1-109823814-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823814
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823814
    reference: chr 1
allele count: 2
allele frequency: 1.827485380116959e-5
allele num: 109440
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.579C>T
  hgvsp: ENST00000369904.3:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.579C>T
  hgvsp: ENST00000369909.2:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.579C>T
  hgvsp: ENST00000409267.1:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.579C>T
  hgvsp: ENST00000409138.2:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.579C>T
  hgvsp: ENST00000369907.3:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.579C>T
  hgvsp: ENST00000418914.2:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.579C>T
  hgvsp: ENST00000369903.2:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.121C>T
  hgvsp: ENST00000474126.2:c.121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.579C>T
  hgvsp: ENST00000429031.1:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.579C>T
  hgvsp: ENST00000438534.2:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.861C>T
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29013
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr193Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-109823815-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823815
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823815
    reference: chr 1
allele count: 1
allele frequency: 9.136759008844382e-6
allele num: 109448
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.578C>A
  hgvsp: ENSP00000413186.2:p.Thr193Asn
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.578C>A
  hgvsp: ENSP00000387791.1:p.Thr193Asn
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.120C>A
  hgvsp: ENSP00000474682.1:p.Thr41Asn
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.578C>A
  hgvsp: ENSP00000358923.3:p.Thr193Asn
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.578C>A
  hgvsp: ENSP00000358920.3:p.Thr193Asn
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.578C>A
  hgvsp: ENSP00000413591.2:p.Thr193Asn
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.578C>A
  hgvsp: ENSP00000474667.1:p.Thr193Asn
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.578C>A
  hgvsp: ENSP00000386323.1:p.Thr193Asn
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.578C>A
  hgvsp: ENSP00000358919.2:p.Thr193Asn
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.578C>A
  hgvsp: ENSP00000358925.2:p.Thr193Asn
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.860C>A
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr193Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

1-109823819-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823819
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823819
    reference: chr 1
allele count: 1
allele frequency: 9.159354448698456e-6
allele num: 109178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.574C>T
  hgvsp: ENSP00000386323.1:p.Leu192Phe
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.116C>T
  hgvsp: ENSP00000474682.1:p.Leu40Phe
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.856C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.574C>T
  hgvsp: ENSP00000413591.2:p.Leu192Phe
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.574C>T
  hgvsp: ENSP00000358920.3:p.Leu192Phe
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.574C>T
  hgvsp: ENSP00000387791.1:p.Leu192Phe
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.574C>T
  hgvsp: ENSP00000413186.2:p.Leu192Phe
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.574C>T
  hgvsp: ENSP00000358925.2:p.Leu192Phe
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.574C>T
  hgvsp: ENSP00000358919.2:p.Leu192Phe
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.574C>T
  hgvsp: ENSP00000474667.1:p.Leu192Phe
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.574C>T
  hgvsp: ENSP00000358923.3:p.Leu192Phe
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5877
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu192Phe
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

1-109823820-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823820
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823820
    reference: chr 1
allele count: 1
allele frequency: 9.179027757379938e-6
allele num: 108944
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.573T>A
  hgvsp: ENST00000409267.1:c.573T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.573T>A
  hgvsp: ENST00000369903.2:c.573T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.573T>A
  hgvsp: ENST00000369907.3:c.573T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.573T>A
  hgvsp: ENST00000418914.2:c.573T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.115T>A
  hgvsp: ENST00000474126.2:c.115T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.573T>A
  hgvsp: ENST00000438534.2:c.573T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.573T>A
  hgvsp: ENST00000409138.2:c.573T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.573T>A
  hgvsp: ENST00000429031.1:c.573T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.573T>A
  hgvsp: ENST00000369909.2:c.573T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.855T>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.573T>A
  hgvsp: ENST00000369904.3:c.573T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro191Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

1-109823834-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823834
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823834
    reference: chr 1
allele count: 5
allele frequency: 4.720989519403267e-5
allele num: 105910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.559C>A
  hgvsp: ENSP00000386323.1:p.Pro187Thr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.559C>A
  hgvsp: ENSP00000474667.1:p.Pro187Thr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.559C>A
  hgvsp: ENSP00000413591.2:p.Pro187Thr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.559C>A
  hgvsp: ENSP00000387791.1:p.Pro187Thr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.559C>A
  hgvsp: ENSP00000413186.2:p.Pro187Thr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.841C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.559C>A
  hgvsp: ENSP00000358925.2:p.Pro187Thr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.559C>A
  hgvsp: ENSP00000358919.2:p.Pro187Thr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.559C>A
  hgvsp: ENSP00000358923.3:p.Pro187Thr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.559C>A
  hgvsp: ENSP00000358920.3:p.Pro187Thr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.101C>A
  hgvsp: ENSP00000474682.1:p.Pro35Thr
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27764
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro187Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

1-109823842-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823842
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823842
    reference: chr 1
allele count: 1
allele frequency: 9.716662132224337e-6
allele num: 102916
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.551C>T
  hgvsp: ENSP00000386323.1:p.Ser184Phe
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.551C>T
  hgvsp: ENSP00000358925.2:p.Ser184Phe
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.833C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.551C>T
  hgvsp: ENSP00000358923.3:p.Ser184Phe
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.551C>T
  hgvsp: ENSP00000413591.2:p.Ser184Phe
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.551C>T
  hgvsp: ENSP00000387791.1:p.Ser184Phe
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.551C>T
  hgvsp: ENSP00000358920.3:p.Ser184Phe
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.551C>T
  hgvsp: ENSP00000413186.2:p.Ser184Phe
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.551C>T
  hgvsp: ENSP00000358919.2:p.Ser184Phe
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.93C>T
  hgvsp: ENSP00000474682.1:p.Ser32Phe
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.551C>T
  hgvsp: ENSP00000474667.1:p.Ser184Phe
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8847
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser184Phe
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

1-109823845-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823845
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823845
    reference: chr 1
allele count: 2
allele frequency: 1.975503753457132e-5
allele num: 101240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.548C>T
  hgvsp: ENSP00000474667.1:p.Ala183Val
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.548C>T
  hgvsp: ENSP00000358923.3:p.Ala183Val
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.830C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.548C>T
  hgvsp: ENSP00000387791.1:p.Ala183Val
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.90C>T
  hgvsp: ENSP00000474682.1:p.Ala31Val
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.548C>T
  hgvsp: ENSP00000358920.3:p.Ala183Val
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.548C>T
  hgvsp: ENSP00000358919.2:p.Ala183Val
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.548C>T
  hgvsp: ENSP00000386323.1:p.Ala183Val
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.548C>T
  hgvsp: ENSP00000413186.2:p.Ala183Val
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.548C>T
  hgvsp: ENSP00000358925.2:p.Ala183Val
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.548C>T
  hgvsp: ENSP00000413591.2:p.Ala183Val
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24302
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala183Val
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

1-109823845-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823845
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823845
    reference: chr 1
allele count: 21
allele frequency: 2.074278941129988e-4
allele num: 101240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.548C>A
  hgvsp: ENSP00000413591.2:p.Ala183Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.548C>A
  hgvsp: ENSP00000413186.2:p.Ala183Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.548C>A
  hgvsp: ENSP00000358923.3:p.Ala183Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.90C>A
  hgvsp: ENSP00000474682.1:p.Ala31Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.548C>A
  hgvsp: ENSP00000386323.1:p.Ala183Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.548C>A
  hgvsp: ENSP00000358919.2:p.Ala183Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.548C>A
  hgvsp: ENSP00000387791.1:p.Ala183Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.830C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.548C>A
  hgvsp: ENSP00000358920.3:p.Ala183Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.548C>A
  hgvsp: ENSP00000474667.1:p.Ala183Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.548C>A
  hgvsp: ENSP00000358925.2:p.Ala183Glu
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13016
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9614
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9023
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24302
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala183Glu
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/1-109823847-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823847
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823847
    reference: chr 1
allele count: 1
allele frequency: 9.921619208254787e-6
allele num: 100790
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.546T>G
  hgvsp: ENST00000369909.2:c.546T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.828T>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.88T>G
  hgvsp: ENST00000474126.2:c.88T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.546T>G
  hgvsp: ENST00000409138.2:c.546T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.546T>G
  hgvsp: ENST00000429031.1:c.546T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.546T>G
  hgvsp: ENST00000418914.2:c.546T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.546T>G
  hgvsp: ENST00000369907.3:c.546T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.546T>G
  hgvsp: ENST00000369903.2:c.546T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.546T>G
  hgvsp: ENST00000438534.2:c.546T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.546T>G
  hgvsp: ENST00000369904.3:c.546T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.546T>G
  hgvsp: ENST00000409267.1:c.546T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9267
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro182Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

