3-57850487-T-TCAGCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850487
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850492
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 118744
alternate allele: TCAGCC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1135+44_1135+45insCAGCC
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+44_1135+45insCAGCC
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+44_-213+45insCAGCC
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1135+44_1135+45insCAGCC
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+44_131+45insCAGCC
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1486+44_1486+45insCAGCC
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+44_1135+45insCAGCC
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+44_1135+45insCAGCC
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+44_256+45insCAGCC
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+44_160+45insCAGCC
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17534
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

3-57850489-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850489
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850489
    reference: chr 3
allele count: 1
allele frequency: 8.452370890034655e-6
allele num: 118310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+46G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+46G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+46G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+46G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+46G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1487-45G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1136-45G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1136-45G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+46G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+46G>T
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3593
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6869
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

3-57850492-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850492
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850492
    reference: chr 3
allele count: 2
allele frequency: 1.6951738400773e-5
allele num: 117982
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+49A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1136-42A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+49A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1487-42A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+49A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1136-42A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+49A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+49A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+49A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+49A>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7048
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5785
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16250
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2639
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

3-57850494-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850494
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850494
    reference: chr 3
allele count: 1
allele frequency: 8.478312476684641e-6
allele num: 117948
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1136-40C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+51C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+51C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1136-40C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+51C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+51C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+51C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1487-40C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+51C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+51C>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6673
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1794
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

3-57850505-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850505
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850506
    reference: chr 3
allele count: 5975
allele frequency: 8.900375379848656e-2
allele num: 67132
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+74dupT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1136-17dupT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+74dupT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+74dupT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+74dupT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1487-17dupT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+74dupT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+74dupT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1136-17dupT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+74dupT
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 8918
  bin: 3.25e1
  variant carriers: 1465
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 4.75e1
  variant carriers: 632
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 7.5e0
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8328
  bin: 2.75e1
  variant carriers: 1426
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 2.25e1
  variant carriers: 1258
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 9.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 5.75e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.75e1
  variant carriers: 1165
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 1.25e1
  variant carriers: 269
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 1.75e1
  variant carriers: 723
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 4.25e1
  variant carriers: 1011
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 5.25e1
  variant carriers: 344
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 6.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 3.75e1
  variant carriers: 503
genotype quality: GenotypeQuality
  all individuals: 14579
  bin: 2.5e0
  variant carriers: 609
genotype quality: GenotypeQuality
  all individuals: 3107
  bin: 2.75e1
  variant carriers: 629
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 8.75e1
  variant carriers: 107
num of homozygotes: 1
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD

3-57850505-C-CTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850505
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850507
    reference: chr 3
allele count: 29
allele frequency: 4.319847464696419e-4
allele num: 67132
alternate allele: CTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1136-18_1136-17dupTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+73_1135+74dupTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+73_256+74dupTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1487-18_1487-17dupTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1136-18_1136-17dupTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+73_160+74dupTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+73_131+74dupTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+73_1135+74dupTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+73_1135+74dupTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+73_-213+74dupTT
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8918
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8328
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2301
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3107
  bin: 2.75e1
  variant carriers: 4
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

3-57850505-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850505
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850504
    reference: chr 3
allele count: 18790
allele frequency: 2.798963236608473e-1
allele num: 67132
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+74delT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+74delT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1487-17delT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+74delT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1136-17delT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1136-17delT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+74delT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+74delT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+74delT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+74delT
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 4.75e1
  variant carriers: 1892
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 6.25e1
  variant carriers: 453
genotype depth: GenotypeDepth
  all individuals: 8918
  bin: 3.25e1
  variant carriers: 3819
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 251
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 1.75e1
  variant carriers: 1344
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 4.25e1
  variant carriers: 2575
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 1.25e1
  variant carriers: 446
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 9.75e1
  variant carriers: 734
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 5.75e1
  variant carriers: 757
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 7.5e0
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.75e1
  variant carriers: 3360
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 5.25e1
  variant carriers: 1318
genotype depth: GenotypeDepth
  all individuals: 8328
  bin: 2.75e1
  variant carriers: 3710
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 2.25e1
  variant carriers: 2523
genotype quality: GenotypeQuality
  all individuals: 4495
  bin: 2.25e1
  variant carriers: 1251
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 5.75e1
  variant carriers: 1046
genotype quality: GenotypeQuality
  all individuals: 2007
  bin: 4.75e1
  variant carriers: 1106
genotype quality: GenotypeQuality
  all individuals: 14579
  bin: 2.5e0
  variant carriers: 1042
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
reference allele: CT
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS

3-57850505-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850505
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850503
    reference: chr 3
allele count: 75
allele frequency: 1.117201930524936e-3
allele num: 67132
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+73_160+74delTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1487-18_1487-17delTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+73_-213+74delTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+73_256+74delTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+73_1135+74delTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+73_1135+74delTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+73_131+74delTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1136-18_1136-17delTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+73_1135+74delTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1136-18_1136-17delTT
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 2.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8328
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 8918
  bin: 3.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 14579
  bin: 2.5e0
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 3645
  bin: 1.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3107
  bin: 2.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 7.25e1
  variant carriers: 4
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: CTT
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ

3-57850511-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850511
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850512
    reference: chr 3
allele count: 1
allele frequency: 9.081992225814654e-6
allele num: 110108
alternate allele: TG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+68_1135+69insG
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+68_1135+69insG
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+68_160+69insG
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+68_256+69insG
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+68_131+69insG
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1487-23_1487-22insG
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+68_1135+69insG
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1136-23_1136-22insG
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1136-23_1136-22insG
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+68_-213+69insG
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7167
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

3-57850518-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850518
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850518
    reference: chr 3
allele count: 1
allele frequency: 9.795278675678323e-6
allele num: 102090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1136-16G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+75G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+75G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+75G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+75G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+75G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1136-16G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1487-16G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+75G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+75G>T
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6096
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10923
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30271
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ

3-57850520-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850520
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850520
    reference: chr 3
allele count: 1
allele frequency: 1.011797559544286e-5
allele num: 98834
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1487-14A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+77A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+77A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+77A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1136-14A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+77A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1136-14A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+77A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+77A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+77A>T
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7338
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4299
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

3-57850521-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850521
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850521
    reference: chr 3
allele count: 1
allele frequency: 1.011961383553604e-5
allele num: 98818
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1136-13C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+78C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+78C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+78C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1487-13C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+78C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+78C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+78C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+78C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1136-13C>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18842
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

3-57850526-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850526
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850526
    reference: chr 3
allele count: 1
allele frequency: 1.066234486288224e-5
allele num: 93788
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1487-8A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+83A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+83A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+83A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+83A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1136-8A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+83A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1136-8A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+83A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+83A>T
  variant of: http://identifiers.org/hgnc/16643
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8724
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 7.75e1
  variant carriers: 0
hgvs: c.1136-8A>T
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

3-57850531-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850531
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850531
    reference: chr 3
allele count: 1
allele frequency: 1.135512002361865e-5
allele num: 88066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1136-3C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+88C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+88C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+88C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1487-3C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1136-3C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+88C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+88C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+88C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+88C>T
  variant of: http://identifiers.org/hgnc/16643
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7196
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3233
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1136-3C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

3-57850532-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850532
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850532
    reference: chr 3
allele count: 1
allele frequency: 1.158936559812716e-5
allele num: 86286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+89A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+89A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1487-2A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+89A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1136-2A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+89A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+89A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+89A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+89A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1136-2A>G
  variant of: http://identifiers.org/hgnc/16643
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3080
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 7.75e1
  variant carriers: 0
hgvs: c.1136-2A>G
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

3-57850536-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850536
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850536
    reference: chr 3
allele count: 1
allele frequency: 1.201518719661652e-5
allele num: 83228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1138C>T
  hgvsp: ENSP00000373224.3:p.Arg380Trp
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+93C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+93C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+93C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+93C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1489C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+93C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1138C>T
  hgvsp: ENSP00000398661.1:p.Arg380Trp
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+93C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+93C>T
  variant of: http://identifiers.org/hgnc/16643
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13517
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4136
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2574
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg380Trp
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

