3-158523279-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158523279
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158523279
    reference: chr 3
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.296+16A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.476+16A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.281+16A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.216+1119A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.359+1119A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*113+16A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.216+1119A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.254+16A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.329+16A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*100+16A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.248+16A>T
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

3-158523287-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158523287
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158523287
    reference: chr 3
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.248+24G>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.216+1127G>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.296+24G>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.359+1127G>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.329+24G>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.281+24G>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*113+24G>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.476+24G>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.254+24G>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.216+1127G>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*100+24G>T
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

3-158523299-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158523299
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158523299
    reference: chr 3
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.296+36T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.476+36T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.329+36T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.248+36T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*113+36T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.281+36T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.254+36T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.216+1139T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.216+1139T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*100+36T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.359+1139T>C
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

3-158523300-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158523300
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158523300
    reference: chr 3
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.216+1140G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.216+1140G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.329+37G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.281+37G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*100+37G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.476+37G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*113+37G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.359+1140G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.254+37G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.296+37G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.248+37G>C
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8429
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10610
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/3-158523301-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158523301
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158523301
    reference: chr 3
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.254+38A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.248+38A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.476+38A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.216+1141A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.296+38A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.216+1141A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*100+38A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.281+38A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.359+1141A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.329+38A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*113+38A>C
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

3-158523308-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158523308
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158523309
    reference: chr 3
allele count: 11
allele frequency: 9.073362258112411e-5
allele num: 121234
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.248+50dupA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*113+50dupA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.359+1153dupA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.296+50dupA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.254+50dupA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.281+50dupA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.216+1153dupA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.329+50dupA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.216+1153dupA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.476+50dupA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*100+50dupA
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10210
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10707
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

3-158524779-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524779
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524779
    reference: chr 3
allele count: 1
allele frequency: 1.059434262104037e-5
allele num: 94390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.255-50T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.477-50T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.217-50T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.217-50T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.297-50T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*114-50T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.282-50T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.330-50T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.360-50T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*101-50T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.249-50T>C
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13885
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5786
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum

3-158524782-TTTTTTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524782
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524776
    reference: chr 3
allele count: 1
allele frequency: 9.353836943914394e-6
allele num: 106908
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*114-33_*114-28delTTTTCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.282-33_282-28delTTTTCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.330-33_330-28delTTTTCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*101-33_*101-28delTTTTCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.217-33_217-28delTTTTCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.249-33_249-28delTTTTCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.477-33_477-28delTTTTCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.255-33_255-28delTTTTCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.360-33_360-28delTTTTCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.297-33_297-28delTTTTCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.217-33_217-28delTTTTCT
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: TTTTTTC
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

3-158524788-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524788
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524788
    reference: chr 3
allele count: 10
allele frequency: 9.566082497895462e-5
allele num: 104536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*114-41C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.255-41C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.282-41C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.297-41C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*101-41C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.217-41C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.477-41C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.330-41C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.217-41C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.360-41C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.249-41C>T
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8470
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

3-158524793-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524793
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524792
    reference: chr 3
allele count: 1
allele frequency: 9.091239681442962e-6
allele num: 109996
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.360-35delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.217-35delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.217-35delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*101-35delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.249-35delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*114-35delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.255-35delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.330-35delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.297-35delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.282-35delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.477-35delC
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 5180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: TC
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

3-158524794-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524794
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524794
    reference: chr 3
allele count: 10
allele frequency: 9.114607069289243e-5
allele num: 109714
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*114-35C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.330-35C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.249-35C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.297-35C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.360-35C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.282-35C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.255-35C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.217-35C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*101-35C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.477-35C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.217-35C>T
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10451
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

3-158524797-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524797
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524797
    reference: chr 3
allele count: 1
allele frequency: 8.870595749210517e-6
allele num: 112732
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.217-32T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.249-32T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.297-32T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*114-32T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.477-32T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.282-32T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*101-32T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.217-32T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.255-32T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.330-32T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.360-32T>C
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

3-158524800-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524800
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524800
    reference: chr 3
allele count: 6
allele frequency: 5.230672664504655e-5
allele num: 114708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.297-29C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.217-29C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.249-29C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*101-29C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*114-29C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.282-29C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.330-29C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.217-29C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.477-29C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.255-29C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.360-29C>T
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-158524801-TCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524801
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524799
    reference: chr 3
allele count: 1
allele frequency: 8.662058451570432e-6
allele num: 115446
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.255-27_255-26delCA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.297-27_297-26delCA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.360-27_360-26delCA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.217-27_217-26delCA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.282-27_282-26delCA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*114-27_*114-26delCA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.330-27_330-26delCA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.477-27_477-26delCA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.217-27_217-26delCA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.249-27_249-26delCA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*101-27_*101-26delCA
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: TCA
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/3-158524803-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524803
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524803
    reference: chr 3
allele count: 6
allele frequency: 5.141035747335229e-5
allele num: 116708
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.477-26A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.255-26A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.330-26A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.217-26A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*114-26A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.282-26A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.249-26A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.217-26A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*101-26A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.360-26A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.297-26A>C
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30318
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

3-158524803-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524803
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524803
    reference: chr 3
allele count: 1
allele frequency: 8.568392912225382e-6
allele num: 116708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.249-26A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.477-26A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.360-26A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.297-26A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.255-26A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*101-26A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.330-26A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*114-26A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.282-26A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.217-26A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.217-26A>G
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

3-158524809-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524809
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524809
    reference: chr 3
allele count: 2
allele frequency: 1.684579360533675e-5
allele num: 118724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*101-20A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.217-20A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.282-20A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.217-20A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.297-20A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.330-20A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.255-20A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.360-20A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*114-20A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.249-20A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.477-20A>G
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12029
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-158524812-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524812
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524812
    reference: chr 3
allele count: 1
allele frequency: 8.391937026904549e-6
allele num: 119162
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.282-17C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.360-17C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*114-17C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.217-17C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.255-17C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.297-17C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*101-17C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.330-17C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.249-17C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.477-17C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.217-17C>G
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