1-109823849-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823849
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823849
    reference: chr 1
allele count: 2
allele frequency: 2.023840845155937e-5
allele num: 98822
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.544C>T
  hgvsp: ENSP00000358925.2:p.Pro182Ser
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.544C>T
  hgvsp: ENSP00000413186.2:p.Pro182Ser
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.544C>T
  hgvsp: ENSP00000358919.2:p.Pro182Ser
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.544C>T
  hgvsp: ENSP00000474667.1:p.Pro182Ser
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.826C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.544C>T
  hgvsp: ENSP00000358923.3:p.Pro182Ser
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.544C>T
  hgvsp: ENSP00000387791.1:p.Pro182Ser
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.544C>T
  hgvsp: ENSP00000358920.3:p.Pro182Ser
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.544C>T
  hgvsp: ENSP00000386323.1:p.Pro182Ser
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.86C>T
  hgvsp: ENSP00000474682.1:p.Pro30Ser
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.544C>T
  hgvsp: ENSP00000413591.2:p.Pro182Ser
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12488
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro182Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

1-109823850-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823850
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823850
    reference: chr 1
allele count: 1
allele frequency: 1.013335495115723e-5
allele num: 98684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.543C>T
  hgvsp: ENST00000369907.3:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.543C>T
  hgvsp: ENST00000369904.3:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.825C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.543C>T
  hgvsp: ENST00000409267.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.543C>T
  hgvsp: ENST00000418914.2:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.543C>T
  hgvsp: ENST00000438534.2:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.543C>T
  hgvsp: ENST00000369903.2:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.85C>T
  hgvsp: ENST00000474126.2:c.85C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.543C>T
  hgvsp: ENST00000429031.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.543C>T
  hgvsp: ENST00000369909.2:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.543C>T
  hgvsp: ENST00000409138.2:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22315
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe181Phe
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

1-109823856-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823856
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823856
    reference: chr 1
allele count: 6
allele frequency: 6.297890206780728e-5
allele num: 95270
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.537T>C
  hgvsp: ENST00000409267.1:c.537T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.537T>C
  hgvsp: ENST00000429031.1:c.537T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.819T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.537T>C
  hgvsp: ENST00000369904.3:c.537T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.537T>C
  hgvsp: ENST00000369903.2:c.537T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.537T>C
  hgvsp: ENST00000409138.2:c.537T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.537T>C
  hgvsp: ENST00000418914.2:c.537T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.537T>C
  hgvsp: ENST00000438534.2:c.537T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.537T>C
  hgvsp: ENST00000369909.2:c.537T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.537T>C
  hgvsp: ENST00000369907.3:c.537T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.79T>C
  hgvsp: ENST00000474126.2:c.79T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11406
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn179Asn
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ

1-109823858-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823858
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823858
    reference: chr 1
allele count: 1
allele frequency: 1.083306250677066e-5
allele num: 92310
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.535A>T
  hgvsp: ENSP00000358925.2:p.Asn179Tyr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.535A>T
  hgvsp: ENSP00000358919.2:p.Asn179Tyr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.535A>T
  hgvsp: ENSP00000358923.3:p.Asn179Tyr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.77A>T
  hgvsp: ENSP00000474682.1:p.Asn27Tyr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.535A>T
  hgvsp: ENSP00000387791.1:p.Asn179Tyr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.535A>T
  hgvsp: ENSP00000413186.2:p.Asn179Tyr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.535A>T
  hgvsp: ENSP00000358920.3:p.Asn179Tyr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.817A>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.535A>T
  hgvsp: ENSP00000386323.1:p.Asn179Tyr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.535A>T
  hgvsp: ENSP00000474667.1:p.Asn179Tyr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.535A>T
  hgvsp: ENSP00000413591.2:p.Asn179Tyr
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17371
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn179Tyr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

1-109823860-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823860
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823860
    reference: chr 1
allele count: 1
allele frequency: 1.089585739501841e-5
allele num: 91778
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.533G>A
  hgvsp: ENSP00000474667.1:p.Cys178Tyr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.75G>A
  hgvsp: ENSP00000474682.1:p.Cys26Tyr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.533G>A
  hgvsp: ENSP00000358920.3:p.Cys178Tyr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.533G>A
  hgvsp: ENSP00000386323.1:p.Cys178Tyr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.815G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.533G>A
  hgvsp: ENSP00000387791.1:p.Cys178Tyr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.533G>A
  hgvsp: ENSP00000413186.2:p.Cys178Tyr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.533G>A
  hgvsp: ENSP00000358919.2:p.Cys178Tyr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.533G>A
  hgvsp: ENSP00000358923.3:p.Cys178Tyr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.533G>A
  hgvsp: ENSP00000413591.2:p.Cys178Tyr
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.533G>A
  hgvsp: ENSP00000358925.2:p.Cys178Tyr
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13756
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10252
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13998
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys178Tyr
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD

1-109823865-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823865
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823865
    reference: chr 1
allele count: 3
allele frequency: 3.404139433551199e-5
allele num: 88128
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.810C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.528C>A
  hgvsp: ENST00000409267.1:c.528C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.528C>A
  hgvsp: ENST00000438534.2:c.528C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.528C>A
  hgvsp: ENST00000369907.3:c.528C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.528C>A
  hgvsp: ENST00000429031.1:c.528C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.528C>A
  hgvsp: ENST00000369904.3:c.528C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.528C>A
  hgvsp: ENST00000418914.2:c.528C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.528C>A
  hgvsp: ENST00000369903.2:c.528C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.528C>A
  hgvsp: ENST00000369909.2:c.528C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.70C>A
  hgvsp: ENST00000474126.2:c.70C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.528C>A
  hgvsp: ENST00000409138.2:c.528C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16026
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8985
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro176Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

1-109823874-C-CCTCTTCATGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823874
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823884
    reference: chr 1
allele count: 2
allele frequency: 2.517496601379588e-5
allele num: 79444
alternate allele: CCTCTTCATGT
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: splice acceptor
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19987
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14367
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 7.5e0
  variant carriers: 0
hgvs: c.520-2_520-1insACATGAAGAG
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

1-109823874-C-CCTCTTCATGTTGGAGGGCCTCTTTCCAGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823874
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823903
    reference: chr 1
allele count: 1
allele frequency: 1.258748300689794e-5
allele num: 79444
alternate allele: CCTCTTCATGTTGGAGGGCCTCTTTCCAGA
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: splice acceptor
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 9313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19987
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6645
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14367
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

1-109823877-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823877
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823877
    reference: chr 1
allele count: 1
allele frequency: 1.340087373696765e-5
allele num: 74622
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.520-4T>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.520-4T>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.520-4T>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.520-4T>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.520-4T>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.520-4T>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.802-4T>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.62-4T>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.520-4T>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.520-4T>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.520-4T>A
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.520-4T>A
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

1-109823879-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823879
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823879
    reference: chr 1
allele count: 1
allele frequency: 1.388233334258822e-5
allele num: 72034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.520-6T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.802-6T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.520-6T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.520-6T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.520-6T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.520-6T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.520-6T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.520-6T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.520-6T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.520-6T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.62-6T>C
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.520-6T>C
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-109823882-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823882
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823882
    reference: chr 1
allele count: 1
allele frequency: 1.450662952969507e-5
allele num: 68934
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.520-9G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.520-9G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.520-9G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.520-9G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.802-9G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.520-9G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.520-9G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.520-9G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.520-9G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.520-9G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.62-9G>T
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

1-109823882-CAAAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823882
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823878
    reference: chr 1
allele count: 4
allele frequency: 5.802651811878028e-5
allele num: 68934
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.520-13_520-10delCTTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.520-13_520-10delCTTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.62-13_62-10delCTTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.520-13_520-10delCTTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.520-13_520-10delCTTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.520-13_520-10delCTTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.520-13_520-10delCTTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.520-13_520-10delCTTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.520-13_520-10delCTTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.802-13_802-10delCTTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.520-13_520-10delCTTT
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22820
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21344
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3046
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: CAAAG
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

1-109823884-AAGAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823884
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823880
    reference: chr 1
allele count: 1
allele frequency: 1.511532996765319e-5
allele num: 66158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.520-15_520-12delCTCT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.62-15_62-12delCTCT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.520-15_520-12delCTCT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.520-15_520-12delCTCT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.520-15_520-12delCTCT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.802-15_802-12delCTCT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.520-15_520-12delCTCT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.520-15_520-12delCTCT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.520-15_520-12delCTCT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.520-15_520-12delCTCT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.520-15_520-12delCTCT
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4647
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21960
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: AAGAG
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

