2-168103760-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103760
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103760
    reference: chr 2
allele count: 1
allele frequency: 8.424315945545221e-6
allele num: 118704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5340T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5340T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5340T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5340T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5192T>C
  hgvsp: ENSP00000387255.1:p.Met1731Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5858T>C
  hgvsp: ENSP00000386840.1:p.Met1953Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5340T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5858T>C
  hgvsp: ENSP00000295237.9:p.Met1953Thr
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3678
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Met1953Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-168103762-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103762
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103762
    reference: chr 2
allele count: 3
allele frequency: 2.527507708898512e-5
allele num: 118694
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5860G>A
  hgvsp: ENSP00000386840.1:p.Ala1954Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5342G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5194G>A
  hgvsp: ENSP00000387255.1:p.Ala1732Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5860G>A
  hgvsp: ENSP00000295237.9:p.Ala1954Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5342G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5342G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5342G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5342G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23098
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala1954Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

2-168103768-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103768
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103768
    reference: chr 2
allele count: 2
allele frequency: 1.685118716613585e-5
allele num: 118686
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5348T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5200T>C
  hgvsp: ENSP00000387255.1:p.Ser1734Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5348T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5866T>C
  hgvsp: ENSP00000295237.9:p.Ser1956Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5866T>C
  hgvsp: ENSP00000386840.1:p.Ser1956Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5348T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5348T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5348T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5814
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2932
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22847
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser1956Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

2-168103772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103772
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103772
    reference: chr 2
allele count: 4
allele frequency: 3.371771528761211e-5
allele num: 118632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5352C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5870C>T
  hgvsp: ENSP00000386840.1:p.Ser1957Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5352C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5352C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5870C>T
  hgvsp: ENSP00000295237.9:p.Ser1957Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5352C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5352C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5204C>T
  hgvsp: ENSP00000387255.1:p.Ser1735Leu
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3493
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7363
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22673
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser1957Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

2-168103773-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103773
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103773
    reference: chr 2
allele count: 2
allele frequency: 1.685772083614295e-5
allele num: 118640
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5871G>A
  hgvsp: ENST00000409195.1:c.5871G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5353G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5353G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5871G>A
  hgvsp: ENST00000295237.9:c.5871G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5353G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5205G>A
  hgvsp: ENST00000409273.1:c.5205G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5353G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5353G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser1957Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

2-168103778-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103778
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103778
    reference: chr 2
allele count: 1
allele frequency: 8.423748231012871e-6
allele num: 118712
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5876A>G
  hgvsp: ENSP00000386840.1:p.Glu1959Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5876A>G
  hgvsp: ENSP00000295237.9:p.Glu1959Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5358A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5210A>G
  hgvsp: ENSP00000387255.1:p.Glu1737Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5358A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5358A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5358A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5358A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22715
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2932
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7400
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu1959Gly
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/2-168103781-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103781
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103781
    reference: chr 2
allele count: 2
allele frequency: 1.684409109284463e-5
allele num: 118736
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5361A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5213A>C
  hgvsp: ENSP00000387255.1:p.Gln1738Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5361A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5879A>C
  hgvsp: ENSP00000386840.1:p.Gln1960Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5361A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5361A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5879A>C
  hgvsp: ENSP00000295237.9:p.Gln1960Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5361A>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln1960Pro
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-168103783-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103783
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103783
    reference: chr 2
allele count: 1
allele frequency: 8.422896802668375e-6
allele num: 118724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5363A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5363A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5215A>G
  hgvsp: ENSP00000387255.1:p.Lys1739Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5881A>G
  hgvsp: ENSP00000386840.1:p.Lys1961Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5363A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5363A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5881A>G
  hgvsp: ENSP00000295237.9:p.Lys1961Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5363A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys1961Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

2-168103785-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103785
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103785
    reference: chr 2
allele count: 1
allele frequency: 8.422896802668375e-6
allele num: 118724
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5883A>G
  hgvsp: ENST00000409195.1:c.5883A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5365A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5883A>G
  hgvsp: ENST00000295237.9:c.5883A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5365A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5217A>G
  hgvsp: ENST00000409273.1:c.5217A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5365A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5365A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5365A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3667
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys1961Lys
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-168103786-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103786
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103786
    reference: chr 2
allele count: 1
allele frequency: 8.424032078714155e-6
allele num: 118708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5366A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5884A>G
  hgvsp: ENSP00000386840.1:p.Thr1962Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5884A>G
  hgvsp: ENSP00000295237.9:p.Thr1962Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5366A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5366A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5218A>G
  hgvsp: ENSP00000387255.1:p.Thr1740Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5366A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5366A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4621
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3666
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr1962Ala
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

2-168103787-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103787
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103787
    reference: chr 2
allele count: 2
allele frequency: 1.684976747320887e-5
allele num: 118696
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5367C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5367C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5885C>G
  hgvsp: ENSP00000295237.9:p.Thr1962Arg
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5367C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5885C>G
  hgvsp: ENSP00000386840.1:p.Thr1962Arg
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5219C>G
  hgvsp: ENSP00000387255.1:p.Thr1740Arg
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5367C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5367C>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9653
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr1962Arg
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

2-168103792-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103792
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103792
    reference: chr 2
allele count: 1
allele frequency: 8.420485356775965e-6
allele num: 118758
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5372A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5372A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5890A>G
  hgvsp: ENSP00000295237.9:p.Ile1964Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5890A>G
  hgvsp: ENSP00000386840.1:p.Ile1964Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5372A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5224A>G
  hgvsp: ENSP00000387255.1:p.Ile1742Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5372A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5372A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile1964Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

2-168103796-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103796
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103796
    reference: chr 2
allele count: 1
allele frequency: 8.421903687109433e-6
allele num: 118738
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5228A>G
  hgvsp: ENSP00000387255.1:p.His1743Arg
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5376A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5894A>G
  hgvsp: ENSP00000295237.9:p.His1965Arg
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5376A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5894A>G
  hgvsp: ENSP00000386840.1:p.His1965Arg
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5376A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5376A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5376A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11029
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7417
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His1965Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP

2-168103798-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103798
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103798
    reference: chr 2
allele count: 2
allele frequency: 1.684692880487887e-5
allele num: 118716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5378C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5896C>T
  hgvsp: ENSP00000295237.9:p.Gln1966Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5378C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5378C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5230C>T
  hgvsp: ENSP00000387255.1:p.Gln1744Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5378C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5896C>T
  hgvsp: ENSP00000386840.1:p.Gln1966Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5378C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9665
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3672
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13529
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln1966Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

2-168103800-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103800
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103800
    reference: chr 2
allele count: 22
allele frequency: 1.852818811164075e-4
allele num: 118738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5380G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5898G>A
  hgvsp: ENST00000295237.9:c.5898G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5380G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5380G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5380G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5898G>A
  hgvsp: ENST00000409195.1:c.5898G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5380G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5232G>A
  hgvsp: ENST00000409273.1:c.5232G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3510
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2945
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7415
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln1966Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP

2-168103807-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103807
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103807
    reference: chr 2
allele count: 1
allele frequency: 8.421761832575375e-6
allele num: 118740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5387G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5905G>A
  hgvsp: ENSP00000386840.1:p.Val1969Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5905G>A
  hgvsp: ENSP00000295237.9:p.Val1969Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5239G>A
  hgvsp: ENSP00000387255.1:p.Val1747Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5387G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5387G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5387G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5387G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3530
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22629
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3690
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val1969Ile
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-168103809-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103809
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103809
    reference: chr 2
allele count: 1
allele frequency: 8.42133629764371e-6
allele num: 118746
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5907C>T
  hgvsp: ENST00000409195.1:c.5907C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5389C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5241C>T
  hgvsp: ENST00000409273.1:c.5241C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5907C>T
  hgvsp: ENST00000295237.9:c.5907C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5389C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5389C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5389C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5389C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22631
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val1969Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