3-158524814-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524814
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524814
    reference: chr 3
allele count: 1
allele frequency: 8.376893177858196e-6
allele num: 119376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.255-15T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*114-15T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.330-15T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*101-15T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.297-15T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.217-15T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.282-15T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.477-15T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.217-15T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.249-15T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.360-15T>G
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12138
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

3-158524833-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524833
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524833
    reference: chr 3
allele count: 1
allele frequency: 8.301235223801302e-6
allele num: 120464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.253G>A
  hgvsp: ENSP00000419708.2:p.Gly85Ser
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.301G>A
  hgvsp: ENSP00000418503.1:p.Gly101Ser
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.481G>A
  hgvsp: ENSP00000403117.2:p.Gly161Ser
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*118G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.334G>A
  hgvsp: ENSP00000264266.5:p.Gly112Ser
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*105G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.259G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.221G>A
  hgvsp: ENSP00000419467.2:p.Gly74Glu
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.286G>A
  hgvsp: ENSP00000417414.1:p.Gly96Ser
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.364G>A
  hgvsp: ENSP00000376560.4:p.Gly122Ser
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.221G>A
  hgvsp: ENSP00000417950.2:p.Gly74Glu
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly161Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

3-158524834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524834
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524834
    reference: chr 3
allele count: 1
allele frequency: 8.299581701082266e-6
allele num: 120488
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.260G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.482G>A
  hgvsp: ENSP00000403117.2:p.Gly161Asp
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.335G>A
  hgvsp: ENSP00000264266.5:p.Gly112Asp
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.222G>A
  hgvsp: ENST00000484166.1:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.365G>A
  hgvsp: ENSP00000376560.4:p.Gly122Asp
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.302G>A
  hgvsp: ENSP00000418503.1:p.Gly101Asp
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.254G>A
  hgvsp: ENSP00000419708.2:p.Gly85Asp
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.287G>A
  hgvsp: ENSP00000417414.1:p.Gly96Asp
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*106G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*119G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.222G>A
  hgvsp: ENST00000480292.1:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly161Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-158524836-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524836
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524835
    reference: chr 3
allele count: 1
allele frequency: 8.29462508294625e-6
allele num: 120560
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.257delC
  hgvsp: ENSP00000419708.2:p.Thr86LysfsTer26
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.338delC
  hgvsp: ENSP00000264266.5:p.Thr113LysfsTer26
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.485delC
  hgvsp: ENSP00000403117.2:p.Thr162LysfsTer26
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.290delC
  hgvsp: ENSP00000417414.1:p.Thr97LysfsTer?
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*122delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.225delC
  hgvsp: ENSP00000417950.2:p.His75GlnfsTer354
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.368delC
  hgvsp: ENSP00000376560.4:p.Thr123LysfsTer26
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.305delC
  hgvsp: ENSP00000418503.1:p.Thr102LysfsTer26
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*109delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.225delC
  hgvsp: ENSP00000419467.2:p.His75GlnfsTer318
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.263delC
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6380
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr162LysfsTer26
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: AC
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-158524850-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524850
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524850
    reference: chr 3
allele count: 1
allele frequency: 8.274994621253496e-6
allele num: 120846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*135C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.303C>T
  hgvsp: ENST00000486568.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*1C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.318C>T
  hgvsp: ENST00000482835.1:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*1C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.381C>T
  hgvsp: ENST00000392813.4:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.351C>T
  hgvsp: ENST00000264266.8:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.498C>T
  hgvsp: ENST00000415822.2:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.270C>T
  hgvsp: ENST00000474670.2:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*122C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.276C>T
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser166Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

3-158524852-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524852
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524852
    reference: chr 3
allele count: 1
allele frequency: 8.272667107875579e-6
allele num: 120880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.353G>T
  hgvsp: ENSP00000264266.5:p.Cys118Phe
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.500G>T
  hgvsp: ENSP00000403117.2:p.Cys167Phe
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.278G>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.272G>T
  hgvsp: ENSP00000419708.2:p.Cys91Phe
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*3G>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*3G>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*137G>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.305G>T
  hgvsp: ENSP00000417414.1:p.Cys102Phe
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.383G>T
  hgvsp: ENSP00000376560.4:p.Cys128Phe
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.320G>T
  hgvsp: ENSP00000418503.1:p.Cys107Phe
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*124G>T
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys167Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

3-158524877-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524877
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524877
    reference: chr 3
allele count: 1
allele frequency: 8.256138438929344e-6
allele num: 121122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.324+6G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.339+6G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.372+6G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*143+6G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.402+6G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*22+6G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.291+6G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*22+6G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*156+6G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.297+6G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.519+6G>A
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.519+6G>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

3-158524879-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524879
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524879
    reference: chr 3
allele count: 2
allele frequency: 1.651173158529135e-5
allele num: 121126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*22+8A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.297+8A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*22+8A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.519+8A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.324+8A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.372+8A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*156+8A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*143+8A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.339+8A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.291+8A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.402+8A>G
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.519+8A>G
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/3-158524885-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524885
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524885
    reference: chr 3
allele count: 1
allele frequency: 8.254502831294471e-6
allele num: 121146
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*143+14A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*156+14A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.519+14A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*22+14A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.339+14A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.291+14A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.372+14A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*22+14A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.324+14A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.402+14A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.297+14A>C
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

3-158524898-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524898
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524898
    reference: chr 3
allele count: 1
allele frequency: 8.253685270473266e-6
allele num: 121158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*143+27T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*22+27T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*22+27T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.519+27T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*156+27T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.297+27T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.339+27T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.291+27T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.372+27T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.402+27T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.324+27T>C
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD

3-158524903-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524903
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524903
    reference: chr 3
allele count: 6
allele frequency: 4.951965930474398e-5
allele num: 121164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*22+32G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*22+32G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.291+32G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.372+32G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.339+32G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.324+32G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*156+32G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*143+32G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.402+32G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.297+32G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.519+32G>C
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12594
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

3-158524923-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158524923
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158524923
    reference: chr 3
allele count: 2
allele frequency: 1.65128222064433e-5
allele num: 121118
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.291+52T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.372+52T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.519+52T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.324+52T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.339+52T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*22+52T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*156+52T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.297+52T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*143+52T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*22+52T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.402+52T>C
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12871
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

3-158525165-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158525165
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158525165
    reference: chr 3
allele count: 819
allele frequency: 6.757648767286049e-3
allele num: 121196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.298-20C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*157-20C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.520-20C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*23-20C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.373-20C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.340-20C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*23-20C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.403-20C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.325-20C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.292-20C>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*144-20C>G
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6307
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 9.75e1
  variant carriers: 500
genotype depth: GenotypeDepth
  all individuals: 4345
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6774
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 8.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 6.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 7.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6731
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 8.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 7.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
num of homozygotes: 33
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum

3-158525166-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158525166
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158525166
    reference: chr 3
allele count: 251
allele frequency: 2.070547086385534e-3
allele num: 121224
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.292-19A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.298-19A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.520-19A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.373-19A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.340-19A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*157-19A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*23-19A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*144-19A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.403-19A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.325-19A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*23-19A>G
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 9.75e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 6823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6347
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
num of homozygotes: 7
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

3-158525172-T-TTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158525172
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158525174
    reference: chr 3
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: TTC
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*23-11_*23-10dupCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*157-11_*157-10dupCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.373-11_373-10dupCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*23-11_*23-10dupCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.292-11_292-10dupCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.340-11_340-10dupCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.325-11_325-10dupCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.520-11_520-10dupCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.403-11_403-10dupCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.298-11_298-10dupCT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*144-11_*144-10dupCT
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6803
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

3-158525176-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158525176
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158525176
    reference: chr 3
allele count: 4
allele frequency: 3.298914657077821e-5
allele num: 121252
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.520-9A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*23-9A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*157-9A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.325-9A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.373-9A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.298-9A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.403-9A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*23-9A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.292-9A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*144-9A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.340-9A>G
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

3-158525177-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158525177
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158525177
    reference: chr 3
allele count: 50
allele frequency: 4.123643321347277e-4
allele num: 121252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.403-8C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.373-8C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.325-8C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.340-8C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*157-8C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*144-8C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*23-8C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.292-8C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.520-8C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*23-8C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.298-8C>T
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6797
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6846
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6780
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5320
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 5404
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.520-8C>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

3-158525185-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158525185
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158525185
    reference: chr 3
allele count: 13
allele frequency: 1.071846709430602e-4
allele num: 121286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*144G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.340G>A
  hgvsp: ENSP00000418503.1:p.Val114Ile
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.325G>A
  hgvsp: ENSP00000417414.1:p.Val109Ile
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*157G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*23G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.403G>A
  hgvsp: ENSP00000376560.4:p.Val135Ile
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.292G>A
  hgvsp: ENSP00000419708.2:p.Val98Ile
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.520G>A
  hgvsp: ENSP00000403117.2:p.Val174Ile
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*23G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.373G>A
  hgvsp: ENSP00000264266.5:p.Val125Ile
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.298G>A
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val174Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

3-158525186-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158525186
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158525186
    reference: chr 3
allele count: 3
allele frequency: 2.473370049137618e-5
allele num: 121292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.341T>C
  hgvsp: ENSP00000418503.1:p.Val114Ala
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*158T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.326T>C
  hgvsp: ENSP00000417414.1:p.Val109Ala
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.374T>C
  hgvsp: ENSP00000264266.5:p.Val125Ala
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.404T>C
  hgvsp: ENSP00000376560.4:p.Val135Ala
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*24T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*24T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.299T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.521T>C
  hgvsp: ENSP00000403117.2:p.Val174Ala
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.293T>C
  hgvsp: ENSP00000419708.2:p.Val98Ala
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*145T>C
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5301
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val174Ala
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ

3-158525187-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158525187
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158525187
    reference: chr 3
allele count: 19
allele frequency: 1.566467697787158e-4
allele num: 121292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.405T>C
  hgvsp: ENST00000392813.4:c.405T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*25T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*159T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*146T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.294T>C
  hgvsp: ENST00000474670.2:c.294T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.327T>C
  hgvsp: ENST00000486568.1:c.327T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.300T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.375T>C
  hgvsp: ENST00000264266.8:c.375T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.522T>C
  hgvsp: ENST00000415822.2:c.522T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.342T>C
  hgvsp: ENST00000482835.1:c.342T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*25T>C
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.522T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

3-158525187-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158525187
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158525187
    reference: chr 3
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.300T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*146T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*25T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.342T>G
  hgvsp: ENST00000482835.1:c.342T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.327T>G
  hgvsp: ENST00000486568.1:c.327T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.405T>G
  hgvsp: ENST00000392813.4:c.405T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.375T>G
  hgvsp: ENST00000264266.8:c.375T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*159T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.522T>G
  hgvsp: ENST00000415822.2:c.522T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*25T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.294T>G
  hgvsp: ENST00000474670.2:c.294T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.522T>G
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