1-109823888-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823888
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823888
    reference: chr 1
allele count: 10
allele frequency: 1.59821000479463e-4
allele num: 62570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.520-15C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.520-15C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.520-15C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.802-15C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.520-15C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.62-15C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.520-15C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.520-15C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.520-15C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.520-15C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.520-15C>A
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22927
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22906
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5845
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2308
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

1-109823893-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823893
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823894
    reference: chr 1
allele count: 1
allele frequency: 1.741250217656277e-5
allele num: 57430
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.62-21dupC
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.520-21dupC
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.520-21dupC
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.520-21dupC
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.802-21dupC
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.520-21dupC
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.520-21dupC
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.520-21dupC
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.520-21dupC
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.520-21dupC
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.520-21dupC
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7838
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8611
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

1-109823894-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823894
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823893
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 55560
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.520-22delT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.62-22delT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.520-22delT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.802-22delT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.520-22delT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.520-22delT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.520-22delT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.520-22delT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.520-22delT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.520-22delT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.520-22delT
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23449
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: GA
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-109823894-GAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823894
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823892
    reference: chr 1
allele count: 1
allele frequency: 1.799856011519078e-5
allele num: 55560
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.520-23_520-22delTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.520-23_520-22delTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.520-23_520-22delTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.520-23_520-22delTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.802-23_802-22delTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.520-23_520-22delTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.520-23_520-22delTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.520-23_520-22delTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.62-23_62-22delTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.520-23_520-22delTT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.520-23_520-22delTT
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9214
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: GAA
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

1-109823897-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823897
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823897
    reference: chr 1
allele count: 1
allele frequency: 1.971064769188315e-5
allele num: 50734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.520-24T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.520-24T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.62-24T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.520-24T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.802-24T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.520-24T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.520-24T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.520-24T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.520-24T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.520-24T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.520-24T>C
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

1-109823911-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823911
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823911
    reference: chr 1
allele count: 1
allele frequency: 2.902420618796076e-5
allele num: 34454
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.520-38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.520-38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.62-38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.520-38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.520-38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.520-38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.520-38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.520-38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.520-38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.802-38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.520-38C>T
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13679
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14838
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

1-109823911-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109823911
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109823912
    reference: chr 1
allele count: 2
allele frequency: 5.804841237592152e-5
allele num: 34454
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.520-39dupT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.520-39dupT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.802-39dupT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.520-39dupT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.520-39dupT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.520-39dupT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.520-39dupT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.62-39dupT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.520-39dupT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.520-39dupT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.520-39dupT
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27234
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14838
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13679
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24082
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-109824193-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824193
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824193
    reference: chr 1
allele count: 1
allele frequency: 8.967805577975069e-6
allele num: 111510
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.519+48G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.519+48G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.519+48G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.801+48G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.519+48G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.519+48G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.672G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.519+48G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.519+48G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.61+48G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.519+48G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.519+48G>T
  variant of: http://identifiers.org/hgnc/24472
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-109824193-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824193
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824193
    reference: chr 1
allele count: 1
allele frequency: 8.967805577975069e-6
allele num: 111510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.519+48G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.519+48G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.519+48G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.61+48G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.519+48G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.519+48G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.672G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.519+48G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.519+48G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.519+48G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.801+48G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.519+48G>A
  variant of: http://identifiers.org/hgnc/24472
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

1-109824201-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824201
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824201
    reference: chr 1
allele count: 2
allele frequency: 1.790606478414239e-5
allele num: 111694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.61+40T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.519+40T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.519+40T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.519+40T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.664T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.519+40T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.519+40T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.519+40T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.801+40T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.519+40T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.519+40T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.519+40T>C
  variant of: http://identifiers.org/hgnc/24472
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

1-109824203-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824203
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824203
    reference: chr 1
allele count: 1
allele frequency: 8.950628334109055e-6
allele num: 111724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.519+38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.61+38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.519+38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.519+38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.519+38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.519+38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.801+38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.662C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.519+38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.519+38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.519+38C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.519+38C>T
  variant of: http://identifiers.org/hgnc/24472
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

1-109824217-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824217
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824217
    reference: chr 1
allele count: 1
allele frequency: 8.897272096375252e-6
allele num: 112394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.519+24A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.519+24A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.519+24A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.519+24A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.519+24A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.519+24A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.61+24A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.648A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.519+24A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.519+24A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.801+24A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.519+24A>G
  variant of: http://identifiers.org/hgnc/24472
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24474
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

1-109824227-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824227
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824227
    reference: chr 1
allele count: 1
allele frequency: 8.839075786235792e-6
allele num: 113134
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.519+14G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.519+14G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.519+14G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.638G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.519+14G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.801+14G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.519+14G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.519+14G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.519+14G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.519+14G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.519+14G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.61+14G>A
  variant of: http://identifiers.org/hgnc/24472
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

1-109824228-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824228
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824228
    reference: chr 1
allele count: 5
allele frequency: 4.415244957790258e-5
allele num: 113244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.519+13A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.519+13A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.801+13A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.61+13A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.637A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.519+13A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.519+13A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.519+13A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.519+13A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.519+13A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.519+13A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.519+13A>G
  variant of: http://identifiers.org/hgnc/24472
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-109824228-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824228
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824228
    reference: chr 1
allele count: 1
allele frequency: 8.830489915580516e-6
allele num: 113244
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.519+13A>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.519+13A>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.519+13A>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.519+13A>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.519+13A>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.61+13A>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.637A>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.519+13A>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.519+13A>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.801+13A>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.519+13A>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.519+13A>C
  variant of: http://identifiers.org/hgnc/24472
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

1-109824229-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824229
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824229
    reference: chr 1
allele count: 11
allele frequency: 9.710109106316867e-5
allele num: 113284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.519+12G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.519+12G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.519+12G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.519+12G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.519+12G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.61+12G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.519+12G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.636G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.519+12G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.519+12G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.801+12G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.519+12G>A
  variant of: http://identifiers.org/hgnc/24472
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

1-109824238-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824238
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824238
    reference: chr 1
allele count: 1
allele frequency: 8.739578053171594e-6
allele num: 114422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.519+3G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.519+3G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.519+3G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.519+3G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.801+3G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.519+3G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.627G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.519+3G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.519+3G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.519+3G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.61+3G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.519+3G>A
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.519+3G>A
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

1-109824240-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824240
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824240
    reference: chr 1
allele count: 3
allele frequency: 2.615153945395585e-5
allele num: 114716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.801+1G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.519+1G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.61+1G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.519+1G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.519+1G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.519+1G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.519+1G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.519+1G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.519+1G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.519+1G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.625G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.519+1G>A
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9799
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.519+1G>A
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

1-109824241-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824241
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824241
    reference: chr 1
allele count: 3
allele frequency: 2.611375150154071e-5
allele num: 114882
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.519G>A
  hgvsp: ENST00000369903.2:c.519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.61G>A
  hgvsp: ENST00000474126.2:c.61G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.624G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.519G>A
  hgvsp: ENST00000409267.1:c.519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.801G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.519G>A
  hgvsp: ENST00000429031.1:c.519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.519G>A
  hgvsp: ENST00000369907.3:c.519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.519G>A
  hgvsp: ENST00000369904.3:c.519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.519G>A
  hgvsp: ENST00000438534.2:c.519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.519G>A
  hgvsp: ENST00000418914.2:c.519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.519G>A
  hgvsp: ENST00000409138.2:c.519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.519G>A
  hgvsp: ENST00000369909.2:c.519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.738G>A
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.519G>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS

1-109824249-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824249
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824249
    reference: chr 1
allele count: 2
allele frequency: 1.72114077210375e-5
allele num: 116202
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.511A>G
  hgvsp: ENSP00000358925.2:p.Met171Val
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.511A>G
  hgvsp: ENSP00000387791.1:p.Met171Val
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.511A>G
  hgvsp: ENSP00000474667.1:p.Met171Val
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.616A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.511A>G
  hgvsp: ENSP00000386323.1:p.Met171Val
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.793A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.53A>G
  hgvsp: ENSP00000474682.1:p.Met19Val
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.511A>G
  hgvsp: ENSP00000358920.3:p.Met171Val
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.511A>G
  hgvsp: ENSP00000358919.2:p.Met171Val
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.511A>G
  hgvsp: ENSP00000413591.2:p.Met171Val
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.511A>G
  hgvsp: ENSP00000413186.2:p.Met171Val
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.730A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.511A>G
  hgvsp: ENSP00000358923.3:p.Met171Val
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10706
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met171Val
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