3-57850537-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850537
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850537
    reference: chr 3
allele count: 2
allele frequency: 2.440989088778773e-5
allele num: 81934
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1139G>A
  hgvsp: ENSP00000398661.1:p.Arg380Gln
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1490G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+94G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+94G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+94G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+94G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1139G>A
  hgvsp: ENSP00000373224.3:p.Arg380Gln
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+94G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+94G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+94G>A
  variant of: http://identifiers.org/hgnc/16643
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13856
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg380Gln
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

3-57850548-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850548
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850548
    reference: chr 3
allele count: 1
allele frequency: 1.403863432165319e-5
allele num: 71232
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+105C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1501C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1150C>T
  hgvsp: ENSP00000373224.3:p.Leu384Phe
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+105C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+105C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+105C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1150C>T
  hgvsp: ENSP00000398661.1:p.Leu384Phe
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+105C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+105C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+105C>T
  variant of: http://identifiers.org/hgnc/16643
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16840
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu384Phe
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

3-57850551-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850551
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850551
    reference: chr 3
allele count: 2
allele frequency: 2.938065577623693e-5
allele num: 68072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+108C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1504C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1153C>T
  hgvsp: ENSP00000373224.3:p.Gln385Ter
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+108C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1153C>T
  hgvsp: ENSP00000398661.1:p.Gln385Ter
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+108C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+108C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+108C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+108C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+108C>T
  variant of: http://identifiers.org/hgnc/16643
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7018
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6791
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln385Ter
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-57850598-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850598
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850598
    reference: chr 3
allele count: 1
allele frequency: 3.314331167970303e-5
allele num: 30172
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+155A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+14A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+155A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1186+14A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1186+14A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+155A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+155A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+155A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+155A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+155A>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13545
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1751
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24918
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

3-57850614-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850614
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850614
    reference: chr 3
allele count: 9
allele frequency: 3.768844221105527e-4
allele num: 23880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+171C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+171C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+171C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+171C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1186+30C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1186+30C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+30C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+171C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+171C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+171C>T
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10764
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS

http://identifiers.org/exac.variant/3-57850618-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850618
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850618
    reference: chr 3
allele count: 2
allele frequency: 8.688097306689835e-5
allele num: 23020
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+34A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+175A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1186+34A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1186+34A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+175A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+175A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+175A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+175A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+175A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+175A>C
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28326
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10514
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2407
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/3-57850631-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850631
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850631
    reference: chr 3
allele count: 1
allele frequency: 4.663309084126096e-5
allele num: 21444
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+188A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1186+47A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+188A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+188A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+188A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+188A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+47A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+188A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1186+47A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+188A>C
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27825
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4081
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2574
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD

3-57850632-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850632
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850632
    reference: chr 3
allele count: 1
allele frequency: 4.680771391125258e-5
allele num: 21364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+189A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.160+189A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1186+48A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+189A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+189A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+48A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.256+189A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+189A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1186+48A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+189A>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27818
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20446
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

3-57850983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850983
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850983
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 14834
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.271G>A
  hgvsp: ENSP00000419849.1:p.Asp91Asn
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.175G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+540G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+399G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+540G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1201G>A
  hgvsp: ENSP00000373224.3:p.Asp401Asn
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+540G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+540G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1186+399G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+540G>A
  variant of: http://identifiers.org/hgnc/16643
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp401Asn
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-57850992-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57850992
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57850992
    reference: chr 3
allele count: 2
allele frequency: 1.347708894878706e-4
allele num: 14840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1210C>T
  hgvsp: ENSP00000373224.3:p.Pro404Ser
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+549C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.280C>T
  hgvsp: ENSP00000419849.1:p.Pro94Ser
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.184C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+549C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1186+408C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+408C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+549C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+549C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+549C>T
  variant of: http://identifiers.org/hgnc/16643
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4469
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro404Ser
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

3-57851033-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57851033
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57851031
    reference: chr 3
allele count: 1
allele frequency: 8.025682182985554e-5
allele num: 12460
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+591_131+592delTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+591_1135+592delTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+15_1237+16delTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1186+450_1186+451delTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+15_211+16delTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+591_1135+592delTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.307+15_307+16delTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+450_1537+451delTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+591_1135+592delTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+591_-213+592delTT
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: CTT
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

3-57851037-A-AAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57851037
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57851039
    reference: chr 3
allele count: 2
allele frequency: 1.662510390689942e-4
allele num: 12030
alternate allele: AAT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+604_131+605dupTA
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+28_211+29dupTA
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+604_1135+605dupTA
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.307+28_307+29dupTA
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1186+463_1186+464dupTA
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+604_1135+605dupTA
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+28_1237+29dupTA
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+463_1537+464dupTA
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+604_1135+605dupTA
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+604_-213+605dupTA
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP

3-57851040-ATAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57851040
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57851037
    reference: chr 3
allele count: 1
allele frequency: 8.491847826086956e-5
allele num: 11776
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+457_1537+459delTAT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+598_1135+600delTAT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+598_1135+600delTAT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1186+457_1186+459delTAT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+22_211+24delTAT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.307+22_307+24delTAT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+598_-213+600delTAT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+22_1237+24delTAT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+598_131+600delTAT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+598_1135+600delTAT
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: ATAT
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

3-57851055-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57851055
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57851055
    reference: chr 3
allele count: 61
allele frequency: 5.856374807987712e-3
allele num: 10416
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+471A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+612A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+612A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1186+471A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.307+36A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+612A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+36A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+612A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+36A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+612A>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 5
num of homozygotes: 2
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

3-57851058-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57851058
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57851058
    reference: chr 3
allele count: 5
allele frequency: 5.019072475406545e-4
allele num: 9962
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1186+474A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+615A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1135+615A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+615A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+39A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+474A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-213+615A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.307+39A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+39A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1135+615A>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

3-57857318-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857318
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857318
    reference: chr 3
allele count: 2
allele frequency: 1.652291728627607e-5
allele num: 121044
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1187-45G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-212-45G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1136-45G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1136-45G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6299G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6734G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6299G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6875G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6875G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.308-45G>C
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5129
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

3-57857323-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857323
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857323
    reference: chr 3
allele count: 1
allele frequency: 8.259548037531387e-6
allele num: 121072
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6880C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-212-40C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6739C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6880C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.308-40C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1136-40C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1187-40C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6304C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6304C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1136-40C>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5984
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5141
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

3-57857327-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857327
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857327
    reference: chr 3
allele count: 1
allele frequency: 8.257092842751923e-6
allele num: 121108
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6308A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1187-36A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6884A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6884A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1136-36A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6743A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6308A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1136-36A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-212-36A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.308-36A>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-57857332-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857332
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857332
    reference: chr 3
allele count: 1
allele frequency: 8.256002113536541e-6
allele num: 121124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1136-31A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6889A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1187-31A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6313A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6313A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.308-31A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1136-31A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6889A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6748A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-212-31A>C
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ

3-57857343-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857343
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857343
    reference: chr 3
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1136-20G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1136-20G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6759G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1187-20G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.308-20G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6900G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6324G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-212-20G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6324G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6900G>A
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6098
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

3-57857346-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857346
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857346
    reference: chr 3
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6903G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6903G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1136-17G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6327G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6327G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6762G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1187-17G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-212-17G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1136-17G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.308-17G>A
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

