p.Val3050Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2826G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2826G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2826G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2826G>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2824
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val3272Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

2-168107726-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107726
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107726
    reference: chr 2
allele count: 13
allele frequency: 1.089306363225017e-4
allele num: 119342
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2816A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9824A>G
  hgvsp: ENSP00000386840.1:p.Asp3275Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2816A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9824A>G
  hgvsp: ENSP00000295237.9:p.Asp3275Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2816A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2816A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9158A>G
  hgvsp: ENSP00000387255.1:p.Asp3053Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2816A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3304
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3466
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6921
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp3275Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

2-168107728-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107728
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107728
    reference: chr 2
allele count: 1
allele frequency: 8.379420144126027e-6
allele num: 119340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9826G>A
  hgvsp: ENSP00000295237.9:p.Gly3276Arg
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9160G>A
  hgvsp: ENSP00000387255.1:p.Gly3054Arg
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2814G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2814G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2814G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9826G>A
  hgvsp: ENSP00000386840.1:p.Gly3276Arg
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2814G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2814G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5923
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3468
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2825
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly3276Arg
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

2-168107737-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107737
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107737
    reference: chr 2
allele count: 258
allele frequency: 2.160333595699429e-3
allele num: 119426
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9835T>C
  hgvsp: ENSP00000295237.9:p.Ser3279Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2805T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9169T>C
  hgvsp: ENSP00000387255.1:p.Ser3057Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2805T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2805T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9835T>C
  hgvsp: ENSP00000386840.1:p.Ser3279Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2805T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2805T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 9.75e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 9326
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5899
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14795
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 9403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2816
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 2
hgvs: p.Ser3279Pro
num of homozygotes: 2
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/2-168107740-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107740
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107740
    reference: chr 2
allele count: 1
allele frequency: 8.372544751251695e-6
allele num: 119438
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2802A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2802A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2802A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9838A>C
  hgvsp: ENSP00000386840.1:p.Thr3280Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9172A>C
  hgvsp: ENSP00000387255.1:p.Thr3058Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9838A>C
  hgvsp: ENSP00000295237.9:p.Thr3280Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2802A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2802A>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20957
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2835
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr3280Pro
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-168107740-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107740
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107740
    reference: chr 2
allele count: 2
allele frequency: 1.674508950250339e-5
allele num: 119438
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9838A>G
  hgvsp: ENSP00000295237.9:p.Thr3280Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2802A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2802A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2802A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2802A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2802A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9172A>G
  hgvsp: ENSP00000387255.1:p.Thr3058Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9838A>G
  hgvsp: ENSP00000386840.1:p.Thr3280Ala
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3472
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18070
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Thr3280Ala
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

2-168107742-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107742
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107742
    reference: chr 2
allele count: 1
allele frequency: 8.371002846140968e-6
allele num: 119460
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9840T>C
  hgvsp: ENST00000295237.9:c.9840T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2800T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2800T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9840T>C
  hgvsp: ENST00000409195.1:c.9840T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2800T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2800T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9174T>C
  hgvsp: ENST00000409273.1:c.9174T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2800T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3472
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr3280Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum

2-168107745-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107745
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107745
    reference: chr 2
allele count: 1
allele frequency: 8.36988181726874e-6
allele num: 119476
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2797T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2797T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2797T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9843T>A
  hgvsp: ENSP00000386840.1:p.Asp3281Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9177T>A
  hgvsp: ENSP00000387255.1:p.Asp3059Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2797T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9843T>A
  hgvsp: ENSP00000295237.9:p.Asp3281Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2797T>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2835
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp3281Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

2-168107746-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107746
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107746
    reference: chr 2
allele count: 3
allele frequency: 2.510838452653956e-5
allele num: 119482
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9844C>G
  hgvsp: ENSP00000386840.1:p.His3282Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2796C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9178C>G
  hgvsp: ENSP00000387255.1:p.His3060Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2796C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9844C>G
  hgvsp: ENSP00000295237.9:p.His3282Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2796C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2796C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2796C>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2834
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His3282Asp
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

2-168107747-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107747
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107747
    reference: chr 2
allele count: 108
allele frequency: 9.037959429604338e-4
allele num: 119496
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2795A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2795A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9845A>G
  hgvsp: ENSP00000386840.1:p.His3282Arg
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9179A>G
  hgvsp: ENSP00000387255.1:p.His3060Arg
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2795A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9845A>G
  hgvsp: ENSP00000295237.9:p.His3282Arg
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2795A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2795A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 9.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5923
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9375
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2102
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3463
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20955
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His3282Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-168107749-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107749
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107749
    reference: chr 2
allele count: 1
allele frequency: 8.367780697203488e-6
allele num: 119506
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2793A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9181A>C
  hgvsp: ENSP00000387255.1:p.Met3061Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2793A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9847A>C
  hgvsp: ENSP00000386840.1:p.Met3283Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9847A>C
  hgvsp: ENSP00000295237.9:p.Met3283Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2793A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2793A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2793A>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18086
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Met3283Leu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum

2-168107752-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107752
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107752
    reference: chr 2
allele count: 1
allele frequency: 8.367080558251614e-6
allele num: 119516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9184G>A
  hgvsp: ENSP00000387255.1:p.Val3062Met
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2790G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9850G>A
  hgvsp: ENSP00000295237.9:p.Val3284Met
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9850G>A
  hgvsp: ENSP00000386840.1:p.Val3284Met
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2790G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2790G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2790G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2790G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9390
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3475
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val3284Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

2-168107752-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107752
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107752
    reference: chr 2
allele count: 1
allele frequency: 8.367080558251614e-6
allele num: 119516
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2790G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2790G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2790G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9184G>C
  hgvsp: ENSP00000387255.1:p.Val3062Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9850G>C
  hgvsp: ENSP00000386840.1:p.Val3284Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9850G>C
  hgvsp: ENSP00000295237.9:p.Val3284Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2790G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2790G>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18087
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val3284Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/2-168107755-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107755
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107755
    reference: chr 2
allele count: 4
allele frequency: 3.34627225271048e-5
allele num: 119536
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2787C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9187C>A
  hgvsp: ENSP00000387255.1:p.Pro3063Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2787C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9853C>A
  hgvsp: ENSP00000295237.9:p.Pro3285Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2787C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2787C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9853C>A
  hgvsp: ENSP00000386840.1:p.Pro3285Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2787C>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6952
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3309
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3475
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro3285Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

2-168107757-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107757
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107757
    reference: chr 2
allele count: 2
allele frequency: 1.672688344707614e-5
allele num: 119568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2785C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2785C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2785C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2785C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9855C>T
  hgvsp: ENST00000409195.1:c.9855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9189C>T
  hgvsp: ENST00000409273.1:c.9189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2785C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9855C>T
  hgvsp: ENST00000295237.9:c.9855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2838
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18088
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6953
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro3285Pro
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

2-168107758-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107758
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107758
    reference: chr 2
allele count: 1
allele frequency: 8.363301831563101e-6
allele num: 119570
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2784G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9856G>C
  hgvsp: ENSP00000386840.1:p.Asp3286His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9856G>C
  hgvsp: ENSP00000295237.9:p.Asp3286His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2784G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2784G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9190G>C
  hgvsp: ENSP00000387255.1:p.Asp3064His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2784G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2784G>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6958
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp3286His
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

2-168107769-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107769
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107769
    reference: chr 2
allele count: 4
allele frequency: 3.342637006334297e-5
allele num: 119666
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2773T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2773T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9867T>C
  hgvsp: ENST00000295237.9:c.9867T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2773T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9201T>C
  hgvsp: ENST00000409273.1:c.9201T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9867T>C
  hgvsp: ENST00000409195.1:c.9867T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2773T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2773T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser3289Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-168107773-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107773
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107773
    reference: chr 2
allele count: 2
allele frequency: 1.671095068598453e-5
allele num: 119682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9871G>A
  hgvsp: ENSP00000295237.9:p.Asp3291Asn
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9871G>A
  hgvsp: ENSP00000386840.1:p.Asp3291Asn
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2769G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2769G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9205G>A
  hgvsp: ENSP00000387255.1:p.Asp3069Asn
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2769G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2769G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2769G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3309
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21082
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6961
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp3291Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

2-168107779-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107779
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107779
    reference: chr 2
allele count: 1
allele frequency: 8.351846593281774e-6
allele num: 119734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9877G>A
  hgvsp: ENSP00000295237.9:p.Val3293Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9877G>A
  hgvsp: ENSP00000386840.1:p.Val3293Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2763G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2763G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2763G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9211G>A
  hgvsp: ENSP00000387255.1:p.Val3071Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2763G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2763G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val3293Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

2-168107779-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107779
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107779
    reference: chr 2
allele count: 3
allele frequency: 2.505553977984532e-5
allele num: 119734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2763G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2763G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9877G>T
  hgvsp: ENSP00000295237.9:p.Val3293Phe
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9211G>T
  hgvsp: ENSP00000387255.1:p.Val3071Phe
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2763G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9877G>T
  hgvsp: ENSP00000386840.1:p.Val3293Phe
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2763G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2763G>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3475
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val3293Phe
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

2-168107780-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107780
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107780
    reference: chr 2
allele count: 7
allele frequency: 5.845706745945585e-5
allele num: 119746
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9212T>C
  hgvsp: ENSP00000387255.1:p.Val3071Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9878T>C
  hgvsp: ENSP00000295237.9:p.Val3293Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9878T>C
  hgvsp: ENSP00000386840.1:p.Val3293Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2762T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2762T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2762T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2762T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2762T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18092
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2109
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val3293Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