1-109824250-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824250
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824250
    reference: chr 1
allele count: 7987
allele frequency: 6.844631073785243e-2
allele num: 116690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.510C>T
  hgvsp: ENST00000369903.2:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.510C>T
  hgvsp: ENST00000409267.1:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.510C>T
  hgvsp: ENST00000369907.3:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.510C>T
  hgvsp: ENST00000409138.2:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.510C>T
  hgvsp: ENST00000369909.2:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.510C>T
  hgvsp: ENST00000369904.3:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.510C>T
  hgvsp: ENST00000438534.2:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.510C>T
  hgvsp: ENST00000418914.2:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.729C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.52C>T
  hgvsp: ENST00000474126.2:c.52C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.510C>T
  hgvsp: ENST00000429031.1:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.792C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.615C>T
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.25e1
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 284
genotype depth: GenotypeDepth
  all individuals: 10639
  bin: 2.25e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 24980
  bin: 2.75e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 9.25e1
  variant carriers: 453
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 3.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 4786
  bin: 9.75e1
  variant carriers: 4547
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 1.25e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.75e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
hgvs: p.Asn170Asn
num of homozygotes: 373
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

1-109824256-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824256
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824256
    reference: chr 1
allele count: 14
allele frequency: 1.192504258943782e-4
allele num: 117400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.504C>T
  hgvsp: ENST00000438534.2:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.609C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.504C>T
  hgvsp: ENST00000369909.2:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.504C>T
  hgvsp: ENST00000429031.1:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.504C>T
  hgvsp: ENST00000409138.2:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.504C>T
  hgvsp: ENST00000409267.1:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.504C>T
  hgvsp: ENST00000369903.2:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.46C>T
  hgvsp: ENST00000474126.2:c.46C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.504C>T
  hgvsp: ENST00000369904.3:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.504C>T
  hgvsp: ENST00000369907.3:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.723C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.786C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.504C>T
  hgvsp: ENST00000418914.2:c.504C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12075
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro168Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

1-109824262-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824262
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824262
    reference: chr 1
allele count: 2
allele frequency: 1.693594824374217e-5
allele num: 118092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.498G>A
  hgvsp: ENST00000409267.1:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.498G>A
  hgvsp: ENST00000429031.1:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.498G>A
  hgvsp: ENST00000369907.3:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.780G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.498G>A
  hgvsp: ENST00000409138.2:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.498G>A
  hgvsp: ENST00000369904.3:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.498G>A
  hgvsp: ENST00000369903.2:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.498G>A
  hgvsp: ENST00000369909.2:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.603G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.717G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.498G>A
  hgvsp: ENST00000418914.2:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.498G>A
  hgvsp: ENST00000438534.2:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.40G>A
  hgvsp: ENST00000474126.2:c.40G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys166Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-109824265-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824265
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824265
    reference: chr 1
allele count: 1
allele frequency: 8.447943770486263e-6
allele num: 118372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.495A>G
  hgvsp: ENST00000418914.2:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.495A>G
  hgvsp: ENST00000369904.3:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.495A>G
  hgvsp: ENST00000369903.2:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.495A>G
  hgvsp: ENST00000438534.2:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.495A>G
  hgvsp: ENST00000409267.1:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.714A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.495A>G
  hgvsp: ENST00000429031.1:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.777A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.37A>G
  hgvsp: ENST00000474126.2:c.37A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.600A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.495A>G
  hgvsp: ENST00000409138.2:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.495A>G
  hgvsp: ENST00000369909.2:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.495A>G
  hgvsp: ENST00000369907.3:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly165Gly
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

1-109824266-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824266
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824266
    reference: chr 1
allele count: 6
allele frequency: 5.06679727744093e-5
allele num: 118418
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.494G>C
  hgvsp: ENSP00000358919.2:p.Gly165Ala
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.36G>C
  hgvsp: ENSP00000474682.1:p.Gly13Ala
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.494G>C
  hgvsp: ENSP00000413186.2:p.Gly165Ala
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.494G>C
  hgvsp: ENSP00000386323.1:p.Gly165Ala
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.494G>C
  hgvsp: ENSP00000358920.3:p.Gly165Ala
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.494G>C
  hgvsp: ENSP00000387791.1:p.Gly165Ala
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.494G>C
  hgvsp: ENSP00000474667.1:p.Gly165Ala
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.713G>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.494G>C
  hgvsp: ENSP00000358923.3:p.Gly165Ala
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.494G>C
  hgvsp: ENSP00000413591.2:p.Gly165Ala
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.494G>C
  hgvsp: ENSP00000358925.2:p.Gly165Ala
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.599G>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.776G>C
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 29203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly165Ala
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

1-109824275-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824275
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824275
    reference: chr 1
allele count: 1
allele frequency: 8.393063971933595e-6
allele num: 119146
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.485C>A
  hgvsp: ENSP00000358925.2:p.Ala162Asp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.767C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.485C>A
  hgvsp: ENSP00000413591.2:p.Ala162Asp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.27C>A
  hgvsp: ENSP00000474682.1:p.Ala10Asp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.485C>A
  hgvsp: ENSP00000386323.1:p.Ala162Asp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.485C>A
  hgvsp: ENSP00000358919.2:p.Ala162Asp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.485C>A
  hgvsp: ENSP00000413186.2:p.Ala162Asp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.485C>A
  hgvsp: ENSP00000387791.1:p.Ala162Asp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.485C>A
  hgvsp: ENSP00000474667.1:p.Ala162Asp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.485C>A
  hgvsp: ENSP00000358920.3:p.Ala162Asp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.590C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.704C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.485C>A
  hgvsp: ENSP00000358923.3:p.Ala162Asp
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29417
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12185
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala162Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

1-109824278-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824278
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824278
    reference: chr 1
allele count: 1
allele frequency: 8.374788536589452e-6
allele num: 119406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.764G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.482G>A
  hgvsp: ENSP00000358923.3:p.Arg161Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.482G>A
  hgvsp: ENSP00000474667.1:p.Arg161Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.482G>A
  hgvsp: ENSP00000358919.2:p.Arg161Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.482G>A
  hgvsp: ENSP00000413591.2:p.Arg161Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.24G>A
  hgvsp: ENSP00000474682.1:p.Arg9Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.482G>A
  hgvsp: ENSP00000387791.1:p.Arg161Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.482G>A
  hgvsp: ENSP00000386323.1:p.Arg161Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.482G>A
  hgvsp: ENSP00000413186.2:p.Arg161Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.482G>A
  hgvsp: ENSP00000358925.2:p.Arg161Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.701G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.482G>A
  hgvsp: ENSP00000358920.3:p.Arg161Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.587G>A
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg161Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

1-109824279-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824279
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824279
    reference: chr 1
allele count: 6
allele frequency: 5.012531328320802e-5
allele num: 119700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.481C>T
  hgvsp: ENSP00000413186.2:p.Arg161Trp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.481C>T
  hgvsp: ENSP00000474667.1:p.Arg161Trp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.481C>T
  hgvsp: ENSP00000358925.2:p.Arg161Trp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.481C>T
  hgvsp: ENSP00000413591.2:p.Arg161Trp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.763C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.481C>T
  hgvsp: ENSP00000387791.1:p.Arg161Trp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.481C>T
  hgvsp: ENSP00000358919.2:p.Arg161Trp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.586C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.481C>T
  hgvsp: ENSP00000358920.3:p.Arg161Trp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.481C>T
  hgvsp: ENSP00000358923.3:p.Arg161Trp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.700C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.23C>T
  hgvsp: ENSP00000474682.1:p.Arg9Trp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.481C>T
  hgvsp: ENSP00000386323.1:p.Arg161Trp
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12219
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg161Trp
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

1-109824300-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824300
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824300
    reference: chr 1
allele count: 1
allele frequency: 8.299443937256203e-6
allele num: 120490
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.460A>G
  hgvsp: ENSP00000474667.1:p.Lys154Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.460A>G
  hgvsp: ENSP00000358923.3:p.Lys154Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.460A>G
  hgvsp: ENSP00000386323.1:p.Lys154Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.460A>G
  hgvsp: ENSP00000358920.3:p.Lys154Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474682
  ensembl transcript: ENST00000474126
  gene symbol: PSRC1
  hgvsc: ENST00000474126.2:c.2A>G
  hgvsp: ENSP00000474682.1:p.Lys2Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.460A>G
  hgvsp: ENSP00000358925.2:p.Lys154Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.460A>G
  hgvsp: ENSP00000413591.2:p.Lys154Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.460A>G
  hgvsp: ENSP00000358919.2:p.Lys154Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.460A>G
  hgvsp: ENSP00000387791.1:p.Lys154Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.565A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.460A>G
  hgvsp: ENSP00000413186.2:p.Lys154Glu
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.679A>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.742A>G
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys154Glu
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-109824307-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824307
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824308
    reference: chr 1
allele count: 1
allele frequency: 8.287613333112331e-6
allele num: 120662
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.452dupA
  hgvsp: ENSP00000474667.1:p.Asn151LysfsTer2
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.452dupA
  hgvsp: ENSP00000386323.1:p.Asn151LysfsTer2
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.452dupA
  hgvsp: ENSP00000358923.3:p.Asn151LysfsTer2
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.452dupA
  hgvsp: ENSP00000358919.2:p.Asn151LysfsTer2
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.452dupA
  hgvsp: ENSP00000387791.1:p.Asn151LysfsTer2
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.557dupA
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.452dupA
  hgvsp: ENSP00000358920.3:p.Asn151LysfsTer2
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.452dupA
  hgvsp: ENSP00000413591.2:p.Asn151LysfsTer2
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.452dupA
  hgvsp: ENSP00000358925.2:p.Asn151LysfsTer2
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.452dupA
  hgvsp: ENSP00000413186.2:p.Asn151LysfsTer2
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.671dupA
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.734dupA
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn151LysfsTer2
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