3-57857346-GTTTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857346
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857342
    reference: chr 3
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-212-9_-212-6delCTTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1136-9_1136-6delCTTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1136-9_1136-6delCTTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6335_211+6338delCTTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1187-9_1187-6delCTTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6911_131+6914delCTTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6911_1135+6914delCTTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.308-9_308-6delCTTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6335_1237+6338delCTTT
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6770_1537+6773delCTTT
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3926
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: GTTTC
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-57857350-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857350
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857350
    reference: chr 3
allele count: 1
allele frequency: 8.245790523937529e-6
allele num: 121274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.308-13C>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6766C>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1136-13C>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-212-13C>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6907C>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6331C>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6907C>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6331C>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1136-13C>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1187-13C>A
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3622
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

3-57857350-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857350
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857350
    reference: chr 3
allele count: 2
allele frequency: 1.649158104787506e-5
allele num: 121274
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6907C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1136-13C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6766C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1187-13C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6331C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6907C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6331C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.308-13C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-212-13C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1136-13C>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-57857352-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857352
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857352
    reference: chr 3
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6333T>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6909T>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1136-11T>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.308-11T>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-212-11T>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6333T>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6909T>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1187-11T>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6768T>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1136-11T>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3928
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4766
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-57857358-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857358
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857358
    reference: chr 3
allele count: 15
allele frequency: 1.236644242184408e-4
allele num: 121296
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-212-5A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1187-5A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1136-5A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1136-5A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6339A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.308-5A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6915A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6774A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6339A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6915A>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1136-5A>G
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

3-57857360-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857360
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857360
    reference: chr 3
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-212-3T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6341T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1136-3T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6341T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1187-3T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6776T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6917T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.308-3T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6917T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1136-3T>C
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4774
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1136-3T>C
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-57857365-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857365
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857365
    reference: chr 3
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1138C>A
  hgvsp: ENSP00000295952.3:p.His380Asn
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6346C>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6922C>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-210C>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.310C>A
  hgvsp: ENSP00000419849.1:p.His104Asn
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1138C>A
  hgvsp: ENSP00000295951.3:p.His380Asn
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1189C>A
  hgvsp: ENSP00000398661.1:p.His397Asn
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6346C>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6781C>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6922C>A
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His380Asn
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-57857370-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857370
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857370
    reference: chr 3
allele count: 3
allele frequency: 2.472921509471289e-5
allele num: 121314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1143G>C
  hgvsp: ENSP00000295952.3:p.Leu381Phe
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6351G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6927G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-205G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6351G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1143G>C
  hgvsp: ENSP00000295951.3:p.Leu381Phe
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6786G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.315G>C
  hgvsp: ENSP00000419849.1:p.Leu105Phe
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1194G>C
  hgvsp: ENSP00000398661.1:p.Leu398Phe
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6927G>C
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu381Phe
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

3-57857376-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857376
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857376
    reference: chr 3
allele count: 3
allele frequency: 2.473125370968806e-5
allele num: 121304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.321A>G
  hgvsp: ENST00000465203.1:c.321A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6933A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6792A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1149A>G
  hgvsp: ENST00000295952.3:c.1149A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1149A>G
  hgvsp: ENST00000295951.3:c.1149A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6357A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6357A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-199A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1200A>G
  hgvsp: ENST00000428312.1:c.1200A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6933A>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser383Ser
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

3-57857377-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857377
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857377
    reference: chr 3
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1150A>G
  hgvsp: ENSP00000295951.3:p.Lys384Glu
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6793A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.322A>G
  hgvsp: ENSP00000419849.1:p.Lys108Glu
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6934A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6934A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6358A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-198A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1201A>G
  hgvsp: ENSP00000398661.1:p.Lys401Glu
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1150A>G
  hgvsp: ENSP00000295952.3:p.Lys384Glu
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6358A>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4783
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys384Glu
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

3-57857379-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857379
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857379
    reference: chr 3
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.324G>C
  hgvsp: ENSP00000419849.1:p.Lys108Asn
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6936G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6360G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6936G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1152G>C
  hgvsp: ENSP00000295951.3:p.Lys384Asn
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6360G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1152G>C
  hgvsp: ENSP00000295952.3:p.Lys384Asn
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-196G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1203G>C
  hgvsp: ENSP00000398661.1:p.Lys401Asn
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6795G>C
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5362
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5127
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10387
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys384Asn
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

3-57857385-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857385
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857385
    reference: chr 3
allele count: 1
allele frequency: 8.271572260455268e-6
allele num: 120896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6942C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1158C>T
  hgvsp: ENST00000295952.3:c.1158C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6942C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1158C>T
  hgvsp: ENST00000295951.3:c.1158C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6801C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1209C>T
  hgvsp: ENST00000428312.1:c.1209C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6366C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.330C>T
  hgvsp: ENST00000465203.1:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6366C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-190C>T
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5935
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly386Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

3-57857389-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857389
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857389
    reference: chr 3
allele count: 15
allele frequency: 1.237276671560783e-4
allele num: 121234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-186G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.334G>A
  hgvsp: ENSP00000419849.1:p.Asp112Asn
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6805G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1162G>A
  hgvsp: ENSP00000295952.3:p.Asp388Asn
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1213G>A
  hgvsp: ENSP00000398661.1:p.Asp405Asn
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1162G>A
  hgvsp: ENSP00000295951.3:p.Asp388Asn
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6946G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6946G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6370G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6370G>A
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10780
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22860
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp388Asn
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

3-57857390-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857390
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857390
    reference: chr 3
allele count: 217
allele frequency: 1.98561572388046e-3
allele num: 109286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6947A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1214A>G
  hgvsp: ENSP00000398661.1:p.Asp405Gly
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6371A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1163A>G
  hgvsp: ENSP00000295951.3:p.Asp388Gly
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6806A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-185A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6947A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1163A>G
  hgvsp: ENSP00000295952.3:p.Asp388Gly
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.335A>G
  hgvsp: ENSP00000419849.1:p.Asp112Gly
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6371A>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 4.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 6.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 8765
  bin: 3.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 6.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4514
  bin: 5.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 5.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 4.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 9278
  bin: 3.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 3838
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 3.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 3.25e1
  variant carriers: 22
hgvs: p.Asp388Gly
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

3-57857391-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857391
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857391
    reference: chr 3
allele count: 1
allele frequency: 8.264326209484141e-6
allele num: 121002
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1164C>G
  hgvsp: ENSP00000295952.3:p.Asp388Glu
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1164C>G
  hgvsp: ENSP00000295951.3:p.Asp388Glu
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6372C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.336C>G
  hgvsp: ENSP00000419849.1:p.Asp112Glu
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6807C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-184C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6372C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1215C>G
  hgvsp: ENSP00000398661.1:p.Asp405Glu
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6948C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6948C>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5195
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp388Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-57857395-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857395
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857395
    reference: chr 3
allele count: 2
allele frequency: 1.650355651642929e-5
allele num: 121186
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1168A>G
  hgvsp: ENSP00000295951.3:p.Thr390Ala
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1219A>G
  hgvsp: ENSP00000398661.1:p.Thr407Ala
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6952A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6811A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1168A>G
  hgvsp: ENSP00000295952.3:p.Thr390Ala
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-180A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6952A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.340A>G
  hgvsp: ENSP00000419849.1:p.Thr114Ala
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6376A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6376A>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr390Ala
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

3-57857401-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857401
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857401
    reference: chr 3
allele count: 7
allele frequency: 5.944192523904146e-5
allele num: 117762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6958A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-174A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6382A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1174A>T
  hgvsp: ENSP00000295952.3:p.Ile392Phe
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.346A>T
  hgvsp: ENSP00000419849.1:p.Ile116Phe
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1174A>T
  hgvsp: ENSP00000295951.3:p.Ile392Phe
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6958A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1225A>T
  hgvsp: ENSP00000398661.1:p.Ile409Phe
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6817A>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6382A>T
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7786
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10563
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20496
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2628
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile392Phe
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