2-168107789-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107789
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107788
    reference: chr 2
allele count: 1
allele frequency: 8.346688034188035e-6
allele num: 119808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2751delC
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2751delC
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9223delC
  hgvsp: ENSP00000387255.1:p.Arg3075AlafsTer30
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9889delC
  hgvsp: ENSP00000295237.9:p.Arg3297AlafsTer30
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9889delC
  hgvsp: ENSP00000386840.1:p.Arg3297AlafsTer30
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2751delC
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2751delC
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2751delC
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6962
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3472
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg3297AlafsTer30
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: TC
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-168107792-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107792
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107792
    reference: chr 2
allele count: 11
allele frequency: 9.180743807170995e-5
allele num: 119816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2750G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2750G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9890G>A
  hgvsp: ENSP00000386840.1:p.Arg3297His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2750G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2750G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2750G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9890G>A
  hgvsp: ENSP00000295237.9:p.Arg3297His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9224G>A
  hgvsp: ENSP00000387255.1:p.Arg3075His
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3474
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6962
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18092
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg3297His
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

2-168107797-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107797
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107797
    reference: chr 2
allele count: 2
allele frequency: 1.668557698725222e-5
allele num: 119864
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2745G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2745G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9895G>C
  hgvsp: ENSP00000295237.9:p.Val3299Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9229G>C
  hgvsp: ENSP00000387255.1:p.Val3077Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2745G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2745G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9895G>C
  hgvsp: ENSP00000386840.1:p.Val3299Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2745G>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5955
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3307
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21153
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val3299Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

2-168107800-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107800
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107800
    reference: chr 2
allele count: 1
allele frequency: 8.342370901810295e-6
allele num: 119870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2742G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2742G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9898G>A
  hgvsp: ENSP00000386840.1:p.Ala3300Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2742G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9898G>A
  hgvsp: ENSP00000295237.9:p.Ala3300Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2742G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9232G>A
  hgvsp: ENSP00000387255.1:p.Ala3078Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2742G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18087
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala3300Thr
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

2-168107812-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107812
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107812
    reference: chr 2
allele count: 6
allele frequency: 5.002668089647812e-5
allele num: 119936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2730C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9910C>T
  hgvsp: ENSP00000295237.9:p.Arg3304Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2730C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2730C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2730C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9244C>T
  hgvsp: ENSP00000387255.1:p.Arg3082Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9910C>T
  hgvsp: ENSP00000386840.1:p.Arg3304Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2730C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9576
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21172
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg3304Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-168107813-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107813
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107813
    reference: chr 2
allele count: 1
allele frequency: 8.339031671642289e-6
allele num: 119918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2729G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2729G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9911G>A
  hgvsp: ENSP00000295237.9:p.Arg3304His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2729G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9245G>A
  hgvsp: ENSP00000387255.1:p.Arg3082His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2729G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9911G>A
  hgvsp: ENSP00000386840.1:p.Arg3304His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2729G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6951
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18089
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg3304His
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

2-168107820-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107820
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107820
    reference: chr 2
allele count: 2
allele frequency: 1.666944490748458e-5
allele num: 119980
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9918A>G
  hgvsp: ENST00000295237.9:c.9918A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2722A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9918A>G
  hgvsp: ENST00000409195.1:c.9918A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2722A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2722A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9252A>G
  hgvsp: ENST00000409273.1:c.9252A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2722A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2722A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21206
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser3306Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

2-168107823-GCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107823
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107821
    reference: chr 2
allele count: 1
allele frequency: 8.334305668994715e-6
allele num: 119986
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2712_1177-2711delCA
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2712_1276-2711delCA
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2712_1177-2711delCA
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9928_9929delCA
  hgvsp: ENSP00000386840.1:p.Gln3310GlufsTer3
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2712_511-2711delCA
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2712_1276-2711delCA
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9262_9263delCA
  hgvsp: ENSP00000387255.1:p.Gln3088GlufsTer3
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9928_9929delCA
  hgvsp: ENSP00000295237.9:p.Gln3310GlufsTer3
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln3310GlufsTer3
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: GCA
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ

2-168107830-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107830
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107830
    reference: chr 2
allele count: 1
allele frequency: 8.330556481172942e-6
allele num: 120040
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9928C>G
  hgvsp: ENSP00000295237.9:p.Gln3310Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2712C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9262C>G
  hgvsp: ENSP00000387255.1:p.Gln3088Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2712C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9928C>G
  hgvsp: ENSP00000386840.1:p.Gln3310Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2712C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2712C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2712C>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6958
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3307
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln3310Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