2-168103814-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103814
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103814
    reference: chr 2
allele count: 1
allele frequency: 8.41779184484326e-6
allele num: 118796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5394G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5912G>A
  hgvsp: ENSP00000295237.9:p.Arg1971Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5394G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5394G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5912G>A
  hgvsp: ENSP00000386840.1:p.Arg1971Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5246G>A
  hgvsp: ENSP00000387255.1:p.Arg1749Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5394G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5394G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2951
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg1971Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

2-168103817-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103817
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103817
    reference: chr 2
allele count: 1
allele frequency: 8.416374899003501e-6
allele num: 118816
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5915A>T
  hgvsp: ENSP00000386840.1:p.Asn1972Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5249A>T
  hgvsp: ENSP00000387255.1:p.Asn1750Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5397A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5397A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5397A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5915A>T
  hgvsp: ENSP00000295237.9:p.Asn1972Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5397A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5397A>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asn1972Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

2-168103824-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103824
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103824
    reference: chr 2
allele count: 1
allele frequency: 8.415241685741214e-6
allele num: 118832
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5404T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5922T>C
  hgvsp: ENST00000295237.9:c.5922T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5922T>C
  hgvsp: ENST00000409195.1:c.5922T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5404T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5404T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5256T>C
  hgvsp: ENST00000409273.1:c.5256T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5404T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5404T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3691
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn1974Asn
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

2-168103846-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103846
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103846
    reference: chr 2
allele count: 37
allele frequency: 3.108407823106392e-4
allele num: 119032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5426G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5944G>A
  hgvsp: ENSP00000386840.1:p.Gly1982Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5426G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5278G>A
  hgvsp: ENSP00000387255.1:p.Gly1760Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5944G>A
  hgvsp: ENSP00000295237.9:p.Gly1982Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5426G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5426G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5426G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11177
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9716
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5842
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13584
  bin: 9.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 2971
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly1982Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

2-168103846-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103846
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103846
    reference: chr 2
allele count: 1
allele frequency: 8.401102224611869e-6
allele num: 119032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5278G>T
  hgvsp: ENSP00000387255.1:p.Gly1760Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5944G>T
  hgvsp: ENSP00000386840.1:p.Gly1982Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5944G>T
  hgvsp: ENSP00000295237.9:p.Gly1982Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5426G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5426G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5426G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5426G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5426G>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly1982Cys
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

2-168103847-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103847
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103847
    reference: chr 2
allele count: 2
allele frequency: 1.679656006449879e-5
allele num: 119072
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5427G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5427G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5279G>A
  hgvsp: ENSP00000387255.1:p.Gly1760Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5945G>A
  hgvsp: ENSP00000295237.9:p.Gly1982Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5427G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5427G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5427G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5945G>A
  hgvsp: ENSP00000386840.1:p.Gly1982Asp
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16228
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3713
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22845
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly1982Asp
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/2-168103849-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103849
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103849
    reference: chr 2
allele count: 1
allele frequency: 8.399126490844953e-6
allele num: 119060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5429C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5281C>A
  hgvsp: ENSP00000387255.1:p.Pro1761Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5429C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5947C>A
  hgvsp: ENSP00000386840.1:p.Pro1983Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5429C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5429C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5947C>A
  hgvsp: ENSP00000295237.9:p.Pro1983Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5429C>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7499
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3552
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro1983Thr
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/2-168103859-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103859
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103859
    reference: chr 2
allele count: 1
allele frequency: 8.38940250675347e-6
allele num: 119198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5439C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5291C>A
  hgvsp: ENSP00000387255.1:p.Pro1764Gln
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5957C>A
  hgvsp: ENSP00000386840.1:p.Pro1986Gln
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5439C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5439C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5957C>A
  hgvsp: ENSP00000295237.9:p.Pro1986Gln
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5439C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5439C>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3723
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1689
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3560
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22971
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro1986Gln
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/2-168103860-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103860
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103860
    reference: chr 2
allele count: 1
allele frequency: 8.388558006878617e-6
allele num: 119210
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5958A>C
  hgvsp: ENST00000295237.9:c.5958A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5440A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5440A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5440A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5440A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5292A>C
  hgvsp: ENST00000409273.1:c.5292A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5440A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5958A>C
  hgvsp: ENST00000409195.1:c.5958A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3559
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7529
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2980
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro1986Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

2-168103862-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103862
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103862
    reference: chr 2
allele count: 4
allele frequency: 3.356155188615922e-5
allele num: 119184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5442C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5442C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5442C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5960C>T
  hgvsp: ENSP00000295237.9:p.Ala1987Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5294C>T
  hgvsp: ENSP00000387255.1:p.Ala1765Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5442C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5960C>T
  hgvsp: ENSP00000386840.1:p.Ala1987Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5442C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3725
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala1987Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

2-168103863-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103863
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103863
    reference: chr 2
allele count: 17807
allele frequency: 1.489776454052607e-1
allele num: 119528
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5443G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5961G>A
  hgvsp: ENST00000295237.9:c.5961G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5961G>A
  hgvsp: ENST00000409195.1:c.5961G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5295G>A
  hgvsp: ENST00000409273.1:c.5295G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5443G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5443G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5443G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5443G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 5.25e1
  variant carriers: 1089
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14318
  bin: 2.75e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 4.75e1
  variant carriers: 910
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 9.25e1
  variant carriers: 810
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 5.75e1
  variant carriers: 1197
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 6.75e1
  variant carriers: 1312
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.25e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 277
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.5e0
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 4.25e1
  variant carriers: 634
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 3.75e1
  variant carriers: 399
genotype depth: GenotypeDepth
  all individuals: 10327
  bin: 2.25e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 3.25e1
  variant carriers: 278
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 8.75e1
  variant carriers: 960
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 6.25e1
  variant carriers: 1316
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 8.25e1
  variant carriers: 1127
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 7.25e1
  variant carriers: 1263
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 7.75e1
  variant carriers: 1225
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 9.75e1
  variant carriers: 2875
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 2653
  bin: 7.25e1
  variant carriers: 9
hgvs: p.Ala1987Ala
num of homozygotes: 1543
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

2-168103864-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103864
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103864
    reference: chr 2
allele count: 1
allele frequency: 8.365960579593749e-6
allele num: 119532
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5444G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5444G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5444G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5444G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5962G>C
  hgvsp: ENSP00000386840.1:p.Ala1988Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5444G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5962G>C
  hgvsp: ENSP00000295237.9:p.Ala1988Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5296G>C
  hgvsp: ENSP00000387255.1:p.Ala1766Pro
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala1988Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS

2-168103864-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103864
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103864
    reference: chr 2
allele count: 1
allele frequency: 8.365960579593749e-6
allele num: 119532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5962G>T
  hgvsp: ENSP00000295237.9:p.Ala1988Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5444G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5444G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5444G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5444G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5296G>T
  hgvsp: ENSP00000387255.1:p.Ala1766Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5962G>T
  hgvsp: ENSP00000386840.1:p.Ala1988Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5444G>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18608
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6585
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala1988Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