3-158525195-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158525195
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158525195
    reference: chr 3
allele count: 8
allele frequency: 6.594566077552098e-5
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.530C>T
  hgvsp: ENSP00000403117.2:p.Ala177Val
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.335C>T
  hgvsp: ENSP00000417414.1:p.Ala112Val
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*167C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.413C>T
  hgvsp: ENSP00000376560.4:p.Ala138Val
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.383C>T
  hgvsp: ENSP00000264266.5:p.Ala128Val
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.350C>T
  hgvsp: ENSP00000418503.1:p.Ala117Val
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.302C>T
  hgvsp: ENSP00000419708.2:p.Ala101Val
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.308C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*154C>T
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5304
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala177Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

3-158525200-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158525200
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158525200
    reference: chr 3
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.418G>C
  hgvsp: ENSP00000376560.4:p.Gly140Arg
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.307G>C
  hgvsp: ENSP00000419708.2:p.Gly103Arg
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417414
  ensembl transcript: ENST00000486568
  gene symbol: MFSD1
  hgvsc: ENST00000486568.1:c.340G>C
  hgvsp: ENSP00000417414.1:p.Gly114Arg
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.355G>C
  hgvsp: ENSP00000418503.1:p.Gly119Arg
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.388G>C
  hgvsp: ENSP00000264266.5:p.Gly130Arg
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.535G>C
  hgvsp: ENSP00000403117.2:p.Gly179Arg
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*159G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*172G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.313G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*38G>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*38G>C
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly179Arg
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

3-158525225-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158525225
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158525225
    reference: chr 3
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*63T>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.560T>A
  hgvsp: ENSP00000403117.2:p.Leu187Gln
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.413T>A
  hgvsp: ENSP00000264266.5:p.Leu138Gln
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000418503
  ensembl transcript: ENST00000482835
  gene symbol: MFSD1
  hgvsc: ENST00000482835.1:c.380T>A
  hgvsp: ENSP00000418503.1:p.Leu127Gln
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*197T>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*63T>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.332T>A
  hgvsp: ENSP00000419708.2:p.Leu111Gln
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.338T>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*184T>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.443T>A
  hgvsp: ENSP00000376560.4:p.Leu148Gln
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu187Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

3-158525236-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158525236
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158525236
    reference: chr 3
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*195G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.424G>A
  hgvsp: ENSP00000264266.5:p.Gly142Arg
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*74G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*208G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.454G>A
  hgvsp: ENSP00000376560.4:p.Gly152Arg
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.571G>A
  hgvsp: ENSP00000403117.2:p.Gly191Arg
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.343G>A
  hgvsp: ENSP00000419708.2:p.Gly115Arg
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*74G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.349G>A
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3214
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly191Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

3-158525256-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158525256
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158525256
    reference: chr 3
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*90+4A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.587+4A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.440+4A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*90+4A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.365+4A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*224+4A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*211+4A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.470+4A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.359+4A>G
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6883
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
hgvs: c.587+4A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

3-158525264-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158525264
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158525264
    reference: chr 3
allele count: 16
allele frequency: 1.320044881525972e-4
allele num: 121208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.440+12A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.365+12A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.587+12A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.359+12A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*90+12A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*211+12A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*224+12A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*90+12A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.470+12A>G
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5303
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3330
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

3-158525268-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158525268
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158525268
    reference: chr 3
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.365+16T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.587+16T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*90+16T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*90+16T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*224+16T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.470+16T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*211+16T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.440+16T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.359+16T>C
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6777
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3083
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

3-158525284-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158525284
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158525284
    reference: chr 3
allele count: 17
allele frequency: 1.404355153157321e-4
allele num: 121052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.440+32G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.365+32G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*90+32G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*90+32G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.587+32G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.359+32G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*224+32G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.470+32G>A
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*211+32G>A
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5410
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6753
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6364
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36625
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3050
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-158525304-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158525304
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158525304
    reference: chr 3
allele count: 1
allele frequency: 8.273899157717065e-6
allele num: 120862
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*224+52A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.587+52A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.470+52A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.359+52A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.440+52A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.365+52A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*90+52A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*211+52A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*90+52A>G
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6632
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36605
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3193
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-158526935-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526935
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526935
    reference: chr 3
allele count: 5
allele frequency: 4.328179913782656e-5
allele num: 115522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.471-33A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*225-33A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*91-33A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*212-33A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*91-33A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.441-33A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.588-33A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.360-33A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.366-33A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.145A>T
  variant of: http://identifiers.org/hgnc/25874
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7902
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8109
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

3-158526940-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526940
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526941
    reference: chr 3
allele count: 10
allele frequency: 8.687644432088683e-5
allele num: 115106
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.360-26dupG
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.152dupG
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*225-26dupG
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*91-26dupG
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.471-26dupG
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*91-26dupG
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*212-26dupG
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.441-26dupG
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.366-26dupG
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.588-26dupG
  variant of: http://identifiers.org/hgnc/25874
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 10846
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6707
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5545
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11135
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8218
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2236
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

3-158526940-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526940
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526939
    reference: chr 3
allele count: 6
allele frequency: 5.21258665925321e-5
allele num: 115106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*212-26delG
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*91-26delG
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.471-26delG
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.441-26delG
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*225-26delG
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.360-26delG
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.588-26delG
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.366-26delG
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.152delG
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*91-26delG
  variant of: http://identifiers.org/hgnc/25874
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8218
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5545
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10846
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: TG
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

3-158526940-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526940
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526940
    reference: chr 3
allele count: 1
allele frequency: 8.687644432088684e-6
allele num: 115106
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*212-28T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.441-28T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.471-28T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.360-28T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*91-28T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.150T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*91-28T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.366-28T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*225-28T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.588-28T>C
  variant of: http://identifiers.org/hgnc/25874
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 11135
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10846
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