2-168107844-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107844
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107844
    reference: chr 2
allele count: 3
allele frequency: 2.498417668809754e-5
allele num: 120076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9942G>A
  hgvsp: ENST00000295237.9:c.9942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2698G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2698G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2698G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9276G>A
  hgvsp: ENST00000409273.1:c.9276G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2698G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2698G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9942G>A
  hgvsp: ENST00000409195.1:c.9942G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 18093
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3481
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6956
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala3314Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-168107851-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107851
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107851
    reference: chr 2
allele count: 173
allele frequency: 1.440274401411968e-3
allele num: 120116
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2691C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2691C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9949C>A
  hgvsp: ENST00000409195.1:c.9949C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2691C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9949C>A
  hgvsp: ENST00000295237.9:c.9949C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9283C>A
  hgvsp: ENST00000409273.1:c.9283C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2691C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2691C>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 14919
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.75e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3281
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg3317Arg
num of homozygotes: 3
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

2-168107851-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107851
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107851
    reference: chr 2
allele count: 1
allele frequency: 8.325285557294615e-6
allele num: 120116
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2691C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9283C>T
  hgvsp: ENSP00000387255.1:p.Arg3095Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2691C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9949C>T
  hgvsp: ENSP00000386840.1:p.Arg3317Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2691C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9949C>T
  hgvsp: ENSP00000295237.9:p.Arg3317Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2691C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2691C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2841
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg3317Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

2-168107852-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107852
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107852
    reference: chr 2
allele count: 1
allele frequency: 8.326117364950376e-6
allele num: 120104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9284G>A
  hgvsp: ENSP00000387255.1:p.Arg3095Gln
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2690G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2690G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9950G>A
  hgvsp: ENSP00000295237.9:p.Arg3317Gln
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2690G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9950G>A
  hgvsp: ENSP00000386840.1:p.Arg3317Gln
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2690G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2690G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18118
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21161
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg3317Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

2-168107856-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107856
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107856
    reference: chr 2
allele count: 1
allele frequency: 8.322929671244279e-6
allele num: 120150
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2686T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2686T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2686T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2686T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9954T>C
  hgvsp: ENST00000295237.9:c.9954T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9288T>C
  hgvsp: ENST00000409273.1:c.9288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2686T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9954T>C
  hgvsp: ENST00000409195.1:c.9954T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2848
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21186
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr3318Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

2-168107860-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107860
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107860
    reference: chr 2
allele count: 1
allele frequency: 8.322929671244279e-6
allele num: 120150
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9958C>T
  hgvsp: ENSP00000386840.1:p.Gln3320Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2682C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2682C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9292C>T
  hgvsp: ENSP00000387255.1:p.Gln3098Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9958C>T
  hgvsp: ENSP00000295237.9:p.Gln3320Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2682C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2682C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2682C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9541
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln3320Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD

2-168107864-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107864
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107864
    reference: chr 2
allele count: 23
allele frequency: 1.913827822063938e-4
allele num: 120178
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9962T>A
  hgvsp: ENSP00000386840.1:p.Met3321Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2678T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2678T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2678T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2678T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2678T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9296T>A
  hgvsp: ENSP00000387255.1:p.Met3099Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9962T>A
  hgvsp: ENSP00000295237.9:p.Met3321Lys
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 9411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met3321Lys
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/2-168107871-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107871
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107871
    reference: chr 2
allele count: 1
allele frequency: 8.319744417451495e-6
allele num: 120196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2671A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9969A>C
  hgvsp: ENSP00000386840.1:p.Glu3323Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2671A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2671A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9969A>C
  hgvsp: ENSP00000295237.9:p.Glu3323Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2671A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9303A>C
  hgvsp: ENSP00000387255.1:p.Glu3101Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2671A>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3478
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18123
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu3323Asp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum

2-168107877-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107877
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107877
    reference: chr 2
allele count: 1
allele frequency: 8.318637074501714e-6
allele num: 120212
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9975C>T
  hgvsp: ENST00000409195.1:c.9975C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2665C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9309C>T
  hgvsp: ENST00000409273.1:c.9309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9975C>T
  hgvsp: ENST00000295237.9:c.9975C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2665C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2665C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2665C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2665C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 9412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3476
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe3325Phe
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ

2-168107877-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107877
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107876
    reference: chr 2
allele count: 1
allele frequency: 8.318637074501714e-6
allele num: 120212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9976delG
  hgvsp: ENSP00000295237.9:p.Val3326Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2664delG
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2664delG
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2664delG
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9310delG
  hgvsp: ENSP00000387255.1:p.Val3104Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2664delG
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9976delG
  hgvsp: ENSP00000386840.1:p.Val3326Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2664delG
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 9562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18123
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val3326Ter
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: CG
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

2-168107878-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168107878
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168107878
    reference: chr 2
allele count: 3
allele frequency: 2.495757212738345e-5
allele num: 120204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1177-2664G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1276-2664G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.9976G>A
  hgvsp: ENSP00000295237.9:p.Val3326Met
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.9976G>A
  hgvsp: ENSP00000386840.1:p.Val3326Met
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1177-2664G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1276-2664G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.9310G>A
  hgvsp: ENSP00000387255.1:p.Val3104Met
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.511-2664G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val3326Met
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6854
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2812
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20664
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3291
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3454
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.060445387062566e-4
allele num: 66010
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e-1