2-168103871-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103871
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103871
    reference: chr 2
allele count: 2
allele frequency: 1.672017121455324e-5
allele num: 119616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5451G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5303G>T
  hgvsp: ENSP00000387255.1:p.Trp1768Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5451G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5451G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5969G>T
  hgvsp: ENSP00000386840.1:p.Trp1990Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5969G>T
  hgvsp: ENSP00000295237.9:p.Trp1990Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5451G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5451G>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6604
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3057
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp1990Leu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD

2-168103876-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103876
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103876
    reference: chr 2
allele count: 3
allele frequency: 2.50668449197861e-5
allele num: 119680
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5308G>T
  hgvsp: ENSP00000387255.1:p.Gly1770Trp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5456G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5456G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5456G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5974G>T
  hgvsp: ENSP00000295237.9:p.Gly1992Trp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5974G>T
  hgvsp: ENSP00000386840.1:p.Gly1992Trp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5456G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5456G>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18606
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6586
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly1992Trp
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

2-168103880-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103880
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103880
    reference: chr 2
allele count: 2
allele frequency: 1.670341417785795e-5
allele num: 119736
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5460G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5460G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5460G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5460G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5312G>C
  hgvsp: ENSP00000387255.1:p.Gly1771Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5978G>C
  hgvsp: ENSP00000386840.1:p.Gly1993Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5978G>C
  hgvsp: ENSP00000295237.9:p.Gly1993Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5460G>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10823
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2439
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly1993Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

2-168103887-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103887
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103887
    reference: chr 2
allele count: 5
allele frequency: 4.173274351055838e-5
allele num: 119810
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5467T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5467T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5319T>C
  hgvsp: ENST00000409273.1:c.5319T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5467T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5985T>C
  hgvsp: ENST00000409195.1:c.5985T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5985T>C
  hgvsp: ENST00000295237.9:c.5985T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5467T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5467T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2980
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18607
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp1995Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

2-168103892-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103892
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103892
    reference: chr 2
allele count: 1
allele frequency: 8.344598541364175e-6
allele num: 119838
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5324T>C
  hgvsp: ENSP00000387255.1:p.Leu1775Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5472T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5472T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5990T>C
  hgvsp: ENSP00000386840.1:p.Leu1997Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5990T>C
  hgvsp: ENSP00000295237.9:p.Leu1997Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5472T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5472T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5472T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu1997Pro
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

2-168103895-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103895
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103895
    reference: chr 2
allele count: 2
allele frequency: 1.668669069550127e-5
allele num: 119856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5475G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.5993G>C
  hgvsp: ENSP00000386840.1:p.Ser1998Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5475G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5327G>C
  hgvsp: ENSP00000387255.1:p.Ser1776Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5475G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.5993G>C
  hgvsp: ENSP00000295237.9:p.Ser1998Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5475G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5475G>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22101
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser1998Thr
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

2-168103903-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103903
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103903
    reference: chr 2
allele count: 1
allele frequency: 8.340422692622062e-6
allele num: 119898
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5335A>G
  hgvsp: ENSP00000387255.1:p.Met1779Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5483A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6001A>G
  hgvsp: ENSP00000386840.1:p.Met2001Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6001A>G
  hgvsp: ENSP00000295237.9:p.Met2001Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5483A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5483A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5483A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5483A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6612
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met2001Val
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

2-168103916-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103916
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103916
    reference: chr 2
allele count: 1
allele frequency: 8.337502084375522e-6
allele num: 119940
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5496G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5496G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6014G>T
  hgvsp: ENSP00000295237.9:p.Cys2005Phe
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5348G>T
  hgvsp: ENSP00000387255.1:p.Cys1783Phe
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5496G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5496G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6014G>T
  hgvsp: ENSP00000386840.1:p.Cys2005Phe
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5496G>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22109
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6606
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18601
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Cys2005Phe
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP

2-168103916-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103916
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103915
    reference: chr 2
allele count: 1
allele frequency: 8.337502084375522e-6
allele num: 119940
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5350delC
  hgvsp: ENSP00000387255.1:p.His1784MetfsTer4
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5498delC
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5498delC
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5498delC
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5498delC
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6016delC
  hgvsp: ENSP00000386840.1:p.His2006MetfsTer4
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5498delC
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6016delC
  hgvsp: ENSP00000295237.9:p.His2006MetfsTer4
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6606
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His2006MetfsTer4
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: GC
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

2-168103920-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103920
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103920
    reference: chr 2
allele count: 1
allele frequency: 8.33625102119075e-6
allele num: 119958
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5352T>G
  hgvsp: ENSP00000387255.1:p.His1784Gln
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5500T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6018T>G
  hgvsp: ENSP00000386840.1:p.His2006Gln
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5500T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5500T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5500T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5500T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6018T>G
  hgvsp: ENSP00000295237.9:p.His2006Gln
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3049
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His2006Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD

2-168103923-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103923
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103923
    reference: chr 2
allele count: 3
allele frequency: 2.500500100020004e-5
allele num: 119976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5503C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5503C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5503C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5355C>T
  hgvsp: ENST00000409273.1:c.5355C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6021C>T
  hgvsp: ENST00000409195.1:c.6021C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5503C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6021C>T
  hgvsp: ENST00000295237.9:c.6021C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5503C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2978
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3048
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly2007Gly
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

2-168103925-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103925
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103925
    reference: chr 2
allele count: 15125
allele frequency: 1.260689816126827e-1
allele num: 119974
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6023A>G
  hgvsp: ENSP00000295237.9:p.Asn2008Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5505A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6023A>G
  hgvsp: ENSP00000386840.1:p.Asn2008Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5357A>G
  hgvsp: ENSP00000387255.1:p.Asn1786Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5505A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5505A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5505A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5505A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10657
  bin: 2.25e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 15064
  bin: 2.75e1
  variant carriers: 292
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 3.75e1
  variant carriers: 787
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 6.75e1
  variant carriers: 1301
genotype depth: GenotypeDepth
  all individuals: 8187
  bin: 3.25e1
  variant carriers: 501
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.75e1
  variant carriers: 792
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 7.25e1
  variant carriers: 1027
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 6.25e1
  variant carriers: 1382
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 261
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 4.75e1
  variant carriers: 1297
genotype depth: GenotypeDepth
  all individuals: 3914
  bin: 4.25e1
  variant carriers: 1064
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 5.75e1
  variant carriers: 1519
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 5.25e1
  variant carriers: 1435
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 8.25e1
  variant carriers: 559
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 9.75e1
  variant carriers: 1096
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 366
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2081
  bin: 8.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 8.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 2
hgvs: p.Asn2008Ser
num of homozygotes: 1118
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/2-168103934-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103934
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103934
    reference: chr 2
allele count: 2
allele frequency: 1.666500016665e-5
allele num: 120012
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5366A>C
  hgvsp: ENSP00000387255.1:p.Glu1789Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5514A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6032A>C
  hgvsp: ENSP00000295237.9:p.Glu2011Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6032A>C
  hgvsp: ENSP00000386840.1:p.Glu2011Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5514A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5514A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5514A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5514A>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7323
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3321
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu2011Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

2-168103938-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103938
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103938
    reference: chr 2
allele count: 3
allele frequency: 2.499500099980004e-5
allele num: 120024
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6036A>G
  hgvsp: ENST00000409195.1:c.6036A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5370A>G
  hgvsp: ENST00000409273.1:c.5370A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5518A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5518A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6036A>G
  hgvsp: ENST00000295237.9:c.6036A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5518A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5518A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5518A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3479
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3323
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2061
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu2012Glu
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