3-158526942-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526942
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526943
    reference: chr 3
allele count: 11196
allele frequency: 1.623644062880678e-1
allele num: 68956
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.167dupT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.588-11dupT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.360-11dupT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*225-11dupT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*212-11dupT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*91-11dupT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.366-11dupT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.471-11dupT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*91-11dupT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.441-11dupT
  variant of: http://identifiers.org/hgnc/25874
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7244
  bin: 4.25e1
  variant carriers: 1668
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.25e1
  variant carriers: 351
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 8436
  bin: 3.25e1
  variant carriers: 2292
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 4.75e1
  variant carriers: 1070
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 5.75e1
  variant carriers: 373
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 2.75e1
  variant carriers: 1874
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 2.25e1
  variant carriers: 1195
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 5.25e1
  variant carriers: 681
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 1.75e1
  variant carriers: 693
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.5e0
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 6.25e1
  variant carriers: 257
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 3.75e1
  variant carriers: 2202
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 9.75e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 6.75e1
  variant carriers: 180
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 4.25e1
  variant carriers: 592
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 3.75e1
  variant carriers: 556
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 6.25e1
  variant carriers: 497
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

3-158526942-G-GTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526942
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526944
    reference: chr 3
allele count: 162
allele frequency: 2.34932420674053e-3
allele num: 68956
alternate allele: GTT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*212-12_*212-11dupTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.471-12_471-11dupTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*91-12_*91-11dupTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.588-12_588-11dupTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*91-12_*91-11dupTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.360-12_360-11dupTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.166_167dupTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*225-12_*225-11dupTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.366-12_366-11dupTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.441-12_441-11dupTT
  variant of: http://identifiers.org/hgnc/25874
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7244
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 2.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 2.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 8436
  bin: 3.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 1.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 4.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 6.75e1
  variant carriers: 7
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

3-158526942-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526942
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526942
    reference: chr 3
allele count: 11
allele frequency: 1.595220140379372e-4
allele num: 68956
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8436
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3012
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17268
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2783
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2348
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8155
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4958
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6062
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 6
  allele frequency: 9.239297813366184e-4
  allele num: 6494
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6070
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

3-158526942-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526942
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526941
    reference: chr 3
allele count: 17262
allele frequency: 2.50333546029352e-1
allele num: 68956
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.167delT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.441-11delT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*225-11delT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.366-11delT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*212-11delT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.360-11delT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*91-11delT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*91-11delT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.471-11delT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.588-11delT
  variant of: http://identifiers.org/hgnc/25874
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 5.25e1
  variant carriers: 1251
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.75e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.5e0
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.25e1
  variant carriers: 335
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 1.75e1
  variant carriers: 820
genotype depth: GenotypeDepth
  all individuals: 8436
  bin: 3.25e1
  variant carriers: 3589
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 6.25e1
  variant carriers: 536
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 5.75e1
  variant carriers: 807
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 4.75e1
  variant carriers: 1938
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 2.75e1
  variant carriers: 2885
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 6.75e1
  variant carriers: 352
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 2.25e1
  variant carriers: 1727
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.25e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 9.75e1
  variant carriers: 289
genotype depth: GenotypeDepth
  all individuals: 7244
  bin: 4.25e1
  variant carriers: 2797
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 3.75e1
  variant carriers: 3483
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 7.75e1
  variant carriers: 639
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 6.75e1
  variant carriers: 799
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 4.75e1
  variant carriers: 1011
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: GT
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

3-158526942-GTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526942
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526940
    reference: chr 3
allele count: 219
allele frequency: 3.175938279482569e-3
allele num: 68956
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.366-12_366-11delTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*91-12_*91-11delTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*212-12_*212-11delTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*91-12_*91-11delTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*225-12_*225-11delTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.360-12_360-11delTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.166_167delTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.588-12_588-11delTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.441-12_441-11delTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.471-12_471-11delTT
  variant of: http://identifiers.org/hgnc/25874
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 2.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 4.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 3.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 8436
  bin: 3.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 2.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7244
  bin: 4.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 3.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 17268
  bin: 2.5e0
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 3012
  bin: 7.5e0
  variant carriers: 47
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: GTT
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

3-158526942-GTTTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526942
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526938
    reference: chr 3
allele count: 34
allele frequency: 4.930680433899878e-4
allele num: 68956
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8436
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7244
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3012
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2783
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8155
  bin: 9.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17268
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
  type: Population
  allele count: 34
  allele frequency: 6.857603872529245e-3
  allele num: 4958
  num of homozygotes: 1
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6494
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 504
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6070
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: GTTTT
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

3-158526951-T-TTTTTTTTTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526951
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526960
    reference: chr 3
allele count: 1
allele frequency: 8.544525522497736e-6
allele num: 117034
alternate allele: TTTTTTTTTA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.167_168insTTATTTTTT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  variant of: http://identifiers.org/hgnc/25874
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6124
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3986
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff

3-158526953-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526953
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526953
    reference: chr 3
allele count: 1
allele frequency: 8.465680132741865e-6
allele num: 118124
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.588-15T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*225-15T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.360-15T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*91-15T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*91-15T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.163T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.441-15T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.471-15T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*212-15T>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.366-15T>G
  variant of: http://identifiers.org/hgnc/25874
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3990
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14659
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5729
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

3-158526954-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526954
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526954
    reference: chr 3
allele count: 1
allele frequency: 8.432698632216282e-6
allele num: 118586
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.471-14T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.366-14T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*91-14T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*91-14T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*212-14T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.588-14T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.441-14T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.164T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*225-14T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.360-14T>C
  variant of: http://identifiers.org/hgnc/25874
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4472
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

3-158526955-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526955
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526955
    reference: chr 3
allele count: 1
allele frequency: 8.400114241553686e-6
allele num: 119046
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.165T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.366-13T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*212-13T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*91-13T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.471-13T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.441-13T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.360-13T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*225-13T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*91-13T>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.588-13T>C
  variant of: http://identifiers.org/hgnc/25874
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12562
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