FS
type: SiteQuality
SIO_000300: 1.104e0

QD
type: SiteQuality
SIO_000300: 1.26e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

MQRankSum
type: SiteQuality
SIO_000300: -1.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

DP
type: SiteQuality
SIO_000300: 2.298587e6

GenotypeQuality
all individuals: 1688
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20664
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6854
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2098
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3291
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.748906386701662e-5
allele num: 11430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66010
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

FS
type: SiteQuality
SIO_000300: 1.104e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e-1

QD
type: SiteQuality
SIO_000300: 1.26e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

DP
type: SiteQuality
SIO_000300: 2.298587e6

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18070
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 20653
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3290
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3451
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2098
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2812
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21654501216545e-4
allele num: 16440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65996
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.255e0

QD
type: SiteQuality
SIO_000300: 1.238e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: 6.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

DP
type: SiteQuality
SIO_000300: 2.298143e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.44e-1

GenotypeQuality
all individuals: 20490
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2096
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18069
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3285
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1689
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6839
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.750437521876094e-5
allele num: 11428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.55000455000455e-5
allele num: 65934
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.05797714769361e-4
allele num: 9452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

FS
type: SiteQuality
SIO_000300: 3.189e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.27e-1

DP
type: SiteQuality
SIO_000300: 2.295511e6

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.48e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

QD
type: SiteQuality
SIO_000300: 1.474e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.85e-1

GenotypeQuality
all individuals: 2812
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3452
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2096
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18070
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.552213893356803e-5
allele num: 65902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.269e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

DP
type: SiteQuality
SIO_000300: 2.294307e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.124e0

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

QD
type: SiteQuality
SIO_000300: 1.303e1

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20431
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3282
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2813
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3453
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18069
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.049e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.267e1

DP
type: SiteQuality
SIO_000300: 2.293798e6

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20411
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3283
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2814
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3451
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216989168796398e-4
allele num: 16434
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.73e-1

QD
type: SiteQuality
SIO_000300: 9.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.685e0

MQ
type: SiteQuality
SIO_000300: 5.888e1

DP
type: SiteQuality
SIO_000300: 2.293401e6

VQSLOD
type: SiteQuality
SIO_000300: -6.264e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 3.11e0

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

GenotypeQuality
all individuals: 3273
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6800
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3442
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2810
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18068
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.826595226497808e-4
allele num: 16424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.199e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

DP
type: SiteQuality
SIO_000300: 2.290082e6

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.118e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

FS
type: SiteQuality
SIO_000300: 4.14e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.042102701387199e-5
allele num: 65744
num of homozygotes: 0

Other
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MQRankSum
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BaseQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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QD
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FS
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VQSLOD
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.520866285436184e-5
allele num: 65752
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQ
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FS
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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East Asian
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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DP
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MQ
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MQRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Other
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MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
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QD
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FS
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DP
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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allele num: 65682
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European (Finnish)
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allele num: 6606
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East Asian
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Latino
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African
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Other
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QD
type: SiteQuality
SIO_000300: 1.482e1

FS
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BaseQRankSum
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ClippingRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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Latino
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Other
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European (Finnish)
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East Asian
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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InbreedingCoeff
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QD
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FS
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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African
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East Asian
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European (Finnish)
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South Asian
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Other
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MQRankSum
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QD
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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Other
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European (Finnish)
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InbreedingCoeff
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FS
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MQ
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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QD
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DP
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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East Asian
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African
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Latino
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European (Finnish)
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South Asian
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MQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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FS
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SIO_000300: 2.12e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

DP
type: SiteQuality
SIO_000300: 2.28753e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3275
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6801
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.218026796589525e-4
allele num: 16420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

QD
type: SiteQuality
SIO_000300: 1.045e1

DP
type: SiteQuality
SIO_000300: 2.287602e6

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.271e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522997258604934e-5
allele num: 65660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

FS
type: SiteQuality
SIO_000300: 4.8e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

VQSLOD
type: SiteQuality
SIO_000300: 5.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

DP
type: SiteQuality
SIO_000300: 2.287998e6

QD
type: SiteQuality
SIO_000300: 1.308e1

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-2

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.074806534823732e-4
allele num: 9304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65662
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e0

FS
type: SiteQuality
SIO_000300: 3.489e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.913e0

QD
type: SiteQuality
SIO_000300: 1.473e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.688e0

MQRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.265e0

DP
type: SiteQuality
SIO_000300: 2.289041e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.089392278650591e-5
allele num: 16422
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.01e1

FS
type: SiteQuality
SIO_000300: 7.83e-1

DP
type: SiteQuality
SIO_000300: 2.289399e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.986e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.173e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.090133982947625e-5
allele num: 16420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.81e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.662e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.135e0