2-168103939-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103939
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103939
    reference: chr 2
allele count: 1
allele frequency: 8.332083520805212e-6
allele num: 120018
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5519A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5371A>G
  hgvsp: ENSP00000387255.1:p.Arg1791Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5519A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5519A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6037A>G
  hgvsp: ENSP00000386840.1:p.Arg2013Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6037A>G
  hgvsp: ENSP00000295237.9:p.Arg2013Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5519A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5519A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg2013Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum

2-168103942-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103942
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103942
    reference: chr 2
allele count: 17
allele frequency: 1.4161946017994e-4
allele num: 120040
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5522A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6040A>G
  hgvsp: ENSP00000386840.1:p.Thr2014Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5522A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5522A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5522A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6040A>G
  hgvsp: ENSP00000295237.9:p.Thr2014Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5374A>G
  hgvsp: ENSP00000387255.1:p.Thr1792Ala
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5522A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3318
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr2014Ala
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

2-168103943-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103943
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103943
    reference: chr 2
allele count: 9
allele frequency: 7.497251007963746e-5
allele num: 120044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5523C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6041C>T
  hgvsp: ENSP00000386840.1:p.Thr2014Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5523C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6041C>T
  hgvsp: ENSP00000295237.9:p.Thr2014Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5523C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5375C>T
  hgvsp: ENSP00000387255.1:p.Thr1792Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5523C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5523C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9394
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23317
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15225
  bin: 9.75e1
  variant carriers: 9
hgvs: p.Thr2014Ile
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

2-168103948-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103948
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103948
    reference: chr 2
allele count: 1
allele frequency: 8.330834083108401e-6
allele num: 120036
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5380G>T
  hgvsp: ENSP00000387255.1:p.Val1794Phe
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5528G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5528G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6046G>T
  hgvsp: ENSP00000295237.9:p.Val2016Phe
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6046G>T
  hgvsp: ENSP00000386840.1:p.Val2016Phe
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5528G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5528G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5528G>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3483
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2063
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15218
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val2016Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

2-168103950-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103950
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103950
    reference: chr 2
allele count: 782
allele frequency: 6.513735485698103e-3
allele num: 120054
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5530T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5530T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6048T>C
  hgvsp: ENST00000409195.1:c.6048T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5382T>C
  hgvsp: ENST00000409273.1:c.5382T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5530T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5530T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6048T>C
  hgvsp: ENST00000295237.9:c.6048T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5530T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 6.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 6.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 9315
  bin: 3.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 16348
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 3.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 5.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 4.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 11012
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 5.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 4.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 9.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3275
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val2016Val
num of homozygotes: 5
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-168103958-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103958
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103958
    reference: chr 2
allele count: 1
allele frequency: 8.33152816889674e-6
allele num: 120026
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5538C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5390C>G
  hgvsp: ENSP00000387255.1:p.Pro1797Arg
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5538C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5538C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5538C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6056C>G
  hgvsp: ENSP00000295237.9:p.Pro2019Arg
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6056C>G
  hgvsp: ENSP00000386840.1:p.Pro2019Arg
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5538C>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7233
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15257
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3322
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro2019Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

2-168103971-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103971
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103971
    reference: chr 2
allele count: 1
allele frequency: 8.327226700419692e-6
allele num: 120088
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5403A>G
  hgvsp: ENST00000409273.1:c.5403A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5551A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6069A>G
  hgvsp: ENST00000295237.9:c.6069A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5551A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6069A>G
  hgvsp: ENST00000409195.1:c.6069A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5551A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5551A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5551A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16622
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3489
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys2023Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

2-168103975-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103975
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103975
    reference: chr 2
allele count: 1
allele frequency: 8.326256015719971e-6
allele num: 120102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5407A>T
  hgvsp: ENSP00000387255.1:p.Thr1803Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5555A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5555A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5555A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6073A>T
  hgvsp: ENSP00000386840.1:p.Thr2025Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5555A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6073A>T
  hgvsp: ENSP00000295237.9:p.Thr2025Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5555A>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3329
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15254
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr2025Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

2-168103984-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103984
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103984
    reference: chr 2
allele count: 2
allele frequency: 1.664835347784104e-5
allele num: 120132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5564A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6082A>T
  hgvsp: ENSP00000295237.9:p.Ile2028Phe
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5564A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5564A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5564A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6082A>T
  hgvsp: ENSP00000386840.1:p.Ile2028Phe
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5416A>T
  hgvsp: ENSP00000387255.1:p.Ile1806Phe
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5564A>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9386
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3486
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3321
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile2028Phe
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: A
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS

2-168103985-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103985
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103985
    reference: chr 2
allele count: 4
allele frequency: 3.329116452493508e-5
allele num: 120152
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6083T>C
  hgvsp: ENSP00000386840.1:p.Ile2028Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5565T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5565T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5417T>C
  hgvsp: ENSP00000387255.1:p.Ile1806Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6083T>C
  hgvsp: ENSP00000295237.9:p.Ile2028Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5565T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5565T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5565T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9388
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2796
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile2028Thr
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP

2-168103989-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103989
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103989
    reference: chr 2
allele count: 2
allele frequency: 1.664502813009754e-5
allele num: 120156
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6087C>T
  hgvsp: ENST00000409195.1:c.6087C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5421C>T
  hgvsp: ENST00000409273.1:c.5421C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6087C>T
  hgvsp: ENST00000295237.9:c.6087C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5569C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5569C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5569C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5569C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5569C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23730
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val2029Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

2-168103990-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103990
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103990
    reference: chr 2
allele count: 7
allele frequency: 5.825565912117177e-5
allele num: 120160
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5570A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6088A>G
  hgvsp: ENSP00000295237.9:p.Ile2030Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5570A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5570A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5570A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5422A>G
  hgvsp: ENSP00000387255.1:p.Ile1808Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6088A>G
  hgvsp: ENSP00000386840.1:p.Ile2030Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5570A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile2030Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

2-168103995-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103995
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103995
    reference: chr 2
allele count: 2
allele frequency: 1.664391997603276e-5
allele num: 120164
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6093T>C
  hgvsp: ENST00000409195.1:c.6093T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5575T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5427T>C
  hgvsp: ENST00000409273.1:c.5427T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5575T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5575T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6093T>C
  hgvsp: ENST00000295237.9:c.6093T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5575T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5575T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23754
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3484
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7261
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp2031Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/2-168103996-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103996
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103996
    reference: chr 2
allele count: 1
allele frequency: 8.322929671244279e-6
allele num: 120150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5576C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5428C>A
  hgvsp: ENSP00000387255.1:p.Arg1810Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6094C>A
  hgvsp: ENSP00000386840.1:p.Arg2032Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5576C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5576C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5576C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6094C>A
  hgvsp: ENSP00000295237.9:p.Arg2032Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5576C>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg2032Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

2-168103996-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103996
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103996
    reference: chr 2
allele count: 5
allele frequency: 4.161464835622139e-5
allele num: 120150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5428C>T
  hgvsp: ENSP00000387255.1:p.Arg1810Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5576C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5576C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6094C>T
  hgvsp: ENSP00000386840.1:p.Arg2032Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5576C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6094C>T
  hgvsp: ENSP00000295237.9:p.Arg2032Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5576C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5576C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5729
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3484
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23739
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7251
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg2032Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