1-109824307-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824307
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824307
    reference: chr 1
allele count: 1
allele frequency: 8.287613333112331e-6
allele num: 120662
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.453T>C
  hgvsp: ENST00000369909.2:c.453T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.453T>C
  hgvsp: ENST00000418914.2:c.453T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.453T>C
  hgvsp: ENST00000409138.2:c.453T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.453T>C
  hgvsp: ENST00000369904.3:c.453T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.453T>C
  hgvsp: ENST00000409267.1:c.453T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.453T>C
  hgvsp: ENST00000369903.2:c.453T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.672T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.735T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.453T>C
  hgvsp: ENST00000438534.2:c.453T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.558T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.453T>C
  hgvsp: ENST00000369907.3:c.453T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.453T>C
  hgvsp: ENST00000429031.1:c.453T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13947
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn151Asn
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

1-109824310-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824310
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824310
    reference: chr 1
allele count: 1
allele frequency: 8.286514526259965e-6
allele num: 120678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.450T>C
  hgvsp: ENST00000409138.2:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.450T>C
  hgvsp: ENST00000369909.2:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.450T>C
  hgvsp: ENST00000429031.1:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.450T>C
  hgvsp: ENST00000369907.3:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.450T>C
  hgvsp: ENST00000369904.3:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.450T>C
  hgvsp: ENST00000418914.2:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.450T>C
  hgvsp: ENST00000369903.2:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.732T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.450T>C
  hgvsp: ENST00000409267.1:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.555T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.669T>C
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.450T>C
  hgvsp: ENST00000438534.2:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser150Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

1-109824311-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824311
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824311
    reference: chr 1
allele count: 5
allele frequency: 4.142639358388016e-5
allele num: 120696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.449G>A
  hgvsp: ENSP00000358920.3:p.Ser150Asn
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.668G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.449G>A
  hgvsp: ENSP00000386323.1:p.Ser150Asn
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.449G>A
  hgvsp: ENSP00000358919.2:p.Ser150Asn
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.449G>A
  hgvsp: ENSP00000413186.2:p.Ser150Asn
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.449G>A
  hgvsp: ENSP00000358925.2:p.Ser150Asn
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.554G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.449G>A
  hgvsp: ENSP00000413591.2:p.Ser150Asn
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.449G>A
  hgvsp: ENSP00000474667.1:p.Ser150Asn
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.731G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.449G>A
  hgvsp: ENSP00000387791.1:p.Ser150Asn
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.449G>A
  hgvsp: ENSP00000358923.3:p.Ser150Asn
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser150Asn
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-109824313-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824313
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824313
    reference: chr 1
allele count: 1
allele frequency: 8.285416010737898e-6
allele num: 120694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.729G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.447G>T
  hgvsp: ENST00000409267.1:c.447G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.447G>T
  hgvsp: ENST00000429031.1:c.447G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.447G>T
  hgvsp: ENST00000369904.3:c.447G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.447G>T
  hgvsp: ENST00000438534.2:c.447G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.447G>T
  hgvsp: ENST00000418914.2:c.447G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.666G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.447G>T
  hgvsp: ENST00000409138.2:c.447G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.447G>T
  hgvsp: ENST00000369903.2:c.447G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.447G>T
  hgvsp: ENST00000369907.3:c.447G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.552G>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.447G>T
  hgvsp: ENST00000369909.2:c.447G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg149Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

1-109824313-C-CCGGAGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824313
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824319
    reference: chr 1
allele count: 1
allele frequency: 8.285416010737898e-6
allele num: 120694
alternate allele: CCGGAGT
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.441_446dupACTCCG
  hgvsp: ENSP00000386323.1:p.Leu148_Arg149dup
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.441_446dupACTCCG
  hgvsp: ENSP00000413591.2:p.Leu148_Arg149dup
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.441_446dupACTCCG
  hgvsp: ENSP00000413186.2:p.Leu148_Arg149dup
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.441_446dupACTCCG
  hgvsp: ENSP00000358923.3:p.Leu148_Arg149dup
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.723_728dupACTCCG
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.441_446dupACTCCG
  hgvsp: ENSP00000358920.3:p.Leu148_Arg149dup
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.441_446dupACTCCG
  hgvsp: ENSP00000387791.1:p.Leu148_Arg149dup
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.441_446dupACTCCG
  hgvsp: ENSP00000358919.2:p.Leu148_Arg149dup
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.441_446dupACTCCG
  hgvsp: ENSP00000474667.1:p.Leu148_Arg149dup
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.546_551dupACTCCG
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.660_665dupACTCCG
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.441_446dupACTCCG
  hgvsp: ENSP00000358925.2:p.Leu148_Arg149dup
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu148_Arg149dup
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-109824314-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824314
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824314
    reference: chr 1
allele count: 1
allele frequency: 8.285416010737898e-6
allele num: 120694
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.446G>A
  hgvsp: ENSP00000358925.2:p.Arg149Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.665G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.728G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.446G>A
  hgvsp: ENSP00000358920.3:p.Arg149Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.551G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.446G>A
  hgvsp: ENSP00000386323.1:p.Arg149Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.446G>A
  hgvsp: ENSP00000387791.1:p.Arg149Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.446G>A
  hgvsp: ENSP00000358923.3:p.Arg149Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.446G>A
  hgvsp: ENSP00000358919.2:p.Arg149Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.446G>A
  hgvsp: ENSP00000474667.1:p.Arg149Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.446G>A
  hgvsp: ENSP00000413591.2:p.Arg149Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.446G>A
  hgvsp: ENSP00000413186.2:p.Arg149Gln
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg149Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

1-109824315-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824315
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824315
    reference: chr 1
allele count: 4
allele frequency: 3.312574532926991e-5
allele num: 120752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.445C>T
  hgvsp: ENSP00000413186.2:p.Arg149Trp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.727C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.445C>T
  hgvsp: ENSP00000474667.1:p.Arg149Trp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.445C>T
  hgvsp: ENSP00000358920.3:p.Arg149Trp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.445C>T
  hgvsp: ENSP00000387791.1:p.Arg149Trp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.445C>T
  hgvsp: ENSP00000413591.2:p.Arg149Trp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.445C>T
  hgvsp: ENSP00000358925.2:p.Arg149Trp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.445C>T
  hgvsp: ENSP00000386323.1:p.Arg149Trp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.445C>T
  hgvsp: ENSP00000358923.3:p.Arg149Trp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.445C>T
  hgvsp: ENSP00000358919.2:p.Arg149Trp
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.664C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.550C>T
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13946
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg149Trp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

1-109824320-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824320
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824320
    reference: chr 1
allele count: 5
allele frequency: 4.138798755049334e-5
allele num: 120808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.440G>A
  hgvsp: ENSP00000386323.1:p.Arg147Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.659G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.545G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.440G>A
  hgvsp: ENSP00000413186.2:p.Arg147Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.440G>A
  hgvsp: ENSP00000358919.2:p.Arg147Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.440G>A
  hgvsp: ENSP00000358923.3:p.Arg147Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.440G>A
  hgvsp: ENSP00000358920.3:p.Arg147Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.440G>A
  hgvsp: ENSP00000387791.1:p.Arg147Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.440G>A
  hgvsp: ENSP00000474667.1:p.Arg147Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.722G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.440G>A
  hgvsp: ENSP00000413591.2:p.Arg147Gln
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.440G>A
  hgvsp: ENSP00000358925.2:p.Arg147Gln
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg147Gln
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD

1-109824321-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824321
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824321
    reference: chr 1
allele count: 3
allele frequency: 2.482786016949153e-5
allele num: 120832
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.439C>T
  hgvsp: ENSP00000358925.2:p.Arg147Ter
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.439C>T
  hgvsp: ENSP00000358923.3:p.Arg147Ter
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.721C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.439C>T
  hgvsp: ENSP00000474667.1:p.Arg147Ter
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.439C>T
  hgvsp: ENSP00000386323.1:p.Arg147Ter
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.439C>T
  hgvsp: ENSP00000358919.2:p.Arg147Ter
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.439C>T
  hgvsp: ENSP00000387791.1:p.Arg147Ter
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.439C>T
  hgvsp: ENSP00000413591.2:p.Arg147Ter
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.439C>T
  hgvsp: ENSP00000358920.3:p.Arg147Ter
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.658C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.544C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.439C>T
  hgvsp: ENSP00000413186.2:p.Arg147Ter
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg147Ter
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/1-109824325-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824325
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824326
    reference: chr 1
allele count: 1
allele frequency: 8.273077750384698e-6
allele num: 120874
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.434_435insT
  hgvsp: ENSP00000358919.2:p.Pro146AlafsTer6
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.434_435insT
  hgvsp: ENSP00000387791.1:p.Pro146AlafsTer6
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.716_717insT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.539_540insT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.653_654insT
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.434_435insT
  hgvsp: ENSP00000413186.2:p.Pro146AlafsTer6
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.434_435insT
  hgvsp: ENSP00000413591.2:p.Pro146AlafsTer6
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.434_435insT
  hgvsp: ENSP00000474667.1:p.Pro146AlafsTer6
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.434_435insT
  hgvsp: ENSP00000358923.3:p.Pro146AlafsTer6
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.434_435insT
  hgvsp: ENSP00000386323.1:p.Pro146AlafsTer6
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.434_435insT
  hgvsp: ENSP00000358925.2:p.Pro146AlafsTer6
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.434_435insT
  hgvsp: ENSP00000358920.3:p.Pro146AlafsTer6
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro146AlafsTer6
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-109824325-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824325
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824325
    reference: chr 1
allele count: 1
allele frequency: 8.273077750384698e-6
allele num: 120874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.435G>A
  hgvsp: ENST00000369903.2:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.654G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.540G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.435G>A
  hgvsp: ENST00000409267.1:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.717G>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.435G>A
  hgvsp: ENST00000369904.3:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.435G>A
  hgvsp: ENST00000409138.2:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.435G>A
  hgvsp: ENST00000438534.2:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.435G>A
  hgvsp: ENST00000369907.3:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.435G>A
  hgvsp: ENST00000418914.2:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.435G>A
  hgvsp: ENST00000429031.1:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.435G>A
  hgvsp: ENST00000369909.2:c.435G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30110
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr145Thr
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

1-109824326-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824326
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824326
    reference: chr 1
allele count: 7
allele frequency: 5.790387955993052e-5
allele num: 120890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.434C>T
  hgvsp: ENSP00000474667.1:p.Thr145Met
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.539C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.434C>T
  hgvsp: ENSP00000413591.2:p.Thr145Met
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.716C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.434C>T
  hgvsp: ENSP00000358923.3:p.Thr145Met
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.434C>T
  hgvsp: ENSP00000358920.3:p.Thr145Met
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.434C>T
  hgvsp: ENSP00000387791.1:p.Thr145Met
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.434C>T
  hgvsp: ENSP00000358925.2:p.Thr145Met
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.434C>T
  hgvsp: ENSP00000358919.2:p.Thr145Met
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.653C>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.434C>T
  hgvsp: ENSP00000413186.2:p.Thr145Met
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.434C>T
  hgvsp: ENSP00000386323.1:p.Thr145Met
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30105
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr145Met
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

1-109824334-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824334
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824334
    reference: chr 1
allele count: 1
allele frequency: 8.270067318347971e-6
allele num: 120918
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.426C>G
  hgvsp: ENSP00000358920.3:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.426C>G
  hgvsp: ENSP00000358925.2:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.426C>G
  hgvsp: ENSP00000387791.1:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.426C>G
  hgvsp: ENSP00000386323.1:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.531C>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.426C>G
  hgvsp: ENSP00000358923.3:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.426C>G
  hgvsp: ENSP00000413591.2:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.426C>G
  hgvsp: ENSP00000413186.2:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.426C>G
  hgvsp: ENSP00000358919.2:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.645C>G
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.426C>G
  hgvsp: ENSP00000474667.1:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.708C>G
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser142Arg
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD

1-109824334-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824334
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824334
    reference: chr 1
allele count: 26
allele frequency: 2.150217502770473e-4
allele num: 120918
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.426C>A
  hgvsp: ENSP00000358919.2:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.708C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.426C>A
  hgvsp: ENSP00000358920.3:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.531C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.426C>A
  hgvsp: ENSP00000358925.2:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.426C>A
  hgvsp: ENSP00000474667.1:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.426C>A
  hgvsp: ENSP00000358923.3:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.426C>A
  hgvsp: ENSP00000387791.1:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.426C>A
  hgvsp: ENSP00000413186.2:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.645C>A
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.426C>A
  hgvsp: ENSP00000386323.1:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.426C>A
  hgvsp: ENSP00000413591.2:p.Ser142Arg
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13924
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser142Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

1-109824336-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 109824336
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 109824336
    reference: chr 1
allele count: 1
allele frequency: 8.270204108637402e-6
allele num: 120916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000492431
  gene symbol: PSRC1
  hgvsc: ENST00000492431.1:n.706A>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358925
  ensembl transcript: ENST00000369909
  gene symbol: PSRC1
  hgvsc: ENST00000369909.2:c.424A>T
  hgvsp: ENSP00000358925.2:p.Ser142Cys
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358919
  ensembl transcript: ENST00000369903
  gene symbol: PSRC1
  hgvsc: ENST00000369903.2:c.424A>T
  hgvsp: ENSP00000358919.2:p.Ser142Cys
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000474667
  ensembl transcript: ENST00000409138
  gene symbol: PSRC1
  hgvsc: ENST00000409138.2:c.424A>T
  hgvsp: ENSP00000474667.1:p.Ser142Cys
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358923
  ensembl transcript: ENST00000369907
  gene symbol: PSRC1
  hgvsc: ENST00000369907.3:c.424A>T
  hgvsp: ENSP00000358923.3:p.Ser142Cys
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000459765
  gene symbol: PSRC1
  hgvsc: ENST00000459765.1:n.529A>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413186
  ensembl transcript: ENST00000418914
  gene symbol: PSRC1
  hgvsc: ENST00000418914.2:c.424A>T
  hgvsp: ENSP00000413186.2:p.Ser142Cys
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000413591
  ensembl transcript: ENST00000438534
  gene symbol: PSRC1
  hgvsc: ENST00000438534.2:c.424A>T
  hgvsp: ENSP00000413591.2:p.Ser142Cys
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000134222
  ensembl transcript: ENST00000471740
  gene symbol: PSRC1
  hgvsc: ENST00000471740.1:n.643A>T
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000358920
  ensembl transcript: ENST00000369904
  gene symbol: PSRC1
  hgvsc: ENST00000369904.3:c.424A>T
  hgvsp: ENSP00000358920.3:p.Ser142Cys
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000386323
  ensembl transcript: ENST00000409267
  gene symbol: PSRC1
  hgvsc: ENST00000409267.1:c.424A>T
  hgvsp: ENSP00000386323.1:p.Ser142Cys
  variant of: http://identifiers.org/hgnc/24472
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134222
  ensembl protein: ENSP00000387791
  ensembl transcript: ENST00000429031
  gene symbol: PSRC1
  hgvsc: ENST00000429031.1:c.424A>T
  hgvsp: ENSP00000387791.1:p.Ser142Cys
  variant of: http://identifiers.org/hgnc/24472
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12257
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser142Cys
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

GenotypeDepth
all individuals: 20
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39501
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3277
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9011
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 744
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.402030838661151e-5
allele num: 10636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60524
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.243781094527363e-3
allele num: 804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15100
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

MQRankSum
type: SiteQuality
SIO_000300: -7.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-1

DP
type: SiteQuality
SIO_000300: 1.298802e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

FS
type: SiteQuality
SIO_000300: 6.2e-1

QD
type: SiteQuality
SIO_000300: 1.533e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

GenotypeDepth
all individuals: 23
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9016
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40268
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10636
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60536
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

DP
type: SiteQuality
SIO_000300: 1.30026e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.332e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.544e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.793e0

QD
type: SiteQuality
SIO_000300: 4.29e0

GenotypeDepth
all individuals: 1925
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9336
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1111
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3221
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40638
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5428
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.657789613848202e-5
allele num: 15020
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60398
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.09e0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 1.135e1

DP
type: SiteQuality
SIO_000300: 1.295953e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 131
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.686279753944904e-5
allele num: 14956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.889e1