FS
type: SiteQuality
SIO_000300: 6.583e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

DP
type: SiteQuality
SIO_000300: 2.289699e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522950869604947e-5
allele num: 65662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.171234481143125e-4
allele num: 8538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.015e0

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.224e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.290018e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 1.343e1

VQSLOD
type: SiteQuality
SIO_000300: 4.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
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allele count: 6
allele frequency: 3.653635367190354e-4
allele num: 16422
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.375e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.007e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-2

DP
type: SiteQuality
SIO_000300: 2.292137e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2102
bin: 9.25e1
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GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169590643274854e-4
allele num: 8550
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.02e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.292641e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.76e0

QD
type: SiteQuality
SIO_000300: 1.295e1

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.877e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 2820
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.06700810926163e-4
allele num: 9372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65782
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.015e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 1.426e1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.882e0

VQSLOD
type: SiteQuality
SIO_000300: -1.636e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.085e0

DP
type: SiteQuality
SIO_000300: 2.294472e6

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1684
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3297
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519387383007172e-5
allele num: 65816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.03e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

DP
type: SiteQuality
SIO_000300: 2.295678e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.247e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

QD
type: SiteQuality
SIO_000300: 1.452e1

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 2822
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169317118802619e-4
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.858e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

VQSLOD
type: SiteQuality
SIO_000300: 2.66e-1

QD
type: SiteQuality
SIO_000300: 1.561e1

MQRankSum
type: SiteQuality
SIO_000300: -2.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

DP
type: SiteQuality
SIO_000300: 2.296453e6

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18072
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2100
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6898
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variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.036836830757083e-5
allele num: 65858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.52e-1

FS
type: SiteQuality
SIO_000300: 1.596e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.32e-1

QD
type: SiteQuality
SIO_000300: 1.552e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
SIO_000300: 2.297047e6

GenotypeQuality
all individuals: 20856
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 2824
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3465
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.553181155900923e-5
allele num: 65888
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

DP
type: SiteQuality
SIO_000300: 2.298016e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.568e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-2

FS
type: SiteQuality
SIO_000300: 7.88e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
SIO_000300: 1.835e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.44e-2

GenotypeQuality
all individuals: 609
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18070
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3465
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517542794706811e-5
allele num: 65896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.132e1

MQ
type: SiteQuality
SIO_000300: 5.916e1

FS
type: SiteQuality
SIO_000300: 5.572e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.269e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-2

DP
type: SiteQuality
SIO_000300: 2.298253e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.069e0

GenotypeQuality
all individuals: 151
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 13

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2826
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20915
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.971429437990962e-4
allele num: 65942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 2.300106e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.357e1

VQSLOD
type: SiteQuality
SIO_000300: 2.18e0

FS
type: SiteQuality
SIO_000300: 1.138e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 6927
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516530178950561e-5
allele num: 65940
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.238e1

DP
type: SiteQuality
SIO_000300: 2.299423e6

VQSLOD
type: SiteQuality
SIO_000300: -1.494e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

FS
type: SiteQuality
SIO_000300: 3.715e0

MQ
type: SiteQuality
SIO_000300: 5.737e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.802e0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3292
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 18254
bin: 9.75e1
variant carriers: 256

GenotypeQuality
all individuals: 20864
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GenotypeQuality
all individuals: 1674
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.257336343115124e-3
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.491010647582475e-4
allele num: 11458
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.054185114906177e-4
allele num: 9486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 121
allele frequency: 1.833555582494848e-3
allele num: 65992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 130
allele frequency: 7.913318724129535e-3
allele num: 16428
num of homozygotes: 2

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 2.316882e6

QD
type: SiteQuality
SIO_000300: 1.453e1

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e0

VQSLOD
type: SiteQuality
SIO_000300: 5.83e0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
all individuals: 75
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GenotypeQuality
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GenotypeQuality
all individuals: 38
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GenotypeQuality
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GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 3309
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GenotypeQuality
all individuals: 3472
bin: 7.75e1
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GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

FS
type: SiteQuality
SIO_000300: 6.36e0

DP
type: SiteQuality
SIO_000300: 2.30079e6

QD
type: SiteQuality
SIO_000300: 1.266e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20957
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2104
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3309
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6946
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2835
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.030670384289005e-5
allele num: 65992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

QD
type: SiteQuality
SIO_000300: 1.266e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.43e-1

DP
type: SiteQuality
SIO_000300: 2.30079e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2835
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3309
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6950
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20980
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18067
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514921981517952e-5
allele num: 66010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.5e-1

FS
type: SiteQuality
SIO_000300: 2.303e0

MQ
type: SiteQuality
SIO_000300: 5.788e1

DP
type: SiteQuality
SIO_000300: 2.300866e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

QD
type: SiteQuality
SIO_000300: 1.682e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.355e0