3-57857404-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857404
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857404
    reference: chr 3
allele count: 6
allele frequency: 5.02992807202857e-5
allele num: 119286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6820C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1177C>T
  hgvsp: ENSP00000295952.3:p.His393Tyr
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1177C>T
  hgvsp: ENSP00000295951.3:p.His393Tyr
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.349C>T
  hgvsp: ENSP00000419849.1:p.His117Tyr
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1228C>T
  hgvsp: ENSP00000398661.1:p.His410Tyr
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6385C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6961C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-171C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6385C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6961C>T
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5386
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11970
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His393Tyr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

3-57857414-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857414
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857414
    reference: chr 3
allele count: 2
allele frequency: 1.650437365901964e-5
allele num: 121180
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1187T>C
  hgvsp: ENSP00000295951.3:p.Ile396Thr
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6395T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1187T>C
  hgvsp: ENSP00000295952.3:p.Ile396Thr
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6395T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6830T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1238T>C
  hgvsp: ENSP00000398661.1:p.Ile413Thr
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6971T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-161T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6971T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.359T>C
  hgvsp: ENSP00000419849.1:p.Ile120Thr
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9267
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2768
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12392
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile396Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD

3-57857419-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857419
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857419
    reference: chr 3
allele count: 1
allele frequency: 8.253957772752034e-6
allele num: 121154
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1192T>C
  hgvsp: ENSP00000295951.3:p.Cys398Arg
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6400T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6976T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1243T>C
  hgvsp: ENSP00000398661.1:p.Cys415Arg
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6976T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-156T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1192T>C
  hgvsp: ENSP00000295952.3:p.Cys398Arg
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6835T>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.364T>C
  hgvsp: ENSP00000419849.1:p.Cys122Arg
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6400T>C
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7555
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5202
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3734
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys398Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

3-57857433-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857433
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857433
    reference: chr 3
allele count: 1
allele frequency: 8.261049153242462e-6
allele num: 121050
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-150+8C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1198+8C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1249+8C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6990C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6414C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1198+8C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6990C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6414C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6849C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.370+8C>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7556
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10934
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1198+8C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

3-57857434-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857434
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857434
    reference: chr 3
allele count: 1
allele frequency: 8.261185645363822e-6
allele num: 121048
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6850A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.370+9A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1198+9A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-150+9A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6991A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6415A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1249+9A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6991A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6415A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1198+9A>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7555
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6287
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21434
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

3-57857439-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857439
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857439
    reference: chr 3
allele count: 4010
allele frequency: 3.31421392796337e-2
allele num: 120994
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.370+14A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1198+14A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+6996A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6420A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1249+14A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6420A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-150+14A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1198+14A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6855A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+6996A>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 8.75e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 9.75e1
  variant carriers: 498
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 6.75e1
  variant carriers: 305
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 4.75e1
  variant carriers: 351
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10486
  bin: 3.25e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 7.25e1
  variant carriers: 291
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 8.25e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 7.75e1
  variant carriers: 229
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 4.25e1
  variant carriers: 285
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 6.25e1
  variant carriers: 369
genotype depth: GenotypeDepth
  all individuals: 8946
  bin: 3.75e1
  variant carriers: 195
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 5.75e1
  variant carriers: 409
genotype depth: GenotypeDepth
  all individuals: 9561
  bin: 2.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 5.25e1
  variant carriers: 401
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23197
  bin: 9.75e1
  variant carriers: 3901
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 98
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

3-57857467-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857467
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857467
    reference: chr 3
allele count: 5
allele frequency: 4.139963899514796e-5
allele num: 120774
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.370+42G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6883G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+7024G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+7024G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6448G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1198+42G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6448G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1249+42G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1198+42G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-150+42G>A
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10462
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7515
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3609
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

3-57857468-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857468
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857468
    reference: chr 3
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6449G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1198+43G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-150+43G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6884G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1249+43G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1198+43G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+7025G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+7025G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6449G>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.370+43G>C
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3764
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5933
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

3-57857473-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857473
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857473
    reference: chr 3
allele count: 21
allele frequency: 1.740225732137826e-4
allele num: 120674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-150+48A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.370+48A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6889A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+7030A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6454A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1198+48A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1198+48A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1249+48A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+7030A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6454A>G
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9128
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8383
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5293
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9850
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7493
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/3-57857474-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57857474
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57857474
    reference: chr 3
allele count: 1
allele frequency: 8.286789200656313e-6
allele num: 120674
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1537+6890A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1237+6455A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1135+7031A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1198+49A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.131+7031A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1249+49A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.211+6455A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-150+49A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1198+49A>C
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.370+49A>C
  variant of: http://identifiers.org/hgnc/16643
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7490
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5014
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3759
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20725
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

3-57875720-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57875720
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57875720
    reference: chr 3
allele count: 4
allele frequency: 3.297826732183491e-5
allele num: 121292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000472546
  gene symbol: SLMAP
  hgvsc: ENST00000472546.1:n.3A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.212-48A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000388978
  ensembl transcript: ENST00000442599
  gene symbol: SLMAP
  hgvsc: ENST00000442599.2:c.-197A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.371-48A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000459654
  gene symbol: SLMAP
  hgvsc: ENST00000459654.1:n.3A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1250-48A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.132-6518A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1199-48A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1238-48A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1199-48A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-149-48A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1538-53A>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1136-48A>G
  variant of: http://identifiers.org/hgnc/16643
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21558
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4896
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

3-57875726-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57875726
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57875726
    reference: chr 3
allele count: 2
allele frequency: 1.648777431534517e-5
allele num: 121302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1136-42C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000388978
  ensembl transcript: ENST00000442599
  gene symbol: SLMAP
  hgvsc: ENST00000442599.2:c.-191C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1199-42C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1238-42C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-149-42C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000459654
  gene symbol: SLMAP
  hgvsc: ENST00000459654.1:n.9C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1538-47C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.371-42C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000472546
  gene symbol: SLMAP
  hgvsc: ENST00000472546.1:n.9C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.132-6512C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1199-42C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1250-42C>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.212-42C>T
  variant of: http://identifiers.org/hgnc/16643
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD

3-57875728-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57875728
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57875728
    reference: chr 3
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1250-40C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1136-40C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000459654
  gene symbol: SLMAP
  hgvsc: ENST00000459654.1:n.11C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1238-40C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1199-40C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-149-40C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.212-40C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.371-40C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000388978
  ensembl transcript: ENST00000442599
  gene symbol: SLMAP
  hgvsc: ENST00000442599.2:c.-189C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000472546
  gene symbol: SLMAP
  hgvsc: ENST00000472546.1:n.11C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1538-45C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1199-40C>G
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.132-6510C>G
  variant of: http://identifiers.org/hgnc/16643
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

3-57875730-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57875730
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57875730
    reference: chr 3
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000459654
  gene symbol: SLMAP
  hgvsc: ENST00000459654.1:n.13G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1250-38G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.212-38G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1199-38G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1136-38G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-149-38G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000388978
  ensembl transcript: ENST00000442599
  gene symbol: SLMAP
  hgvsc: ENST00000442599.2:c.-187G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1199-38G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000472546
  gene symbol: SLMAP
  hgvsc: ENST00000472546.1:n.13G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.132-6508G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.371-38G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1538-43G>A
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1238-38G>A
  variant of: http://identifiers.org/hgnc/16643
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