2-168103997-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103997
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103997
    reference: chr 2
allele count: 51
allele frequency: 4.244058318354304e-4
allele num: 120168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5577G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5577G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5577G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6095G>A
  hgvsp: ENSP00000386840.1:p.Arg2032His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6095G>A
  hgvsp: ENSP00000295237.9:p.Arg2032His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5577G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5429G>A
  hgvsp: ENSP00000387255.1:p.Arg1810His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5577G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16659
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 9375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3316
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg2032His
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

2-168103997-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168103997
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168103997
    reference: chr 2
allele count: 1
allele frequency: 8.321682977165302e-6
allele num: 120168
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6095G>C
  hgvsp: ENSP00000386840.1:p.Arg2032Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5577G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5429G>C
  hgvsp: ENSP00000387255.1:p.Arg1810Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5577G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6095G>C
  hgvsp: ENSP00000295237.9:p.Arg2032Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5577G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5577G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5577G>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7252
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3316
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg2032Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

2-168104002-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168104002
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168104002
    reference: chr 2
allele count: 1
allele frequency: 8.321129010784183e-6
allele num: 120176
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5582C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5582C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5582C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6100C>G
  hgvsp: ENSP00000295237.9:p.Gln2034Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5582C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5434C>G
  hgvsp: ENSP00000387255.1:p.Gln1812Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6100C>G
  hgvsp: ENSP00000386840.1:p.Gln2034Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5582C>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23786
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln2034Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-168104004-A-AAAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168104004
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168104007
    reference: chr 2
allele count: 1
allele frequency: 8.320852055250457e-6
allele num: 120180
alternate allele: AAAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5587_1275+5589dupCAA
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6105_6107dupCAA
  hgvsp: ENSP00000295237.9:p.Asn2036dup
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5587_1176+5589dupCAA
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5587_1176+5589dupCAA
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5587_1275+5589dupCAA
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5439_5441dupCAA
  hgvsp: ENSP00000387255.1:p.Asn1814dup
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5587_510+5589dupCAA
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6105_6107dupCAA
  hgvsp: ENSP00000386840.1:p.Asn2036dup
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23781
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn2036dup
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

2-168104020-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168104020
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168104020
    reference: chr 2
allele count: 1
allele frequency: 8.322237017310253e-6
allele num: 120160
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5600G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5452G>A
  hgvsp: ENSP00000387255.1:p.Glu1818Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6118G>A
  hgvsp: ENSP00000386840.1:p.Glu2040Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5600G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6118G>A
  hgvsp: ENSP00000295237.9:p.Glu2040Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5600G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5600G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5600G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3483
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu2040Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

2-168104027-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168104027
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168104027
    reference: chr 2
allele count: 1
allele frequency: 8.324038157390913e-6
allele num: 120134
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5459G>T
  hgvsp: ENSP00000387255.1:p.Ser1820Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6125G>T
  hgvsp: ENSP00000295237.9:p.Ser2042Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6125G>T
  hgvsp: ENSP00000386840.1:p.Ser2042Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5607G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5607G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5607G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5607G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5607G>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23591
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser2042Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-168104033-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168104033
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168104032
    reference: chr 2
allele count: 2
allele frequency: 1.664863065012903e-5
allele num: 120130
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6133delA
  hgvsp: ENSP00000386840.1:p.Arg2045AspfsTer35
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5615delA
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5615delA
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6133delA
  hgvsp: ENSP00000295237.9:p.Arg2045AspfsTer35
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5467delA
  hgvsp: ENSP00000387255.1:p.Arg1823AspfsTer35
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5615delA
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5615delA
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5615delA
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15234
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg2045AspfsTer35
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: GA
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

2-168104035-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168104035
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168104035
    reference: chr 2
allele count: 5
allele frequency: 4.162504162504163e-5
allele num: 120120
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6133A>G
  hgvsp: ENSP00000386840.1:p.Arg2045Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6133A>G
  hgvsp: ENSP00000295237.9:p.Arg2045Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5615A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5467A>G
  hgvsp: ENSP00000387255.1:p.Arg1823Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5615A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5615A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5615A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5615A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7200
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3312
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg2045Gly
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

2-168104036-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168104036
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168104036
    reference: chr 2
allele count: 2
allele frequency: 1.66497394315779e-5
allele num: 120122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5616G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6134G>T
  hgvsp: ENSP00000295237.9:p.Arg2045Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5616G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5616G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5616G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6134G>T
  hgvsp: ENSP00000386840.1:p.Arg2045Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5468G>T
  hgvsp: ENSP00000387255.1:p.Arg1823Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5616G>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16581
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7197
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg2045Ile
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

2-168104037-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168104037
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168104037
    reference: chr 2
allele count: 1
allele frequency: 8.324315325064513e-6
allele num: 120130
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6135A>T
  hgvsp: ENSP00000295237.9:p.Arg2045Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5617A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5617A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6135A>T
  hgvsp: ENSP00000386840.1:p.Arg2045Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5617A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5617A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5469A>T
  hgvsp: ENSP00000387255.1:p.Arg1823Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5617A>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg2045Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/2-168104038-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168104038
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168104038
    reference: chr 2
allele count: 4
allele frequency: 3.33000333000333e-5
allele num: 120120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5618C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5618C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6136C>A
  hgvsp: ENSP00000386840.1:p.Leu2046Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5618C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6136C>A
  hgvsp: ENSP00000295237.9:p.Leu2046Ile
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5618C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5618C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5470C>A
  hgvsp: ENSP00000387255.1:p.Leu1824Ile
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7200
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23419
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu2046Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS

2-168104039-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168104039
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168104039
    reference: chr 2
allele count: 1
allele frequency: 8.324869715788949e-6
allele num: 120122
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5471T>C
  hgvsp: ENSP00000387255.1:p.Leu1824Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.6137T>C
  hgvsp: ENSP00000295237.9:p.Leu2046Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.1275+5619T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.1176+5619T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.1275+5619T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.6137T>C
  hgvsp: ENSP00000386840.1:p.Leu2046Pro
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.1176+5619T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.510+5619T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu2046Pro
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 251
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23127
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7391
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13514
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2930
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3505
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.091617933723197e-5
allele num: 16416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.096458e6

VQSLOD
type: SiteQuality
SIO_000300: 4.32e-1

FS
type: SiteQuality
SIO_000300: 8.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.205e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.16e-1

GenotypeQuality
all individuals: 265
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13512
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3503
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1656
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3675
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7385
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2929
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9462
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.828376401755241e-4
allele num: 16408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65448
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.66e1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

FS
type: SiteQuality
SIO_000300: 4.271e0

VQSLOD
type: SiteQuality
SIO_000300: 2.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.92e-1

DP
type: SiteQuality
SIO_000300: 2.096615e6

GenotypeQuality
all individuals: 258
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7388
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1658
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3683
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3499
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13517
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.518833535844471e-4
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528304193666707e-5
allele num: 65432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.804e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.92e0

DP
type: SiteQuality
SIO_000300: 2.095532e6

FS
type: SiteQuality
SIO_000300: 1.843e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

QD
type: SiteQuality
SIO_000300: 1.362e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1174
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3672
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2922
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13519
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 293
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.633426966292135e-4
allele num: 11392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529098749197223e-5
allele num: 65398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.167e1

FS
type: SiteQuality
SIO_000300: 1.196e0

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

DP
type: SiteQuality
SIO_000300: 2.095823e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.52e0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2929
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3487
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13522
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 266
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7357
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3667
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22701
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.058201058201058e-4
allele num: 9450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529051987767584e-5
allele num: 65400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.18e0