VQSLOD
type: SiteQuality
SIO_000300: -5.124e-1

QD
type: SiteQuality
SIO_000300: 1.208e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.292562e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
all individuals: 226
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GenotypeQuality
all individuals: 922
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14268
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.843936190659235e-4
allele num: 10406
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.179245283018868e-4
allele num: 8480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58542
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5280
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

DP
type: SiteQuality
SIO_000300: 1.253949e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.93e-1

QD
type: SiteQuality
SIO_000300: 1.336e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 6
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variant carriers: 0

GenotypeDepth
all individuals: 27
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 565
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.760005632018022e-5
allele num: 56818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8012
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.348e1

MQRankSum
type: SiteQuality
SIO_000300: -2.57e-1

DP
type: SiteQuality
SIO_000300: 1.210275e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.849e0

GenotypeDepth
all individuals: 244
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variant carriers: 0

GenotypeQuality
all individuals: 964
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 64
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GenotypeQuality
all individuals: 880
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.577689528102751e-5
allele num: 55902
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.93e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -1.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.066e0

DP
type: SiteQuality
SIO_000300: 1.185553e6

QD
type: SiteQuality
SIO_000300: 1.031e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 20

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 64
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 1.552335895919574e-3
allele num: 13528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55902
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5038
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.066e0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
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DP
type: SiteQuality
SIO_000300: 1.185553e6

QD
type: SiteQuality
SIO_000300: 1.031e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.796557795264274e-5
allele num: 55662
num of homozygotes: 0

African
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South Asian
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Other
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DP
type: SiteQuality
SIO_000300: 1.179299e6

ClippingRankSum
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MQ
type: SiteQuality
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FS
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MQRankSum
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2412
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54548
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African
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allele count: 2
allele frequency: 2.522068095838588e-4
allele num: 7930
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.15023e6

ReadPosRankSum
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SIO_000300: 1.01e0

QD
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e-1

FS
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 828
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13122
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4924
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9770
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.836344939033348e-5
allele num: 54456
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

InbreedingCoeff
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SIO_000300: -1.7e-3

ReadPosRankSum
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MQRankSum
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QD
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 2.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7706
num of homozygotes: 0

Latino
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allele frequency: 6.365372374283895e-4
allele num: 9426
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 52548
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.119e0

VQSLOD
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SIO_000300: 9.9e-1

DP
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SIO_000300: 1.096067e6

ReadPosRankSum
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SIO_000300: 3.07e-1

BaseQRankSum
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SIO_000300: 3.11e0

MQRankSum
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SIO_000300: -1.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

QD
type: SiteQuality
SIO_000300: 1.092e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 1.093852548676438e-4
allele num: 9142
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 1.0e0

ReadPosRankSum
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SIO_000300: 8.71e-1

DP
type: SiteQuality
SIO_000300: 1.049479e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.646e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: -1.517e0

VQSLOD
type: SiteQuality
SIO_000300: -1.02e0

QD
type: SiteQuality
SIO_000300: 1.746e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9106
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4590
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 50576
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East Asian
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allele num: 7340
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MQRankSum
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SIO_000300: -1.026e0

ClippingRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: -8.21e-1

InbreedingCoeff
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SIO_000300: -3.5e-3

FS
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VQSLOD
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MQ
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 6.190672719768881e-5
allele num: 48460
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 11630
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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QD
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FS
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.920860545524395e-4
allele num: 10412
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4024
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Latino
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num of homozygotes: 0

Other
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FS
type: SiteQuality
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MQRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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QD
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VQSLOD
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
type: Population
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 43748
num of homozygotes: 0

East Asian
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South Asian
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allele count: 1
allele frequency: 9.604302727621975e-5
allele num: 10412
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InbreedingCoeff
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QD
type: SiteQuality
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BaseQRankSum
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FS
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MQRankSum
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DP
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ClippingRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6140
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 1.023122570083896e-4
allele num: 9774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 41078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6078
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3794
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.753e1

ClippingRankSum
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SIO_000300: 2.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

VQSLOD
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ReadPosRankSum
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SIO_000300: 1.55e0

MQRankSum
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DP
type: SiteQuality
SIO_000300: 8.03959e5

QD
type: SiteQuality
SIO_000300: 3.96e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.521940885705639e-5
allele num: 39652
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9426
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6918
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3666
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

FS
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SIO_000300: 2.831e0

MQ
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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SIO_000300: -1.098e0

MQRankSum
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DP
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QD
type: SiteQuality
SIO_000300: 1.993e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.631578947368421e-5
allele num: 38000
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.138e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 1.8892e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.086e-1

DP
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SIO_000300: 7.43399e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

MQ
type: SiteQuality
SIO_000300: 5.877e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.043e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.255299954894001e-4
allele num: 8868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3532
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.736111111111111e-4
allele num: 5760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.631578947368421e-5
allele num: 38000
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.043e0

DP
type: SiteQuality
SIO_000300: 7.43399e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.138e1

FS
type: SiteQuality
SIO_000300: 1.8892e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.086e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQ
type: SiteQuality
SIO_000300: 5.877e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.744990392533626e-5
allele num: 36430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6336
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.1792e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.32e-2

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.824e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6022
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.909854851031322e-4
allele num: 5236
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 2.617344268016053e-4
allele num: 34386
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.33e0

VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
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MQRankSum
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DP
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 4870
num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.182078533698211e-5
allele num: 31426
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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FS
type: SiteQuality
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MQ
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ClippingRankSum
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QD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4722
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7044
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 30380
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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FS
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MQRankSum
type: SiteQuality
SIO_000300: -1.946e0

MQ
type: SiteQuality
SIO_000300: 6.071e1

DP
type: SiteQuality
SIO_000300: 6.23875e5

QD
type: SiteQuality
SIO_000300: 1.438e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-1

GenotypeQuality
all individuals: 3041
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 131
bin: 4.25e1
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GenotypeQuality
all individuals: 3262
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2960
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.291639236339697e-5
allele num: 30380
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.69e-2

FS
type: SiteQuality
SIO_000300: 1.669e0

QD
type: SiteQuality
SIO_000300: 1.438e1

MQ
type: SiteQuality
SIO_000300: 6.071e1

DP
type: SiteQuality
SIO_000300: 6.23875e5

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.946e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.576789656259855e-4
allele num: 6342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2740
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 27676
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

QD
type: SiteQuality
SIO_000300: 1.706e1

DP
type: SiteQuality
SIO_000300: 5.8462e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.27e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 246
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.229974160206718e-4
allele num: 3096
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4076
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18766
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 8.67e0

FS
type: SiteQuality
SIO_000300: 3.358e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.89e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.96354e5

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 120
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1996
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 6.230529595015577e-4
allele num: 3210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 3096
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.89e-2

DP
type: SiteQuality
SIO_000300: 4.96354e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

FS
type: SiteQuality
SIO_000300: 3.358e0

QD
type: SiteQuality
SIO_000300: 8.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.588209135378947e-5
allele num: 62964
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.717e0

DP
type: SiteQuality
SIO_000300: 1.875429e6

FS
type: SiteQuality
SIO_000300: 5.4e0

ClippingRankSum
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SIO_000300: 1.95e-1

MQ
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SIO_000300: 5.925e1

QD
type: SiteQuality
SIO_000300: 1.094e1

MQRankSum
type: SiteQuality
SIO_000300: 2.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62964
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9664
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.712319219376198e-5
allele num: 11478
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.95e-1

ReadPosRankSum
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QD
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VQSLOD
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MQ
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BaseQRankSum
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FS
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MQRankSum
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SIO_000300: 2.73e-1

InbreedingCoeff
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DP
type: SiteQuality
SIO_000300: 1.875429e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.742160278745645e-4
allele num: 11480
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63010
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.93e-1

ClippingRankSum
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BaseQRankSum
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MQ
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VQSLOD
type: SiteQuality
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QD
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FS
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InbreedingCoeff
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SIO_000300: -1.3e-3

ReadPosRankSum
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SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 1.87734e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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South Asian
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Latino
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FS
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MQ
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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QD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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South Asian
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Other
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Latino
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European (Finnish)
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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VQSLOD
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FS
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QD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Latino
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Other
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South Asian
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East Asian
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European (Finnish)
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QD
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MQ
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ClippingRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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South Asian
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Latino
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allele num: 11508
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European (Non-Finnish)
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African
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Other
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ClippingRankSum
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MQ
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InbreedingCoeff
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QD
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VQSLOD
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MQRankSum
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DP
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FS
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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num of homozygotes: 0