MQRankSum
type: SiteQuality
SIO_000300: -1.83e-1

GenotypeQuality
all individuals: 1680
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3309
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 18068
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6951
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3470
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.085686465433301e-5
allele num: 16432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

DP
type: SiteQuality
SIO_000300: 2.301072e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 2.825e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.75e-1

QD
type: SiteQuality
SIO_000300: 1.698e1

MQRankSum
type: SiteQuality
SIO_000300: -1.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.73e-1

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3471
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3308
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20976
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variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6954
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18070
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1680
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.500583430571762e-4
allele num: 8570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66024
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.217e0

DP
type: SiteQuality
SIO_000300: 2.301274e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

QD
type: SiteQuality
SIO_000300: 1.457e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.319e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: -5.337e-1

GenotypeQuality
all individuals: 18146
bin: 9.75e1
variant carriers: 107

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3304
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2827
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6939
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.128668171557562e-3
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.133786848072562e-3
allele num: 11466
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.43427458617332e-4
allele num: 16432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 86
allele frequency: 1.30239883692755e-3
allele num: 66032
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.158559696778269e-4
allele num: 9498
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.38e-1

DP
type: SiteQuality
SIO_000300: 2.309378e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.279e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

GenotypeQuality
all individuals: 126
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2837
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 20961
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3475
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6951
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514325519413653e-5
allele num: 66036
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.769e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.28e0

QD
type: SiteQuality
SIO_000300: 2.004e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-1

DP
type: SiteQuality
SIO_000300: 2.30166e6

FS
type: SiteQuality
SIO_000300: 5.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

GenotypeQuality
all individuals: 2106
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3310
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 20980
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
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variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18087
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6952
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2835
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514142087093453e-5
allele num: 66044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

DP
type: SiteQuality
SIO_000300: 2.302031e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.4e-1

FS
type: SiteQuality
SIO_000300: 1.906e0

VQSLOD
type: SiteQuality
SIO_000300: 6.66e-1

QD
type: SiteQuality
SIO_000300: 1.41e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 125
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3310
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2835
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6952
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20980
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3475
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.724480893386844e-5
allele num: 11462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66044
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.906e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.66e-1

DP
type: SiteQuality
SIO_000300: 2.302031e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 1.41e1

MQ
type: SiteQuality
SIO_000300: 5.986e1

GenotypeQuality
all individuals: 119
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20982
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2838
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18088
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2104
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.722958827634333e-5
allele num: 11464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.028009084027252e-5
allele num: 66050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 1.051082615093546e-4
allele num: 9514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.367e1

MQRankSum
type: SiteQuality
SIO_000300: 7.07e-1

DP
type: SiteQuality
SIO_000300: 2.302259e6

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.625e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.027275754548482e-5
allele num: 66066
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9522
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 5.36e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

DP
type: SiteQuality
SIO_000300: 2.302519e6

ClippingRankSum
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SIO_000300: -6.16e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 7.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.084205402774397e-5
allele num: 16436
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.866e0

MQ
type: SiteQuality
SIO_000300: 5.833e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

DP
type: SiteQuality
SIO_000300: 2.302594e6

QD
type: SiteQuality
SIO_000300: 1.088e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.048691970361409e-5
allele num: 66130
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.524e1

FS
type: SiteQuality
SIO_000300: 1.118e0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.19e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

DP
type: SiteQuality
SIO_000300: 2.304073e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.024071610015725e-5
allele num: 66136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

FS
type: SiteQuality
SIO_000300: 1.259e0

QD
type: SiteQuality
SIO_000300: 1.085e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.216e0

DP
type: SiteQuality
SIO_000300: 2.304219e6

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.67e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.082725060827251e-5
allele num: 16440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8578
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.533228565384267e-5
allele num: 66178
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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Other
type: Population
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QD
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
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MQ
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 4.257389611969347e-4
allele num: 16442
num of homozygotes: 0

East Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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ReadPosRankSum
type: SiteQuality
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FS
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BaseQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Other
type: Population
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European (Non-Finnish)
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allele num: 66208
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East Asian
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European (Finnish)
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Latino
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MQ
type: SiteQuality
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ReadPosRankSum
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QD
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MQRankSum
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InbreedingCoeff
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DP
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FS
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.164217401446233e-4
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.040471156750227e-5
allele num: 66220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.32e-1

FS
type: SiteQuality
SIO_000300: 5.2e-1

QD
type: SiteQuality
SIO_000300: 1.362e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.28e0

MQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 2.306366e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.82e-1

GenotypeQuality
all individuals: 2111
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3476
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18087
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 55
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6972
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019050206804939e-5
allele num: 66246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.54e-1

DP
type: SiteQuality
SIO_000300: 2.305838e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.33e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 1.172e1

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3307
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2847
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6963
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.703220191470844e-5
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66254
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.305721e6

MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.156e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 5.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

QD
type: SiteQuality
SIO_000300: 1.058e1

VQSLOD
type: SiteQuality
SIO_000300: 5.34e-1

GenotypeQuality
all individuals: 6957
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 449
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variant carriers: 0

GenotypeQuality
all individuals: 92
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variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3306
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1683
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variant carriers: 0

GenotypeQuality
all individuals: 3480
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18092
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2846
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.543526145861622e-5
allele num: 66282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9618
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 2.306621e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 1.17e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21147
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3479
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3306
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
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variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1684
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.079766536964981e-5
allele num: 16448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.306178e6

VQSLOD
type: SiteQuality
SIO_000300: 8.169999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

FS
type: SiteQuality
SIO_000300: 5.678e0

MQRankSum
type: SiteQuality
SIO_000300: 8.92e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

QD
type: SiteQuality
SIO_000300: 1.298e1

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1684
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6954
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18090
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3481
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2850
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3311
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66308
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164686699277894e-4
allele num: 8586
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.86e-1

DP
type: SiteQuality
SIO_000300: 2.306606e6

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-1

FS
type: SiteQuality
SIO_000300: 8.138999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.808e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.25e-1

QD
type: SiteQuality
SIO_000300: 1.398e1

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21196
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variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6951
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variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2850
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3480
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18090
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1684
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3307
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.078288353999514e-5
allele num: 16452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.18e-1

QD
type: SiteQuality
SIO_000300: 1.641e1

DP
type: SiteQuality
SIO_000300: 2.306685e6

FS
type: SiteQuality
SIO_000300: 6.07e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
all individuals: 18090
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3482
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2848
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21197
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9648
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.306709e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.88e0

QD
type: SiteQuality
SIO_000300: 1.457e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2847
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21172
bin: 6.25e1
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GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 3303
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506477854775535e-5
allele num: 66380
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.070393374741201e-4
allele num: 9660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.98e-1

DP
type: SiteQuality
SIO_000300: 2.307137e6

MQ
type: SiteQuality
SIO_000300: 5.949e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e0

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 8.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.37e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

GenotypeQuality
all individuals: 6941
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
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GenotypeQuality
all individuals: 21106
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3469
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2841
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18217
bin: 9.75e1
variant carriers: 170

GenotypeQuality
all individuals: 1678
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2100
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66398
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele count: 166
allele frequency: 1.931580172213172e-2
allele num: 8594
num of homozygotes: 3

African
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allele count: 2
allele frequency: 2.066115702479339e-4
allele num: 9680
num of homozygotes: 0

South Asian
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allele count: 5
allele frequency: 3.037298019681691e-4
allele num: 16462
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.03e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.51e0

QD
type: SiteQuality
SIO_000300: 1.384e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.64e-1

DP
type: SiteQuality
SIO_000300: 2.320399e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506069459923492e-5
allele num: 66398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.51e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

ClippingRankSum
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SIO_000300: -2.64e-1

FS
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SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.03e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

ReadPosRankSum
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SIO_000300: 5.77e-1

QD
type: SiteQuality
SIO_000300: 1.384e1

DP
type: SiteQuality
SIO_000300: 2.320399e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506024096385542e-5
allele num: 66400
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.915e0

DP
type: SiteQuality
SIO_000300: 2.307701e6

FS
type: SiteQuality
SIO_000300: 1.572e0

VQSLOD
type: SiteQuality
SIO_000300: 5.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-3

MQ
type: SiteQuality
SIO_000300: 5.933e1

MQRankSum
type: SiteQuality
SIO_000300: 9.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

QD
type: SiteQuality
SIO_000300: 1.092e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505797319680771e-5
allele num: 66410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.307632e6

QD
type: SiteQuality
SIO_000300: 1.421e1

FS
type: SiteQuality
SIO_000300: 9.648e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.598e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.169e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.26e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.27e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3480
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variant carriers: 0

GenotypeQuality
all individuals: 2114
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505797319680771e-5
allele num: 66410
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.783e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 2.307656e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.983e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.832e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 23

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 3.462603878116343e-4
allele num: 66424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.474e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 2.309579e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.030502885408079e-4
allele num: 9704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.08e-1

DP
type: SiteQuality
SIO_000300: 2.307857e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: 9.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.34e-1

QD
type: SiteQuality
SIO_000300: 1.612e1

MQ
type: SiteQuality
SIO_000300: 5.989e1

FS
type: SiteQuality
SIO_000300: 4.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.18e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
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East Asian
type: Population
allele count: 1
allele frequency: 1.16333178222429e-4
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66446
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 896
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

MQRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.73e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.712319219376198e-5
allele num: 11478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66446
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-2

DP
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

FS
type: SiteQuality
SIO_000300: 1.3464e1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.257e1

MQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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