3-57875736-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 57875736
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 57875736
    reference: chr 3
allele count: 2
allele frequency: 1.648532805802836e-5
allele num: 121320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000472546
  gene symbol: SLMAP
  hgvsc: ENST00000472546.1:n.19G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000389978
  ensembl transcript: ENST00000416658
  gene symbol: SLMAP
  hgvsc: ENST00000416658.1:c.132-6502G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000373224
  ensembl transcript: ENST00000383718
  gene symbol: SLMAP
  hgvsc: ENST00000383718.3:c.1238-32G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000398661
  ensembl transcript: ENST00000428312
  gene symbol: SLMAP
  hgvsc: ENST00000428312.1:c.1250-32G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000459654
  gene symbol: SLMAP
  hgvsc: ENST00000459654.1:n.19G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295951
  ensembl transcript: ENST00000295951
  gene symbol: SLMAP
  hgvsc: ENST00000295951.3:c.1199-32G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000388978
  ensembl transcript: ENST00000442599
  gene symbol: SLMAP
  hgvsc: ENST00000442599.2:c.-181G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412945
  ensembl transcript: ENST00000449503
  gene symbol: SLMAP
  hgvsc: ENST00000449503.2:c.1136-32G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000295952
  ensembl transcript: ENST00000295952
  gene symbol: SLMAP
  hgvsc: ENST00000295952.3:c.1199-32G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000467901
  gene symbol: SLMAP
  hgvsc: ENST00000467901.1:n.1538-37G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000419849
  ensembl transcript: ENST00000465203
  gene symbol: SLMAP
  hgvsc: ENST00000465203.1:c.371-32G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl protein: ENSP00000412342
  ensembl transcript: ENST00000416870
  gene symbol: SLMAP
  hgvsc: ENST00000416870.1:c.-149-32G>T
  variant of: http://identifiers.org/hgnc/16643
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163681
  ensembl transcript: ENST00000475055
  gene symbol: SLMAP
  hgvsc: ENST00000475055.1:n.212-32G>T
  variant of: http://identifiers.org/hgnc/16643
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4158
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7039
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16707
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2726
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3660
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3015
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65282
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.352e1

QD
type: SiteQuality
SIO_000300: 2.8e-1

FS
type: SiteQuality
SIO_000300: 2.286e0

VQSLOD
type: SiteQuality
SIO_000300: -1.295e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.307e0

MQRankSum
type: SiteQuality
SIO_000300: -1.274e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
SIO_000300: 2.619651e6

GenotypeQuality
all individuals: 439
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4081
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2979
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2090
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16652
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17094
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2663
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.082725060827251e-5
allele num: 16440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64982
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 8.856e0

VQSLOD
type: SiteQuality
SIO_000300: -2.316e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

DP
type: SiteQuality
SIO_000300: 2.618988e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.326e0

QD
type: SiteQuality
SIO_000300: 1.29e0

GenotypeQuality
all individuals: 16592
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 94
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2975
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1796
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 645
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4049
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3593
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6667
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.088230752601834e-5
allele num: 64762
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.986e1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.633e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.014e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.78e-1

DP
type: SiteQuality
SIO_000300: 2.600198e6

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

GenotypeQuality
all individuals: 4057
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3592
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2482
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2643
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2974
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16044
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16586
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64752
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.083893344894862e-4
allele num: 9226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.046e0

MQ
type: SiteQuality
SIO_000300: 5.87e1

VQSLOD
type: SiteQuality
SIO_000300: -1.94e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.071e0

QD
type: SiteQuality
SIO_000300: 1.956e1

DP
type: SiteQuality
SIO_000300: 2.593546e6

GenotypeQuality
all individuals: 1833
bin: 5.25e1
variant carriers: 354

GenotypeQuality
all individuals: 1352
bin: 6.75e1
variant carriers: 183

GenotypeQuality
all individuals: 836
bin: 8.25e1
variant carriers: 132

GenotypeQuality
all individuals: 3645
bin: 1.25e1
variant carriers: 768

GenotypeQuality
all individuals: 3352
bin: 1.75e1
variant carriers: 728

GenotypeQuality
all individuals: 1615
bin: 5.75e1
variant carriers: 302

GenotypeQuality
all individuals: 2301
bin: 4.25e1
variant carriers: 478

GenotypeQuality
all individuals: 2214
bin: 6.25e1
variant carriers: 238

GenotypeQuality
all individuals: 2007
bin: 4.75e1
variant carriers: 422

GenotypeQuality
all individuals: 4507
bin: 7.5e0
variant carriers: 718

GenotypeQuality
all individuals: 4495
bin: 2.25e1
variant carriers: 794

GenotypeQuality
all individuals: 5631
bin: 9.75e1
variant carriers: 856

GenotypeQuality
all individuals: 941
bin: 7.75e1
variant carriers: 153

GenotypeQuality
all individuals: 1072
bin: 7.25e1
variant carriers: 197

GenotypeQuality
all individuals: 641
bin: 9.25e1
variant carriers: 92

GenotypeQuality
all individuals: 2899
bin: 3.25e1
variant carriers: 589

Other
type: Population
allele count: 48
allele frequency: 9.056603773584905e-2
allele num: 530
num of homozygotes: 0

Latino
type: Population
allele count: 676
allele frequency: 1.035856573705179e-1
allele num: 6526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 179
allele frequency: 5.33373063170441e-2
allele num: 3356
num of homozygotes: 0

African
type: Population
allele count: 499
allele frequency: 9.846093133385951e-2
allele num: 5068
num of homozygotes: 0

East Asian
type: Population
allele count: 591
allele frequency: 1.281995661605206e-1
allele num: 4610
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 2989
allele frequency: 8.236428768255717e-2
allele num: 36290
num of homozygotes: 0

South Asian
type: Population
allele count: 993
allele frequency: 9.235491071428571e-2
allele num: 10752
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.5e-2

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 2.352207e6

FS
type: SiteQuality
SIO_000300: 1.006e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

QD
type: SiteQuality
SIO_000300: 1.55e0

GenotypeQuality
all individuals: 4507
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 1352
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2214
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14579
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 3645
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 3352
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4495
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2899
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 5631
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 735
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1833
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1072
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2518
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 941
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.532332209623046e-4
allele num: 6526
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.338394793926247e-4
allele num: 4610
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 1.488095238095238e-3
allele num: 10752
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.946329913180742e-4
allele num: 5068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.928906034720309e-4
allele num: 36290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3356
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.886792452830189e-3
allele num: 530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

FS
type: SiteQuality
SIO_000300: 1.006e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

QD
type: SiteQuality
SIO_000300: 1.55e0

DP
type: SiteQuality
SIO_000300: 2.352207e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 3645
bin: 1.25e1
variant carriers: 1232

GenotypeQuality
all individuals: 2899
bin: 3.25e1
variant carriers: 1325

GenotypeQuality
all individuals: 1072
bin: 7.25e1
variant carriers: 715

GenotypeQuality
all individuals: 1833
bin: 5.25e1
variant carriers: 1067

GenotypeQuality
all individuals: 4507
bin: 7.5e0
variant carriers: 1246

GenotypeQuality
all individuals: 941
bin: 7.75e1
variant carriers: 654

GenotypeQuality
all individuals: 3107
bin: 2.75e1
variant carriers: 1340

GenotypeQuality
all individuals: 2518
bin: 3.75e1
variant carriers: 1291

GenotypeQuality
all individuals: 2301
bin: 4.25e1
variant carriers: 1225

GenotypeQuality
all individuals: 3352
bin: 1.75e1
variant carriers: 1202

GenotypeQuality
all individuals: 2214
bin: 6.25e1
variant carriers: 917

GenotypeQuality
all individuals: 836
bin: 8.25e1
variant carriers: 591

GenotypeQuality
all individuals: 5631
bin: 9.75e1
variant carriers: 4486

GenotypeQuality
all individuals: 1352
bin: 6.75e1
variant carriers: 821

GenotypeQuality
all individuals: 735
bin: 8.75e1
variant carriers: 556

GenotypeQuality
all individuals: 641
bin: 9.25e1
variant carriers: 495

European (Non-Finnish)
type: Population
allele count: 9980
allele frequency: 2.75006888950124e-1
allele num: 36290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 566
allele frequency: 1.686531585220501e-1
allele num: 3356
num of homozygotes: 0

South Asian
type: Population
allele count: 3782
allele frequency: 3.517485119047619e-1
allele num: 10752
num of homozygotes: 0