QD
type: SiteQuality
SIO_000300: 2.81e1

DP
type: SiteQuality
SIO_000300: 2.096074e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.746e0

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.797e0

MQ
type: SiteQuality
SIO_000300: 5.921e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.12e-1

GenotypeQuality
all individuals: 13521
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3508
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3673
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9444
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172607879924953e-4
allele num: 8528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65458
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e-1

QD
type: SiteQuality
SIO_000300: 1.332e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

FS
type: SiteQuality
SIO_000300: 2.549e0

VQSLOD
type: SiteQuality
SIO_000300: 7.32e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.85e-1

DP
type: SiteQuality
SIO_000300: 2.095225e6

GenotypeQuality
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7403
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13522
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 264
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3664
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22936
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3509
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.054740957966764e-5
allele num: 65472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.009e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

DP
type: SiteQuality
SIO_000300: 2.095869e6

MQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.853e-1

FS
type: SiteQuality
SIO_000300: 7.612e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22939
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13523
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7413
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3662
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3515
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1660
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172332942555686e-4
allele num: 8530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.66e-1

FS
type: SiteQuality
SIO_000300: 4.887e0

DP
type: SiteQuality
SIO_000300: 2.095799e6

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.109e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.426e1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

GenotypeQuality
all individuals: 261
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2940
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7418
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22960
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13523
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.058649163667161e-4
allele num: 9446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65464
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.095787e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: -2.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 9.23e-1

QD
type: SiteQuality
SIO_000300: 1.316e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e0

GenotypeQuality
all individuals: 2133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3516
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2937
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7421
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1660
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22842
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527930570834861e-5
allele num: 65448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.6043e1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-1

QD
type: SiteQuality
SIO_000300: 1.349e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.05e-1

DP
type: SiteQuality
SIO_000300: 2.095666e6

VQSLOD
type: SiteQuality
SIO_000300: -2.033e0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13524
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.055861141669723e-5
allele num: 65448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.94e-1

DP
type: SiteQuality
SIO_000300: 2.096011e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

QD
type: SiteQuality
SIO_000300: 1.154e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: -6.63e-2

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3671
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 280
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variant carriers: 0

GenotypeQuality
all individuals: 204
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variant carriers: 0

GenotypeQuality
all individuals: 7414
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variant carriers: 0

GenotypeQuality
all individuals: 1271
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variant carriers: 0

GenotypeQuality
all individuals: 2940
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65466
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.133786848072562e-3
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 6.408e0

QD
type: SiteQuality
SIO_000300: 1.367e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e-1

DP
type: SiteQuality
SIO_000300: 2.095487e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.07e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

VQSLOD
type: SiteQuality
SIO_000300: 9.15e-1

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13526
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 215
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variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3525
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1665
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.171783454417624e-4
allele num: 8534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9460
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQ
type: SiteQuality
SIO_000300: 5.741e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: -2.101e0

FS
type: SiteQuality
SIO_000300: 1.897e0

QD
type: SiteQuality
SIO_000300: 2.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.11e-1

DP
type: SiteQuality
SIO_000300: 2.095143e6

GenotypeQuality
all individuals: 2135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2941
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1665
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3515
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7410
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9452
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.217730150998539e-4
allele num: 16424
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.954e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

FS
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.79e-1

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.59e-1

DP
type: SiteQuality
SIO_000300: 2.09531e6

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13542
bin: 9.75e1
variant carriers: 22

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3681
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Latino
type: Population
allele count: 22
allele frequency: 1.930501930501931e-3
allele num: 11396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.097e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-2

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 5.25e-1

QD
type: SiteQuality
SIO_000300: 1.42e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-2

DP
type: SiteQuality
SIO_000300: 2.096137e6

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7430
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
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GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
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GenotypeQuality
all individuals: 2138
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1296
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13540
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527370478983382e-5
allele num: 65472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9452
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.575e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.235e1

DP
type: SiteQuality
SIO_000300: 2.095738e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2138
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13541
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3529
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7432
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3694
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527043948324833e-5
allele num: 65486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.522e1

DP
type: SiteQuality
SIO_000300: 2.095571e6

VQSLOD
type: SiteQuality
SIO_000300: 7.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.061e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 2.688e0

MQRankSum
type: SiteQuality
SIO_000300: 5.06e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.977e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3532
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2138
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526531110704036e-5
allele num: 65508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.524e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 2.701e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

VQSLOD
type: SiteQuality
SIO_000300: -6.782e-1

DP
type: SiteQuality
SIO_000300: 2.096121e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

QD
type: SiteQuality
SIO_000300: 1.053e1

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2954
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.058649163667161e-4
allele num: 9446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.19e0

VQSLOD
type: SiteQuality
SIO_000300: 5.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.089e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.183e1

DP
type: SiteQuality
SIO_000300: 2.096093e6

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13549
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2957
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525739220652406e-5
allele num: 65542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.437e0

QD
type: SiteQuality
SIO_000300: 1.714e1

VQSLOD
type: SiteQuality
SIO_000300: -7.55e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQRankSum
type: SiteQuality
SIO_000300: 6.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

DP
type: SiteQuality
SIO_000300: 2.096077e6

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7489
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22855
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65622
num of homozygotes: 0

African
type: Population
allele count: 35
allele frequency: 3.694321300401098e-3
allele num: 9474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.745810055865922e-4
allele num: 11456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.234e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.905e0

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.100809e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.42e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166044776119403e-4
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65622
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

DP
type: SiteQuality
SIO_000300: 2.100809e6

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.234e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.905e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1140
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.108370229812355e-4
allele num: 9486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.970000000000001e0

DP
type: SiteQuality
SIO_000300: 2.100956e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523368472366096e-5
allele num: 65644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
SIO_000300: 5.313e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 6.9e0

VQSLOD
type: SiteQuality
SIO_000300: -7.502e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.305e0

DP
type: SiteQuality
SIO_000300: 2.101178e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521699433927811e-5
allele num: 65716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.145e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.869999999999999e0

DP
type: SiteQuality
SIO_000300: 2.103408e6

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1690
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GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 42
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.718395815170009e-5
allele num: 11470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

QD
type: SiteQuality
SIO_000300: 1.36e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

FS
type: SiteQuality
SIO_000300: 2.609e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.409999999999999e-2

DP
type: SiteQuality
SIO_000300: 2.103562e6

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3557
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7525
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2981
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13593
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22940
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214919207872676e-4
allele num: 16462
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165229550221394e-4
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521931026085898e-5
allele num: 65706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.663e0

QD
type: SiteQuality
SIO_000300: 1.05e1

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e-1

FS
type: SiteQuality
SIO_000300: 4.33e-1

DP
type: SiteQuality
SIO_000300: 2.104245e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 20610
bin: 6.25e1
variant carriers: 16

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2594
bin: 7.75e1
variant carriers: 13

GenotypeQuality
all individuals: 6079
bin: 6.75e1
variant carriers: 19

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 12

GenotypeQuality
all individuals: 57
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1929
bin: 8.25e1
variant carriers: 16

GenotypeQuality
all individuals: 1045
bin: 8.75e1
variant carriers: 23

GenotypeQuality
all individuals: 179
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1289
bin: 9.25e1
variant carriers: 31