3-158526957-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526957
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526956
    reference: chr 3
allele count: 7
allele frequency: 5.919161170302723e-5
allele num: 118260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*225-10delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*91-10delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*212-10delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.360-10delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*91-10delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.588-10delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.441-10delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.168delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.366-10delC
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.471-10delC
  variant of: http://identifiers.org/hgnc/25874
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3640
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: TC
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

3-158526957-TCTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526957
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526954
    reference: chr 3
allele count: 264
allele frequency: 2.232369355657027e-3
allele num: 118260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.360-10_360-8delCTA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.471-10_471-8delCTA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*91-10_*91-8delCTA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*91-10_*91-8delCTA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.366-10_366-8delCTA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*225-10_*225-8delCTA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.168_170delCTA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.588-10_588-8delCTA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*212-10_*212-8delCTA
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.441-10_441-8delCTA
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 3.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 2.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6326
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 5.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 1.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 2.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 5343
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 4.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
hgvs: c.588-10_588-8delCTA
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: TCTA
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-158526958-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526958
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526958
    reference: chr 3
allele count: 17576
allele frequency: 3.641788570718164e-1
allele num: 48262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.471-10C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.168C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.360-10C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.588-10C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*225-10C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.366-10C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*91-10C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*91-10C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*212-10C>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.441-10C>T
  variant of: http://identifiers.org/hgnc/25874
canonical: false
consequence: non coding transcript exon
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 6.25e1
  variant carriers: 1825
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 4.25e1
  variant carriers: 1269
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 3.25e1
  variant carriers: 595
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 8.25e1
  variant carriers: 708
genotype depth: GenotypeDepth
  all individuals: 5466
  bin: 4.75e1
  variant carriers: 1631
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 7.25e1
  variant carriers: 1239
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 2.75e1
  variant carriers: 431
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 6.75e1
  variant carriers: 1538
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 1.25e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 7.75e1
  variant carriers: 902
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 3.75e1
  variant carriers: 907
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 5.25e1
  variant carriers: 1889
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 8.75e1
  variant carriers: 476
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 5.75e1
  variant carriers: 1955
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 2.25e1
  variant carriers: 359
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 9.25e1
  variant carriers: 351
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 1.75e1
  variant carriers: 296
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 9.75e1
  variant carriers: 1497
genotype quality: GenotypeQuality
  all individuals: 15243
  bin: 9.75e1
  variant carriers: 14922
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 5.25e1
  variant carriers: 166
genotype quality: GenotypeQuality
  all individuals: 31143
  bin: 2.5e0
  variant carriers: 86
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/3-158526960-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526960
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526960
    reference: chr 3
allele count: 2
allele frequency: 2.640473172792564e-5
allele num: 75744
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*225-8A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.441-8A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.366-8A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*91-8A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.588-8A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*212-8A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.170A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.360-8A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*91-8A>C
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.471-8A>C
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.588-8A>C
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-158526960-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526960
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526960
    reference: chr 3
allele count: 2
allele frequency: 2.640473172792564e-5
allele num: 75744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*212-8A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*91-8A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*225-8A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.588-8A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.360-8A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*91-8A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.471-8A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.170A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.366-8A>G
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.441-8A>G
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.588-8A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

3-158526960-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526960
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526960
    reference: chr 3
allele count: 17429
allele frequency: 2.30104034643008e-1
allele num: 75744
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.471-8A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.441-8A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*212-8A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.360-8A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.170A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*91-8A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*225-8A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*91-8A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.366-8A>T
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.588-8A>T
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 4.75e1
  variant carriers: 1273
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 3.75e1
  variant carriers: 640
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 7.25e1
  variant carriers: 1470
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 8.25e1
  variant carriers: 870
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 7.75e1
  variant carriers: 1230
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 6.75e1
  variant carriers: 1646
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 5.25e1
  variant carriers: 1513
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 9.25e1
  variant carriers: 517
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 1.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 1.75e1
  variant carriers: 265
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 3.25e1
  variant carriers: 447
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 5.75e1
  variant carriers: 1810
genotype depth: GenotypeDepth
  all individuals: 5926
  bin: 2.75e1
  variant carriers: 359
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 9.75e1
  variant carriers: 2026
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 4.25e1
  variant carriers: 919
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 8.75e1
  variant carriers: 728
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 2.25e1
  variant carriers: 310
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 6.25e1
  variant carriers: 1787
genotype quality: GenotypeQuality
hgvs: c.588-8A>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

3-158526960-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 158526960
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 158526959
    reference: chr 3
allele count: 1
allele frequency: 1.320236586396282e-5
allele num: 75744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000489639
  gene symbol: MFSD1
  hgvsc: ENST00000489639.1:n.175delT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419467
  ensembl transcript: ENST00000480292
  gene symbol: MFSD1
  hgvsc: ENST00000480292.1:c.*91-3delT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl transcript: ENST00000476860
  gene symbol: MFSD1
  hgvsc: ENST00000476860.1:n.366-3delT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000376560
  ensembl transcript: ENST00000392813
  gene symbol: MFSD1
  hgvsc: ENST00000392813.4:c.471-3delT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000420816
  ensembl transcript: ENST00000471500
  gene symbol: MFSD1
  hgvsc: ENST00000471500.1:c.*212-3delT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000264266
  ensembl transcript: ENST00000264266
  gene symbol: MFSD1
  hgvsc: ENST00000264266.8:c.441-3delT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419708
  ensembl transcript: ENST00000474670
  gene symbol: MFSD1
  hgvsc: ENST00000474670.2:c.360-3delT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000403117
  ensembl transcript: ENST00000415822
  gene symbol: MFSD1
  hgvsc: ENST00000415822.2:c.588-3delT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000417950
  ensembl transcript: ENST00000484166
  gene symbol: MFSD1
  hgvsc: ENST00000484166.1:c.*91-3delT
  variant of: http://identifiers.org/hgnc/25874
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000118855
  ensembl protein: ENSP00000419281
  ensembl transcript: ENST00000471266
  gene symbol: MFSD1
  hgvsc: ENST00000471266.1:c.*225-3delT
  variant of: http://identifiers.org/hgnc/25874
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 1.75e1
  variant carriers: 0
hgvs: c.588-3delT
num of homozygotes: 0
reference allele: AT