African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Other
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ClippingRankSum
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MQ
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ReadPosRankSum
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DP
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InbreedingCoeff
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FS
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QD
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VQSLOD
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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Other
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African
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European (Finnish)
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FS
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DP
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VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Latino
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South Asian
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MQRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQ
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 605
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.210433244916003e-4
allele num: 13572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.79e-1

DP
type: SiteQuality
SIO_000300: 1.91151e6

QD
type: SiteQuality
SIO_000300: 1.155e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.202e0

GenotypeDepth
all individuals: 232
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 263
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56563126252505e-5
allele num: 63872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.461988304093567e-4
allele num: 13680
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.080000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

DP
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SIO_000300: 1.913434e6

QD
type: SiteQuality
SIO_000300: 1.168e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.797e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 838
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 420
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 265
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GenotypeQuality
all individuals: 8503
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variant carriers: 2

GenotypeQuality
all individuals: 1478
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.111774956435151e-5
allele num: 64272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.216e1

FS
type: SiteQuality
SIO_000300: 6.456e0

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e0

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

DP
type: SiteQuality
SIO_000300: 1.92682e6

GenotypeDepth
all individuals: 2189
bin: 7.5e0
variant carriers: 60

GenotypeDepth
all individuals: 313
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variant carriers: 143

GenotypeDepth
all individuals: 10563
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variant carriers: 78

GenotypeDepth
all individuals: 487
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variant carriers: 399

GenotypeDepth
all individuals: 499
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variant carriers: 390

GenotypeDepth
all individuals: 332
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variant carriers: 168

GenotypeQuality
all individuals: 1414
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variant carriers: 6

GenotypeQuality
all individuals: 529
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variant carriers: 11

GenotypeQuality
all individuals: 6488
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variant carriers: 4

GenotypeQuality
all individuals: 241
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variant carriers: 3

GenotypeQuality
all individuals: 326
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variant carriers: 3

GenotypeQuality
all individuals: 37146
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variant carriers: 8

GenotypeQuality
all individuals: 2325
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variant carriers: 4

GenotypeQuality
all individuals: 87
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variant carriers: 2

GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 1228
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variant carriers: 13

GenotypeQuality
all individuals: 57
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variant carriers: 3

GenotypeQuality
all individuals: 179
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variant carriers: 13

GenotypeQuality
all individuals: 184
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 102
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variant carriers: 7

GenotypeQuality
all individuals: 68
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variant carriers: 3

GenotypeQuality
all individuals: 354
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variant carriers: 4

GenotypeQuality
all individuals: 112
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variant carriers: 5

GenotypeQuality
all individuals: 147
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GenotypeQuality
all individuals: 9606
bin: 9.75e1
variant carriers: 7574

Latino
type: Population
allele count: 234
allele frequency: 2.027729636048527e-2
allele num: 11540
num of homozygotes: 2

Other
type: Population
allele count: 63
allele frequency: 7.191780821917808e-2
allele num: 876
num of homozygotes: 3

African
type: Population
allele count: 242
allele frequency: 2.465362673186634e-2
allele num: 9816
num of homozygotes: 2

East Asian
type: Population
allele count: 315
allele frequency: 3.660237043922845e-2
allele num: 8606
num of homozygotes: 5

South Asian
type: Population
allele count: 788
allele frequency: 5.354715955422669e-2
allele num: 14716
num of homozygotes: 42

European (Finnish)
type: Population
allele count: 881
allele frequency: 1.332022981554279e-1
allele num: 6614
num of homozygotes: 62

European (Non-Finnish)
type: Population
allele count: 5464
allele frequency: 8.468429372927064e-2
allele num: 64522
num of homozygotes: 257

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.55e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.44e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

QD
type: SiteQuality
SIO_000300: 1.334e1

MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

DP
type: SiteQuality
SIO_000300: 2.251797e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.252e0

GenotypeDepth
all individuals: 95
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variant carriers: 0

GenotypeDepth
all individuals: 155
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variant carriers: 0

GenotypeDepth
all individuals: 12394
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GenotypeDepth
all individuals: 281
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variant carriers: 10

GenotypeDepth
all individuals: 242
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GenotypeDepth
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GenotypeQuality
all individuals: 1653
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GenotypeQuality
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GenotypeQuality
all individuals: 43271
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GenotypeQuality
all individuals: 111
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GenotypeQuality
all individuals: 142
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GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 2144
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GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 93
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GenotypeQuality
all individuals: 114
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GenotypeQuality
all individuals: 90
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GenotypeQuality
all individuals: 7529
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GenotypeQuality
all individuals: 340
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GenotypeQuality
all individuals: 315
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GenotypeQuality
all individuals: 199
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1403
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GenotypeQuality
all individuals: 2169
bin: 9.75e1
variant carriers: 14

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64740
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 1.419590346785642e-3
allele num: 9862
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.11e0

DP
type: SiteQuality
SIO_000300: 1.684455e6

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

QD
type: SiteQuality
SIO_000300: 1.376e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-1

GenotypeDepth
all individuals: 171
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 277
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variant carriers: 0

GenotypeDepth
all individuals: 95
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GenotypeDepth
all individuals: 121
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variant carriers: 1

GenotypeDepth
all individuals: 82
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GenotypeDepth
all individuals: 12736
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 261
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GenotypeQuality
all individuals: 183
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GenotypeQuality
all individuals: 189
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GenotypeQuality
all individuals: 7582
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GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 78
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GenotypeQuality
all individuals: 2158
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GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 43872
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GenotypeQuality
all individuals: 123
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GenotypeQuality
all individuals: 1664
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GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 269
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GenotypeQuality
all individuals: 63
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GenotypeQuality
all individuals: 199
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1413
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GenotypeQuality
all individuals: 1798
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64976
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.010713563776026e-4
allele num: 9894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.27e-1

QD
type: SiteQuality
SIO_000300: 1.176e1

DP
type: SiteQuality
SIO_000300: 1.692194e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.895e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

FS
type: SiteQuality
SIO_000300: 1.46e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

GenotypeDepth
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 82
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variant carriers: 0

GenotypeDepth
all individuals: 171
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GenotypeDepth
all individuals: 95
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GenotypeDepth
all individuals: 114
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GenotypeDepth
all individuals: 211
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GenotypeQuality
all individuals: 2156
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 103
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 71
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1416
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GenotypeQuality
all individuals: 158
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GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 7591
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.008064516129032e-4
allele num: 9920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65076
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: -1.637e0

VQSLOD
type: SiteQuality
SIO_000300: -5.066000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

QD
type: SiteQuality
SIO_000300: 1.611e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e0

FS
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ClippingRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 4.029820672980052e-4
allele num: 9926
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Latino
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allele frequency: 1.731601731601732e-4
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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Other
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FS
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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BaseQRankSum
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QD
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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African
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East Asian
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European (Non-Finnish)
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Latino
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VQSLOD
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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QD
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MQ
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InbreedingCoeff
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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Latino
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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ClippingRankSum
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FS
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MQ
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DP
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VQSLOD
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InbreedingCoeff
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QD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8622
num of homozygotes: 0

South Asian
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Other
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Latino
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African
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European (Non-Finnish)
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allele count: 2
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allele num: 65602
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European (Finnish)
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MQRankSum
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FS
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QD
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BaseQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8622
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African
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Other
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South Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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BaseQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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MQRankSum
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FS
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ReadPosRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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South Asian
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FS
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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QD
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MQ
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DP
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InbreedingCoeff
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Non-Finnish)
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Other
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Latino
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MQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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ClippingRankSum
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MQ
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FS
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ReadPosRankSum
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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Latino
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East Asian
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Other
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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FS
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QD
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DP
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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QD
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FS
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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South Asian
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Other
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African
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Latino
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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MQ
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MQRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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East Asian
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South Asian
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African
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European (Non-Finnish)
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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FS
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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Latino
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Other
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European (Non-Finnish)
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European (Finnish)
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MQ
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QD
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FS
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VQSLOD
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InbreedingCoeff
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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European (Non-Finnish)
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African
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Latino
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East Asian
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VQSLOD
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MQ
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ReadPosRankSum
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DP
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FS
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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South Asian
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East Asian
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African
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European (Finnish)
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Latino
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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DP
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FS
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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VQSLOD
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ReadPosRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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MQ
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QD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Latino
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African
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Other
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European (Non-Finnish)
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South Asian
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BaseQRankSum
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MQRankSum
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FS
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DP
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VQSLOD
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InbreedingCoeff
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QD
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Finnish)
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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MQRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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Other
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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ClippingRankSum
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MQ
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ReadPosRankSum
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FS
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QD
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MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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MQ
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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DP
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FS
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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South Asian
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African
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European (Finnish)
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MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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DP
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ReadPosRankSum
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QD
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MQ
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7776
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 7.908e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.503e0