GenotypeQuality
all individuals: 22574
bin: 9.75e1
variant carriers: 16103

South Asian
type: Population
allele count: 3482
allele frequency: 2.113633604467646e-1
allele num: 16474
num of homozygotes: 383

Latino
type: Population
allele count: 1472
allele frequency: 1.282006619055914e-1
allele num: 11482
num of homozygotes: 101

Other
type: Population
allele count: 122
allele frequency: 1.361607142857143e-1
allele num: 896
num of homozygotes: 7

East Asian
type: Population
allele count: 1077
allele frequency: 1.253491620111732e-1
allele num: 8592
num of homozygotes: 74

African
type: Population
allele count: 3030
allele frequency: 3.14250155569384e-1
allele num: 9642
num of homozygotes: 481

European (Finnish)
type: Population
allele count: 979
allele frequency: 1.489199878308488e-1
allele num: 6574
num of homozygotes: 69

European (Non-Finnish)
type: Population
allele count: 7645
allele frequency: 1.16065464261857e-1
allele num: 65868
num of homozygotes: 428

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 1.478e1

VQSLOD
type: SiteQuality
SIO_000300: 6.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.86e-2

DP
type: SiteQuality
SIO_000300: 2.608399e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6585
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1833
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2973
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18608
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21427
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518187890933382e-5
allele num: 65868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

DP
type: SiteQuality
SIO_000300: 2.340763e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.138e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.57e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.554e0

FS
type: SiteQuality
SIO_000300: 1.108e0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1833
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.709284096847239e-5
allele num: 11482
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.340763e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 1.108e0

QD
type: SiteQuality
SIO_000300: 1.138e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.554e0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21640
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18605
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 208
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2975
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1834
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.741553465691397e-4
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65926
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.054e0

MQRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.46e-1

DP
type: SiteQuality
SIO_000300: 2.342181e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.659e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.67e-1

QD
type: SiteQuality
SIO_000300: 1.053e1

GenotypeQuality
all individuals: 242
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3054
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1834
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21816
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.031405359524676e-5
allele num: 65976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.6e-2

FS
type: SiteQuality
SIO_000300: 2.625e0

DP
type: SiteQuality
SIO_000300: 2.343745e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.713e0

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.25e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 9.320000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

QD
type: SiteQuality
SIO_000300: 1.02e1

GenotypeQuality
all individuals: 183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6606
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 2976
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3056
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18603
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 21959
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.029752166272799e-5
allele num: 66012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.82e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-1

FS
type: SiteQuality
SIO_000300: 9.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

QD
type: SiteQuality
SIO_000300: 1.918e1

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 2.345007e6

GenotypeQuality
all individuals: 1395
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1833
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6619
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22088
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3050
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513592056668887e-5
allele num: 66068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.703220191470844e-5
allele num: 11490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.819946614899296e-4
allele num: 16484
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

FS
type: SiteQuality
SIO_000300: 1.108e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

QD
type: SiteQuality
SIO_000300: 1.395e1

DP
type: SiteQuality
SIO_000300: 2.346655e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
all individuals: 2982
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1831
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18602
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22081
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3049
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6618
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513500423780119e-5
allele num: 66072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.62e0

FS
type: SiteQuality
SIO_000300: 4.179e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.212e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

DP
type: SiteQuality
SIO_000300: 2.347009e6

MQRankSum
type: SiteQuality
SIO_000300: 9.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2978
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1830
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18601
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6615
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2444
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3047
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.026268006294638e-5
allele num: 66088
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

MQ
type: SiteQuality
SIO_000300: 5.987e1

QD
type: SiteQuality
SIO_000300: 1.527e1

FS
type: SiteQuality
SIO_000300: 3.385e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

DP
type: SiteQuality
SIO_000300: 2.347586e6

GenotypeQuality
all individuals: 3052
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2976
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1830
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22188
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18601
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512264464809606e-5
allele num: 66126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.887e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

QD
type: SiteQuality
SIO_000300: 1.384e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e0

DP
type: SiteQuality
SIO_000300: 2.348046e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.37e-1

FS
type: SiteQuality
SIO_000300: 1.827e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

VQSLOD
type: SiteQuality
SIO_000300: -6.735e-1

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3049
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2974
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511304558094547e-5
allele num: 66168
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.86e-1

MQ
type: SiteQuality
SIO_000300: 6.019e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.86e-1

QD
type: SiteQuality
SIO_000300: 1.29e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: 7.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 1.1107e1

DP
type: SiteQuality
SIO_000300: 2.348802e6

GenotypeQuality
all individuals: 510
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18601
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3049
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2974
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22109
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511304558094547e-5
allele num: 66168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.019e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.86e-1

FS
type: SiteQuality
SIO_000300: 1.1107e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: 7.82e-1

DP
type: SiteQuality
SIO_000300: 2.348802e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.86e-1

QD
type: SiteQuality
SIO_000300: 1.29e1

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2444
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6605
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18605
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 163
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2981
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511121856866538e-5
allele num: 66176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.7e-1

QD
type: SiteQuality
SIO_000300: 1.531e1

MQRankSum
type: SiteQuality
SIO_000300: 9.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 3.066e0

DP
type: SiteQuality
SIO_000300: 2.349163e6

VQSLOD
type: SiteQuality
SIO_000300: 6.29e-1

GenotypeQuality
all individuals: 2438
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6598
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18604
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 22082
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.532269760696157e-5
allele num: 66192
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.34945e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.26e-1

FS
type: SiteQuality
SIO_000300: 5.081e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.784e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.78e-1

QD
type: SiteQuality
SIO_000300: 1.243e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1406
bin: 9.25e1
variant carriers: 27

GenotypeQuality
all individuals: 131
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 7

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 6355
bin: 6.75e1
variant carriers: 6

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2737
bin: 7.75e1
variant carriers: 15

GenotypeQuality
all individuals: 21495
bin: 6.25e1
variant carriers: 13

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 7

GenotypeQuality
all individuals: 21162
bin: 9.75e1
variant carriers: 13891

GenotypeQuality
all individuals: 2789
bin: 7.25e1
variant carriers: 7

Other
type: Population
allele count: 94
allele frequency: 1.046770601336303e-1
allele num: 898
num of homozygotes: 4

South Asian
type: Population
allele count: 2430
allele frequency: 1.473620375985446e-1
allele num: 16490
num of homozygotes: 193

Latino
type: Population
allele count: 1323
allele frequency: 1.152639832723471e-1
allele num: 11478
num of homozygotes: 81

European (Finnish)
type: Population
allele count: 947
allele frequency: 1.438335358444714e-1
allele num: 6584
num of homozygotes: 66

European (Non-Finnish)
type: Population
allele count: 6513
allele frequency: 9.838963079340142e-2
allele num: 66196
num of homozygotes: 300

East Asian
type: Population
allele count: 1074
allele frequency: 1.250582207731719e-1
allele num: 8588
num of homozygotes: 72

African
type: Population
allele count: 2744
allele frequency: 2.817248459958932e-1
allele num: 9740
num of homozygotes: 402

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.58e-2

QD
type: SiteQuality
SIO_000300: 1.659e1

VQSLOD
type: SiteQuality
SIO_000300: 4.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

FS
type: SiteQuality
SIO_000300: 1.109e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e0

DP
type: SiteQuality
SIO_000300: 2.400439e6

GenotypeQuality
all individuals: 149
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15226
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 127
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1572
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23217
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2821
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3479
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019961948479449e-5
allele num: 66226
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.635e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