Other
type: Population
allele count: 145
allele frequency: 2.735849056603774e-1
allele num: 530
num of homozygotes: 0

East Asian
type: Population
allele count: 1137
allele frequency: 2.466377440347071e-1
allele num: 4610
num of homozygotes: 1

Latino
type: Population
allele count: 1969
allele frequency: 3.017162120747778e-1
allele num: 6526
num of homozygotes: 0

African
type: Population
allele count: 1211
allele frequency: 2.389502762430939e-1
allele num: 5068
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

DP
type: SiteQuality
SIO_000300: 2.352207e6

VQSLOD
type: SiteQuality
SIO_000300: 3.5e-2

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.55e0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

FS
type: SiteQuality
SIO_000300: 1.006e0

GenotypeQuality
all individuals: 4495
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1352
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2518
bin: 3.75e1
variant carriers: 6

GenotypeQuality
all individuals: 3352
bin: 1.75e1
variant carriers: 8

GenotypeQuality
all individuals: 641
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4507
bin: 7.5e0
variant carriers: 18

GenotypeQuality
all individuals: 1833
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1615
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 836
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2899
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2301
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2214
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 941
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2007
bin: 4.75e1
variant carriers: 11

GenotypeQuality
all individuals: 735
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 5631
bin: 9.75e1
variant carriers: 6

South Asian
type: Population
allele count: 18
allele frequency: 1.674107142857143e-3
allele num: 10752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 1.183898973954223e-3
allele num: 5068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3356
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 1.084598698481562e-3
allele num: 4610
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 1.379098988660742e-3
allele num: 6526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 37
allele frequency: 1.019564618352163e-3
allele num: 36290
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.13e-1

QD
type: SiteQuality
SIO_000300: 1.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.5e-2

FS
type: SiteQuality
SIO_000300: 1.006e0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

DP
type: SiteQuality
SIO_000300: 2.352207e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 32972
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7696
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2910
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 96
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.304375236414071e-5
allele num: 15862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59858
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.425e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

DP
type: SiteQuality
SIO_000300: 1.76898e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.74e0

QD
type: SiteQuality
SIO_000300: 5.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.625e0

GenotypeQuality
all individuals: 336
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4946
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2080
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2637
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11402
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55246
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.473622163277336e-4
allele num: 6786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10436
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.316e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.151e0

QD
type: SiteQuality
SIO_000300: 3.3e0

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

DP
type: SiteQuality
SIO_000300: 1.636639e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2395
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28372
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13921
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2627
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 351
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.690753378830456e-5
allele num: 14946
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.549664e6

MQRankSum
type: SiteQuality
SIO_000300: -1.447e0

VQSLOD
type: SiteQuality
SIO_000300: -2.029e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.287e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.45e-1

MQ
type: SiteQuality
SIO_000300: 5.787e1

GenotypeQuality
all individuals: 312
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2609
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 484
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28869
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14146
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4237
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.538461538461539e-4
allele num: 6500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5930
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.491e0

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-2

QD
type: SiteQuality
SIO_000300: 1.345e1

DP
type: SiteQuality
SIO_000300: 1.542676e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.76e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

GenotypeQuality
all individuals: 2502
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1135
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17037
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2903
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25807
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3664
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.977926342023023e-5
allele num: 50558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.832e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

DP
type: SiteQuality
SIO_000300: 1.450771e6

MQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

FS
type: SiteQuality
SIO_000300: 1.22747e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: -7.044e1

QD
type: SiteQuality
SIO_000300: 1.4e-1

GenotypeQuality
all individuals: 303
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3509
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20127
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2577
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 484
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21692
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.111308166539988e-5
allele num: 47364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.921e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.328e1

VQSLOD
type: SiteQuality
SIO_000300: -2.411e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.29e-1

DP
type: SiteQuality
SIO_000300: 1.340729e6

GenotypeQuality
all individuals: 592
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21029
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2576
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20154
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3681
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.15526531316005e-5
allele num: 46398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13912
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.308888e6

QD
type: SiteQuality
SIO_000300: 1.298e1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

GenotypeQuality
all individuals: 953
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2798
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18687
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22403
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.239039899691012e-5
allele num: 44662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5134
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.262092e6

VQSLOD
type: SiteQuality
SIO_000300: 2.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

GenotypeQuality
all individuals: 4335
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18228
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2695
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2576
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 475
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22817
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7696
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.071251035625518e-4
allele num: 4828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.275312855517634e-5
allele num: 43950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5082
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.164e-1

QD
type: SiteQuality
SIO_000300: 1.645e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.924e1

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.165e0

DP
type: SiteQuality
SIO_000300: 1.246942e6

GenotypeQuality
all individuals: 1541
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6463
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12011
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27094
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1956
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2575
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 341
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.835762419683435e-5
allele num: 12762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.391e1

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.54e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.096411e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.424e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.559e1

GenotypeQuality
all individuals: 2575
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 226
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7264
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27629
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10391
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5934
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4346
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.597699312989295e-4
allele num: 12518
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.059747e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

VQSLOD
type: SiteQuality
SIO_000300: 5.69e-1

FS
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

QD
type: SiteQuality
SIO_000300: 9.119999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.72e-2

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1383
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13921
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3063
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2583
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 754
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.085304970696766e-4
allele num: 9214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13944
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.526e0

MQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

DP
type: SiteQuality
SIO_000300: 7.15899e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.21e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.31e-1

GenotypeQuality
all individuals: 337
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25715
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7067
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2960
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3688
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2583
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 528
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2515
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 9.014423076923077e-4
allele num: 9984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1866
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.11e-2

DP
type: SiteQuality
SIO_000300: 6.50344e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.309e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-2

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.239e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

FS
type: SiteQuality
SIO_000300: 1.245e0

GenotypeQuality
all individuals: 484
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3279
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25228
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4233
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2576
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6089
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.122241086587436e-4
allele num: 9424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1834
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

VQSLOD
type: SiteQuality
SIO_000300: -1.609e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.270000000000001e-2

FS
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 6.38157e5

QD
type: SiteQuality
SIO_000300: 1.236e1

GenotypeQuality
all individuals: 20870
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7994
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3205
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.182592242194891e-4
allele num: 8456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.733e0

VQSLOD
type: SiteQuality
SIO_000300: -2.185e0

DP
type: SiteQuality
SIO_000300: 6.16282e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.88e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 1.738e1

GenotypeQuality
all individuals: 707
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2575
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3295
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2995
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8456
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4084
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1762
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.218620521569583e-4
allele num: 8206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.95e0

MQ
type: SiteQuality
SIO_000300: 5.898e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.98e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 6.16111e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.818e0

QD
type: SiteQuality
SIO_000300: 1.547e1

GenotypeQuality
all individuals: 577
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6073
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.377e1

DP
type: SiteQuality
SIO_000300: 1.85689e5

VQSLOD
type: SiteQuality
SIO_000300: -1.534e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 1.975e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.24e-2

MQ
type: SiteQuality
SIO_000300: 5.855e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6080
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.71370420624152e-4
allele num: 7370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.006e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.311e0

MQRankSum
type: SiteQuality
SIO_000300: 3.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.35e-1

DP
type: SiteQuality
SIO_000300: 1.85351e5

GenotypeQuality
all individuals: 11
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3014
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2863
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.444987775061124e-4
allele num: 4090
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.19e0

DP
type: SiteQuality
SIO_000300: 1.34054e5

QD
type: SiteQuality
SIO_000300: 2.041e1

GenotypeQuality
all individuals: 272
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3163
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2260
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.849002849002849e-3
allele num: 702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-2

QD
type: SiteQuality
SIO_000300: 1.03e1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.84e-2

FS
type: SiteQuality
SIO_000300: 4.912e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

MQ
type: SiteQuality
SIO_000300: 5.836e1

DP
type: SiteQuality
SIO_000300: 1.25562e5

GenotypeQuality
all individuals: 69
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 141
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3233
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.588814744200826e-4
allele num: 6294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3804
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.299e0