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2848
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25842
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3996
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4933
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11130
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4521
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4643
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2691
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997512064986062e-5
allele num: 66722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.52e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

DP
type: SiteQuality
SIO_000300: 2.353736e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.314e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 6.48e0

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.21e-1

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3996
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4925
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4642
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2847
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4521
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25841
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11051
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-1

QD
type: SiteQuality
SIO_000300: 1.418e1

DP
type: SiteQuality
SIO_000300: 2.352822e6

FS
type: SiteQuality
SIO_000300: 3.053e0

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: 8.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.923e0

GenotypeQuality
all individuals: 4645
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4521
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3995
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10466
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4893
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25843
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.79e-1

QD
type: SiteQuality
SIO_000300: 1.396e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.412e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.075e0

MQRankSum
type: SiteQuality
SIO_000300: 8.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.348863e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4520
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3995
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10414
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2847
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25844
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 131
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4644
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4890
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63020030816641e-5
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.348625e6

MQ
type: SiteQuality
SIO_000300: 5.682e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.66e-1

FS
type: SiteQuality
SIO_000300: 2.409e0

MQRankSum
type: SiteQuality
SIO_000300: 6.21e-1

QD
type: SiteQuality
SIO_000300: 1.274e1

GenotypeQuality
all individuals: 2846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4646
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4892
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4521
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10311
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25843
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3995
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.955e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.348231e6

MQRankSum
type: SiteQuality
SIO_000300: -7.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.434e0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25852
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4804
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2827
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9568
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4631
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3995
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2687
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4520
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 10
allele frequency: 9.641342074816814e-4
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.02e-1

FS
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.992e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.0e-2

DP
type: SiteQuality
SIO_000300: 2.348003e6

QD
type: SiteQuality
SIO_000300: 1.23e1

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

GenotypeQuality
all individuals: 5292
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3944
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3247
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1673
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4298
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4486
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2663
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5898
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.984757065735154e-5
allele num: 50384
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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VQSLOD
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SIO_000300: -1.562e0

ClippingRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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DP
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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MQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.73148180212626e-5
allele num: 57754
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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BaseQRankSum
type: SiteQuality
SIO_000300: 8.99e-1

VQSLOD
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ClippingRankSum
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ReadPosRankSum
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FS
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MQRankSum
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QD
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InbreedingCoeff
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 1.064131668558456e-4
allele num: 56384
num of homozygotes: 0

East Asian
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allele frequency: 1.391982182628062e-4
allele num: 7184
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 3.504672897196261e-4
allele num: 8560
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South Asian
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Other
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BaseQRankSum
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SIO_000300: -2.122e0

InbreedingCoeff
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SIO_000300: -6.5e-3

QD
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MQ
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ClippingRankSum
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.678077594307961e-5
allele num: 59592
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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QD
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SIO_000300: 8.73e0

ClippingRankSum
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SIO_000300: 3.41e-1

MQRankSum
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InbreedingCoeff
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DP
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SIO_000300: 1.648728e6

MQ
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SIO_000300: 6.021e1

BaseQRankSum
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SIO_000300: 6.97e-1

FS
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SIO_000300: 1.838e0

ReadPosRankSum
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SIO_000300: -2.606e0

VQSLOD
type: SiteQuality
SIO_000300: 3.29e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 2
allele frequency: 2.209944751381215e-4
allele num: 9050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.177737398209839e-4
allele num: 59436
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.302761855132882e-4
allele num: 7676
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FS
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SIO_000300: 2.0468e1

ClippingRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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DP
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MQ
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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Latino
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allele num: 10914
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European (Finnish)
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MQ
type: SiteQuality
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QD
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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FS
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 62596
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African
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South Asian
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QD
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ReadPosRankSum
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DP
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MQRankSum
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MQ
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BaseQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9550
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6510
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.586193769430874e-5
allele num: 63044
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -3.847e0

FS
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QD
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MQRankSum
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InbreedingCoeff
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SIO_000300: 1.6e-3

VQSLOD
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SIO_000300: -4.311e0

ClippingRankSum
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SIO_000300: 3.65e0

ReadPosRankSum
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SIO_000300: -4.788e0

MQ
type: SiteQuality
SIO_000300: 5.504e1

DP
type: SiteQuality
SIO_000300: 1.766895e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
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allele count: 2
allele frequency: 3.058103975535168e-4
allele num: 6540
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.267627702914446e-5
allele num: 63820
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16214
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.0e-3

ReadPosRankSum
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SIO_000300: 3.3e-1

DP
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MQRankSum
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MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.7e-1

ClippingRankSum
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SIO_000300: -2.44e-1

VQSLOD
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SIO_000300: 2.26e0

BaseQRankSum
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SIO_000300: 3.0e0

QD
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SIO_000300: 1.379e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.566906925728612e-5
allele num: 63820
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16214
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
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VQSLOD
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MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-1

BaseQRankSum
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SIO_000300: 3.0e0

DP
type: SiteQuality
SIO_000300: 1.786869e6

QD
type: SiteQuality
SIO_000300: 1.379e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.782848992690319e-4
allele num: 11218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65156
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.143e1

BaseQRankSum
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SIO_000300: -7.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.94e-1

InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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SIO_000300: 1.813409e6

FS
type: SiteQuality
SIO_000300: 4.217e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.77e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65436
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11268
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.113216774666829e-5
allele num: 16358
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