QD
type: SiteQuality
SIO_000300: 1.473e1

VQSLOD
type: SiteQuality
SIO_000300: 2.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.18411e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
all individuals: 7315
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1571
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2817
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23256
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15226
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66246
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.818402230573403e-4
allele num: 16498
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.23e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.06e1

MQRankSum
type: SiteQuality
SIO_000300: 4.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.826e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

FS
type: SiteQuality
SIO_000300: 3.255e0

DP
type: SiteQuality
SIO_000300: 2.184151e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66238
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e-2

DP
type: SiteQuality
SIO_000300: 2.184142e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 1.577e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 17

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66246
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

South Asian
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allele count: 17
allele frequency: 1.030427930658262e-3
allele num: 16498
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.519e1

DP
type: SiteQuality
SIO_000300: 2.184589e6

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.26e0

VQSLOD
type: SiteQuality
SIO_000300: 2.67e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.050861361771944e-4
allele num: 9752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.556500607533414e-4
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.527891813571601e-5
allele num: 66256
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164144353899884e-4
allele num: 8590
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

DP
type: SiteQuality
SIO_000300: 2.184664e6

FS
type: SiteQuality
SIO_000300: 4.048e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.158e0

MQRankSum
type: SiteQuality
SIO_000300: 6.32e-1

QD
type: SiteQuality
SIO_000300: 1.379e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.73e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509433962264151e-5
allele num: 66250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.184584e6

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

MQRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.541e0

QD
type: SiteQuality
SIO_000300: 1.073e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.88e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164415463437354e-4
allele num: 8588
num of homozygotes: 0

Latino
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allele count: 21
allele frequency: 1.832140987611237e-3
allele num: 11462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 639
allele frequency: 9.641790143947853e-3
allele num: 66274
num of homozygotes: 3

European (Finnish)
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allele count: 23
allele frequency: 3.492256301245065e-3
allele num: 6586
num of homozygotes: 0

South Asian
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allele count: 81
allele frequency: 4.909686022548188e-3
allele num: 16498
num of homozygotes: 2

African
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allele count: 11
allele frequency: 1.128205128205128e-3
allele num: 9750
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 6.696428571428571e-3
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.97e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

FS
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66266
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.85e-1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
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InbreedingCoeff
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SIO_000300: 0.0e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

QD
type: SiteQuality
SIO_000300: 3.097e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele num: 8580
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Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.508113651444773e-5
allele num: 66308
num of homozygotes: 0

DP
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -8.75e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.507840772014475e-5
allele num: 66320
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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VQSLOD
type: SiteQuality
SIO_000300: -7.123e-1

ReadPosRankSum
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BaseQRankSum
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FS
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DP
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QD
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.906e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 81
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2796
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506977304921788e-5
allele num: 66358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023960679909891e-4
allele num: 9766
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.188746e6

MQ
type: SiteQuality
SIO_000300: 5.903e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

VQSLOD
type: SiteQuality
SIO_000300: -3.929e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

QD
type: SiteQuality
SIO_000300: 1.257e1

FS
type: SiteQuality
SIO_000300: 5.088e0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2078
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1591
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7265
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15253
bin: 9.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.42512428761974e-4
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66370
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQRankSum
type: SiteQuality
SIO_000300: 4.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e0

FS
type: SiteQuality
SIO_000300: 3.718e0

QD
type: SiteQuality
SIO_000300: 1.619e1

DP
type: SiteQuality
SIO_000300: 2.188923e6

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15251
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 2
allele frequency: 2.332633543270352e-4
allele num: 8574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.189088e6

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.319e0

QD
type: SiteQuality
SIO_000300: 8.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.61e-1

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7260
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
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variant carriers: 0

GenotypeQuality
all individuals: 3324
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 23720
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15255
bin: 9.75e1
variant carriers: 7

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.162313432835821e-4
allele num: 8576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

FS
type: SiteQuality
SIO_000300: 1.096e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 2.189e6

QD
type: SiteQuality
SIO_000300: 1.307e1

GenotypeQuality
all individuals: 2796
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3323
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1592
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15251
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212709192335678e-4
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.007e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

DP
type: SiteQuality
SIO_000300: 2.188983e6

VQSLOD
type: SiteQuality
SIO_000300: 1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

FS
type: SiteQuality
SIO_000300: 1.415e0

MQ
type: SiteQuality
SIO_000300: 5.909e1

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1591
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3318
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23739
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3484
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7251
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15253
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023960679909891e-4
allele num: 9766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.125e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.046e0

DP
type: SiteQuality
SIO_000300: 2.189235e6

QD
type: SiteQuality
SIO_000300: 1.003e1

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15253
bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1591
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.500583430571762e-4
allele num: 8570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506296318611797e-5
allele num: 66388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.189235e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.046e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

FS
type: SiteQuality
SIO_000300: 1.125e0

VQSLOD
type: SiteQuality
SIO_000300: 8.75e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 1.003e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 23767
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15274
bin: 9.75e1
variant carriers: 50

GenotypeQuality
all individuals: 3478
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.409638554216867e-4
allele num: 66400
num of homozygotes: 1

Latino
type: Population
allele count: 1
allele frequency: 8.727526618956188e-5
allele num: 11458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 31
allele frequency: 1.879927228623408e-3
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.498950314905528e-4
allele num: 8574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.77e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.171e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.190599e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.95e0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
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variant carriers: 0

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 2075
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variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1589
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15274
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23767
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66400
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.77e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.171e1

VQSLOD
type: SiteQuality
SIO_000300: 3.95e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.190599e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

GenotypeQuality
all individuals: 2792
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3326
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66410
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.024380249948781e-4
allele num: 9762
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.828e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-1

InbreedingCoeff
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VQSLOD
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DP
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FS
type: SiteQuality
SIO_000300: 1.281e0

BaseQRankSum
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SIO_000300: 8.799999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

ReadPosRankSum
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SIO_000300: 1.76e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66414
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 1
allele frequency: 1.166316771635176e-4
allele num: 8574
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ReadPosRankSum
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QD
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MQ
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FS
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MQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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SIO_000300: 3.6e-3

BaseQRankSum
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SIO_000300: 6.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.01e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 1.024800163968026e-4
allele num: 9758
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66412
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -5.18e-1

BaseQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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QD
type: SiteQuality
SIO_000300: 1.573e1

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8562
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506114826194349e-5
allele num: 66396
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
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QD
type: SiteQuality
SIO_000300: 1.477e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.457e0

FS
type: SiteQuality
SIO_000300: 7.41e-1

VQSLOD
type: SiteQuality
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DP
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SIO_000300: 2.186894e6

MQ
type: SiteQuality
SIO_000300: 5.885e1

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.168224299065421e-4
allele num: 8560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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BaseQRankSum
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MQRankSum
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QD
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MQ
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ClippingRankSum
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SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.842486562280906e-4
allele num: 8558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9752
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66400
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.424e1

VQSLOD
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.72e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.336448598130841e-4
allele num: 8560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
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African
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66402
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MQRankSum
type: SiteQuality
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DP
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ReadPosRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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allele frequency: 1.516990291262136e-4
allele num: 6592
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African
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Latino
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South Asian
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European (Non-Finnish)
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allele num: 66402
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Other
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DP
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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FS
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 4.672897196261682e-4
allele num: 8560
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Latino
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South Asian
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MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
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QD
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VQSLOD
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BaseQRankSum
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DP
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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