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 5.694e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.416e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.72e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.14e-1

FS
type: SiteQuality
SIO_000300: 4.603e0

DP
type: SiteQuality
SIO_000300: 1.19834e5

QD
type: SiteQuality
SIO_000300: 1.357e1

GenotypeQuality
all individuals: 1341
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 123
bin: 9.75e1
variant carriers: 57

GenotypeQuality
all individuals: 128
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1056
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2903
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 657
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 8.75e1
variant carriers: 3

Latino
type: Population
allele count: 9
allele frequency: 5.113636363636364e-2
allele num: 176
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 8.928571428571428e-3
allele num: 112
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.289473684210526e-3
allele num: 608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 1.818181818181818e-2
allele num: 220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 4.839685420447671e-3
allele num: 3306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

South Asian
type: Population
allele count: 29
allele frequency: 5.055788005578801e-3
allele num: 5736
num of homozygotes: 1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.43e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.99e0

DP
type: SiteQuality
SIO_000300: 9.8113e4

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.573e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

GenotypeQuality
all individuals: 281
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2620
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 241
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 9.117432530999271e-4
allele num: 5484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.341e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

DP
type: SiteQuality
SIO_000300: 9.5138e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.69e-2

FS
type: SiteQuality
SIO_000300: 1.5842e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.803e0

GenotypeQuality
all individuals: 344
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9766
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2717
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4689
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5969
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22852
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3889
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212856276531231e-4
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

QD
type: SiteQuality
SIO_000300: 2.159e1

VQSLOD
type: SiteQuality
SIO_000300: -8.154e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 2.524609e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 7.13e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
all individuals: 174
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3906
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3601
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10389
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2725
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4716
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22856
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.026e0

FS
type: SiteQuality
SIO_000300: 1.469e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.76e-1

DP
type: SiteQuality
SIO_000300: 2.530375e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.229e1

GenotypeQuality
all individuals: 3916
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2737
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4744
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6053
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3616
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5173
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22862
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10795
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.650646593321752e-5
allele num: 10362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.577e1

VQSLOD
type: SiteQuality
SIO_000300: -5.571e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.185e0

MQ
type: SiteQuality
SIO_000300: 5.921e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 2.533705e6

MQRankSum
type: SiteQuality
SIO_000300: -5.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.087e0

GenotypeQuality
all individuals: 2743
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3922
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3615
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4755
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6073
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10959
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5187
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22866
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.16e1

DP
type: SiteQuality
SIO_000300: 2.536169e6

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22867
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11209
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5208
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3927
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3627
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4760
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.351e0

DP
type: SiteQuality
SIO_000300: 2.539854e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.908e0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.025e1

MQ
type: SiteQuality
SIO_000300: 5.981e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
all individuals: 22873
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11246
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3625
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3926
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4762
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5210
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6114
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.176e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.112e0

MQ
type: SiteQuality
SIO_000300: 5.64e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.631e0

QD
type: SiteQuality
SIO_000300: 1.357e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 2.540509e6

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6114
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11246
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22873
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2746
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5210
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3625
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4762
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 2.176e0

MQ
type: SiteQuality
SIO_000300: 5.64e1

DP
type: SiteQuality
SIO_000300: 2.540509e6

MQRankSum
type: SiteQuality
SIO_000300: -1.631e0

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.98e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.112e0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6118
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5209
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11271
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3927
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22874
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4764
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.541151e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.96e-1

FS
type: SiteQuality
SIO_000300: 3.227e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.54e-1

QD
type: SiteQuality
SIO_000300: 1.265e1

GenotypeQuality
all individuals: 3927
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3622
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6118
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11271
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5209
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22874
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4764
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 3.227e0

QD
type: SiteQuality
SIO_000300: 1.265e1

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 2.541151e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e-1

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6126
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3622
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5214
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11291
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22872
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.541302e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.462e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-1

QD
type: SiteQuality
SIO_000300: 1.703e1

FS
type: SiteQuality
SIO_000300: 8.249000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3624
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3928
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11296
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5219
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22883
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6124
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.949142377353964e-4
allele num: 66696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728907330567082e-4
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

MQRankSum
type: SiteQuality
SIO_000300: -2.61e-1

DP
type: SiteQuality
SIO_000300: 2.542513e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e-1

QD
type: SiteQuality
SIO_000300: 1.48e1

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5222
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3928
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11311
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6129
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2748
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3625
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22876
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.195e1

MQ
type: SiteQuality
SIO_000300: 5.893e1

DP
type: SiteQuality
SIO_000300: 2.542338e6

MQRankSum
type: SiteQuality
SIO_000300: -1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.843e-1

FS
type: SiteQuality
SIO_000300: 4.811e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3625
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3928
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22876
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5222
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6133
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11306
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.308e0

DP
type: SiteQuality
SIO_000300: 2.542435e6

QD
type: SiteQuality
SIO_000300: 1.437e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.188e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.741e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.080000000000001e-1

GenotypeQuality
all individuals: 2747
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22878
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3927
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6136
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3627
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11303
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5220
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4779
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.497751124437781e-5
allele num: 66700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.62e-1

FS
type: SiteQuality
SIO_000300: 4.69e-1

MQ
type: SiteQuality
SIO_000300: 5.768e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.153e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

QD
type: SiteQuality
SIO_000300: 1.102e1

DP
type: SiteQuality
SIO_000300: 2.54273e6

GenotypeQuality
all individuals: 3927
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4782
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11291
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22877
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5222
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3626
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6137
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.592912705272256e-4
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.822e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.115e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.611e0

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

FS
type: SiteQuality
SIO_000300: 2.305e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.42e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.29e-1

DP
type: SiteQuality
SIO_000300: 2.542717e6

GenotypeQuality
all individuals: 22874
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3928
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6137
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5223
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11277
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3628
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

FS
type: SiteQuality
SIO_000300: 2.963e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.613e0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 2.542507e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.56e-1

QD
type: SiteQuality
SIO_000300: 1.364e1

GenotypeQuality
all individuals: 134
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4720
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3918
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22860
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3554
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5924
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2729
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.86e0

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

FS
type: SiteQuality
SIO_000300: 5.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.54e0

VQSLOD
type: SiteQuality
SIO_000300: -2.39e0

DP
type: SiteQuality
SIO_000300: 2.56026e6

MQ
type: SiteQuality
SIO_000300: 5.848e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.611e0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2728
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22725
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3550
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3910
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5118
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11047
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4716
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505343971097396e-5
allele num: 66430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e-1

QD
type: SiteQuality
SIO_000300: 9.9e0

DP
type: SiteQuality
SIO_000300: 2.565522e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.511e0

VQSLOD
type: SiteQuality
SIO_000300: 1.36e-1

FS
type: SiteQuality
SIO_000300: 4.159e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.924e1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3556
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3912
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5123
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5957
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2728
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4724
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11248
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 9.085402786190188e-4
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.707e1

MQ
type: SiteQuality
SIO_000300: 5.918e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.354e0

DP
type: SiteQuality
SIO_000300: 2.547228e6

QD
type: SiteQuality
SIO_000300: 8.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.632e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

FS
type: SiteQuality
SIO_000300: 5.723e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e0

MQRankSum
type: SiteQuality
SIO_000300: 7.54e-1

GenotypeQuality
all individuals: 1431
bin: 4.25e1
variant carriers: 22

GenotypeQuality
all individuals: 1478
bin: 4.75e1
variant carriers: 18

GenotypeQuality
all individuals: 1085
bin: 2.75e1
variant carriers: 34

GenotypeQuality
all individuals: 849
bin: 1.75e1
variant carriers: 32

GenotypeQuality
all individuals: 745
bin: 1.25e1
variant carriers: 55

GenotypeQuality
all individuals: 718
bin: 7.5e0
variant carriers: 45

GenotypeQuality
all individuals: 1601
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2813
bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 3695
bin: 2.5e0
variant carriers: 40

GenotypeQuality
all individuals: 4543
bin: 6.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3397
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2733
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2060
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1726
bin: 5.75e1
variant carriers: 16

GenotypeQuality
all individuals: 15674
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1041
bin: 2.25e1
variant carriers: 33

GenotypeQuality
all individuals: 8723
bin: 6.25e1
variant carriers: 6

East Asian
type: Population
allele count: 18
allele frequency: 2.265290712308079e-3
allele num: 7946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 1.027845262567744e-3
allele num: 10702
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.23787910047452e-3
allele num: 9694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 30
allele frequency: 6.147540983606557e-3
allele num: 4880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 119
allele frequency: 1.987839101964453e-3
allele num: 59864
num of homozygotes: 0

South Asian
type: Population
allele count: 27
allele frequency: 1.751654340210199e-3
allele num: 15414
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.518e0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e0

FS
type: SiteQuality
SIO_000300: 3.00353e2

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: -4.144e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.95e-2

QD
type: SiteQuality
SIO_000300: 2.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.034e0

DP
type: SiteQuality
SIO_000300: 2.732002e6

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3757
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11346
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21623
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4710
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3765
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.535155050660117e-4
allele num: 6514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.644e2

DP
type: SiteQuality
SIO_000300: 2.59151e6

MQ
type: SiteQuality
SIO_000300: 5.743e1

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.33e0

QD
type: SiteQuality
SIO_000300: 2.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

FS
type: SiteQuality
SIO_000300: 1.86788e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.244e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.501e0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11528
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4752
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3824
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3781
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6236
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5255
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21738
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000030000300003e-5
allele num: 66666
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.462e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQ
type: SiteQuality
SIO_000300: 5.78e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.51e-1

DP
type: SiteQuality
SIO_000300: 2.592784e6

QD
type: SiteQuality
SIO_000300: 1.339e1

GenotypeQuality
all individuals: 3483
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 130
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4463
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 3576
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4890
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5821
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11146
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 289
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538461538461538e-5
allele num: 65000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 1.182033096926714e-3
allele num: 5076
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.336e2

MQ
type: SiteQuality
SIO_000300: 5.574e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.862e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

FS
type: SiteQuality
SIO_000300: 2.71652e2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.878e0

MQRankSum
type: SiteQuality
SIO_000300: -2.016e0

DP
type: SiteQuality
SIO_000300: 2.61987e6

QD
type: SiteQuality
SIO_000300: 7.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

GenotypeQuality
all individuals: 6186
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4625
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 104
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2708
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 20758
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3655
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3665
bin: 9.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510163399679845e-5
allele num: 66218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 9.552923194497516e-4
allele num: 5234
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.547e1

VQSLOD
type: SiteQuality
SIO_000300: -2.92e2

MQRankSum
type: SiteQuality
SIO_000300: -2.698e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e0

DP
type: SiteQuality
SIO_000300: 2.599191e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

FS
type: SiteQuality
SIO_000300: 2.54272e2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.257e0

QD
type: SiteQuality
SIO_000300: 6.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3737
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6337
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21441
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4732
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5203
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3737
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.725734292939116e-5
allele num: 10282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.86e0

DP
type: SiteQuality
SIO_000300: 2.569276e6

MQRankSum
type: SiteQuality
SIO_000300: -2.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.14e0

VQSLOD
type: SiteQuality
SIO_000300: 5.08e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

QD
type: SiteQuality
SIO_000300: 1.634e1

GenotypeQuality
all individuals: 218
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4730
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6338
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21434
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2767
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3736
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12399
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.181e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 2.568887e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.388e0

VQSLOD
type: SiteQuality
SIO_000300: -1.955e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.068e0

GenotypeQuality
all individuals: 5192
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12301
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4722
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21435
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3725
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6292
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3738
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.84e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

QD
type: SiteQuality
SIO_000300: 1.084e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 2.566799e6

GenotypeQuality
all individuals: 5191
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3727
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4723
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3738
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12314
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.99e-1

QD
type: SiteQuality
SIO_000300: 1.587e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 2.327e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.826e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

DP
type: SiteQuality
SIO_000300: 2.566625e6

GenotypeQuality
all individuals: 11858
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4467
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3506
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4903
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5973
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3514
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2586
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 114
allele frequency: 1.724659606656581e-2
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 31
allele frequency: 3.41409691629956e-2
allele num: 908
num of homozygotes: 1

East Asian
type: Population
allele count: 3
allele frequency: 3.481086098862845e-4
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 101
allele frequency: 9.940944881889765e-3
allele num: 10160
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 3256
allele frequency: 4.885954381752701e-2
allele num: 66640
num of homozygotes: 87

Latino
type: Population
allele count: 200
allele frequency: 1.731002250302925e-2
allele num: 11554
num of homozygotes: 1

South Asian
type: Population
allele count: 305
allele frequency: 1.848036839554048e-2
allele num: 16504
num of homozygotes: 7

FS
type: SiteQuality
SIO_000300: 8.88e-1

QD
type: SiteQuality
SIO_000300: 1.569e1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

MQ
type: SiteQuality
SIO_000300: 5.867e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 2.637899e6

GenotypeQuality
all individuals: 533
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5969
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4728
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10096
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20735
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 705
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3767
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2728
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9996
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.813953488372093e-4
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.279e1

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.931e-1

MQ
type: SiteQuality
SIO_000300: 5.734e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-2

DP
type: SiteQuality
SIO_000300: 2.507829e6

GenotypeQuality
all individuals: 3599
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20732
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 207
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9837
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2726
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4727
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.607e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

VQSLOD
type: SiteQuality
SIO_000300: 5.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.359e1

DP
type: SiteQuality
SIO_000300: 2.506231e6

GenotypeQuality
all individuals: 2719
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4717
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1503
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5546
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3758
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3548
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5086
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20740
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 7903
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 1.274581209031318e-3
allele num: 16476
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

DP
type: SiteQuality
SIO_000300: 2.496481e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.21e-1

MQ
type: SiteQuality
SIO_000300: 5.863e1

QD
type: SiteQuality
SIO_000300: 1.638e1

GenotypeQuality
all individuals: 88
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2720
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4722
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5090
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5553
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3545
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8141
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.496314e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.325e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e0

MQ
type: SiteQuality
SIO_000300: 5.889e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.94e-1

QD
type: SiteQuality
SIO_000300: 1.744e1

GenotypeDepth
all individuals: 2957
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 3321
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 343
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1892
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9574
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3369
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4489
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25018
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10962
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 43
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.424536307431204e-4
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

DP
type: SiteQuality
SIO_000300: 2.395161e6

FS
type: SiteQuality
SIO_000300: 4.586e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.01e-1

QD
type: SiteQuality
SIO_000300: 1.451e1

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeDepth
all individuals: 285
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 106
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3321
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3339
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10948
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4411
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9577
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1882
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25460
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.18e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.942e0

DP
type: SiteQuality
SIO_000300: 2.3959e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.329e0

QD
type: SiteQuality
SIO_000300: 1.744e1

GenotypeDepth
all individuals: 497
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 631
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25575
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3335
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3108
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1340
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10939
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9572
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4394
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 3.968e0

DP
type: SiteQuality
SIO_000300: 2.39618e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.475e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.45e0

MQRankSum
type: SiteQuality
SIO_000300: -6.41e-1

QD
type: SiteQuality
SIO_000300: 1.344e1

VQSLOD
type: SiteQuality
SIO_000300: -1.457e0

GenotypeDepth
all individuals: 396
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 285
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21688
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25668
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3111
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4395
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9580
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3334
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10937
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.514e0

MQRankSum
type: SiteQuality
SIO_000300: 9.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.392e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

DP
type: SiteQuality
SIO_000300: 2.396233e6