QD
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MQRankSum
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SIO_000300: 3.42e-1

InbreedingCoeff
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VQSLOD
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ClippingRankSum
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DP
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FS
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MQ
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ReadPosRankSum
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SIO_000300: -6.48e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

African
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.110975311659741e-5
allele num: 16364
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65582
num of homozygotes: 0

Other
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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FS
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DP
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QD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.08198515995621e-5
allele num: 16442
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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European (Finnish)
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Other
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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FS
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DP
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66266
num of homozygotes: 0

African
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South Asian
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num of homozygotes: 0

Other
type: Population
allele count: 0
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Latino
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allele num: 11412
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QD
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ClippingRankSum
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MQRankSum
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DP
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MQ
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FS
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VQSLOD
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SIO_000300: -4.113e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
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SIO_000300: -1.347e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.68e-1

GenotypeDepth
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bin: 8.25e1
variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.753501400560224e-5
allele num: 11424
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66300
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
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InbreedingCoeff
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -1.696e0

QD
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FS
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 1.836555e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504438092372499e-5
allele num: 66470
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.986e0

DP
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SIO_000300: 1.83945e6

ReadPosRankSum
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SIO_000300: 1.84e0

FS
type: SiteQuality
SIO_000300: 1.892e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
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SIO_000300: 9.470000000000001e0

ClippingRankSum
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SIO_000300: -5.48e-1

MQRankSum
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SIO_000300: -2.85e-1

InbreedingCoeff
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.38e-1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504257047444267e-5
allele num: 66478
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
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DP
type: SiteQuality
SIO_000300: 1.839806e6

InbreedingCoeff
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QD
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VQSLOD
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FS
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ReadPosRankSum
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SIO_000300: -2.37e-1

BaseQRankSum
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SIO_000300: -2.829e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66616
num of homozygotes: 0

African
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allele count: 0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.26e-1

ClippingRankSum
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SIO_000300: 2.5e-2

VQSLOD
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MQRankSum
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QD
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DP
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FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -3.972e0

InbreedingCoeff
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SIO_000300: 0.0e0

MQ
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SIO_000300: 5.85e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
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allele count: 2
allele frequency: 1.737317581653926e-4
allele num: 11512
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

QD
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FS
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BaseQRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

South Asian
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allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

European (Finnish)
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Latino
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African
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East Asian
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Other
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BaseQRankSum
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QD
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FS
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VQSLOD
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQRankSum
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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Other
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ReadPosRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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DP
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MQ
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FS
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32588
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8638
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6079
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1343
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2738
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 5.210142410559222e-4
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.841768e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 8.4e0

QD
type: SiteQuality
SIO_000300: 1.335e1

MQRankSum
type: SiteQuality
SIO_000300: 8.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.26e-1

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3375
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
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GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4040
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variant carriers: 0

GenotypeQuality
all individuals: 6088
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2756
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variant carriers: 0

GenotypeQuality
all individuals: 8562
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variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312138728323699e-4
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.844344e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

FS
type: SiteQuality
SIO_000300: 9.16e-1

QD
type: SiteQuality
SIO_000300: 1.352e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 3.18e0

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3172
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 3044
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 6772
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 785

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 3631
bin: 6.75e1
variant carriers: 1

South Asian
type: Population
allele count: 2
allele frequency: 1.21197430614471e-4
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 784
allele frequency: 7.57487922705314e-2
allele num: 10350
num of homozygotes: 33

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 22
allele frequency: 1.905421791096484e-3
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.350824002641611e-4
allele num: 66626
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.75e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

QD
type: SiteQuality
SIO_000300: 1.557e1

FS
type: SiteQuality
SIO_000300: 1.574e0

DP
type: SiteQuality
SIO_000300: 3.458205e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3306
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 3202
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36732
bin: 9.75e1
variant carriers: 244

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 6873
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variant carriers: 0

GenotypeQuality
all individuals: 3674
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variant carriers: 0

GenotypeQuality
all individuals: 3080
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 1793
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.453223460979156e-4
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001380635092142e-5
allele num: 66636
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 238
allele frequency: 2.751445086705202e-2
allele num: 8650
num of homozygotes: 7

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 7.77e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

VQSLOD
type: SiteQuality
SIO_000300: 4.66e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.69e-2

DP
type: SiteQuality
SIO_000300: 3.426152e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.161e0

GenotypeQuality
all individuals: 36652
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3217
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 3086
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 1867
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
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GenotypeQuality
all individuals: 1798
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3329
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3688
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6910
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.652509652509652e-5
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.15e-1

DP
type: SiteQuality
SIO_000300: 3.409248e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.93e-1

FS
type: SiteQuality
SIO_000300: 8.052e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.542e0

MQRankSum
type: SiteQuality
SIO_000300: -1.837e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

QD
type: SiteQuality
SIO_000300: 1.798e1

GenotypeQuality
all individuals: 1798
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 3084
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3689
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3216
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.861003861003861e-4
allele num: 10360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.452e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.41e0

FS
type: SiteQuality
SIO_000300: 6.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

DP
type: SiteQuality
SIO_000300: 3.409471e6

GenotypeDepth
all individuals: 547
bin: 9.25e1
variant carriers: 4

GenotypeDepth
all individuals: 3326
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 57
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 3081
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 3212
bin: 8.25e1
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GenotypeQuality
all individuals: 3686
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6930
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3326
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36660
bin: 9.75e1
variant carriers: 50

African
type: Population
allele count: 48
allele frequency: 4.633204633204633e-3
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5004651441947e-5
allele num: 66646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: 3.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.686e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

FS
type: SiteQuality
SIO_000300: 1.386e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 3.412311e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.15e0

QD
type: SiteQuality
SIO_000300: 1.193e1

GenotypeDepth
all individuals: 6799
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5307
bin: 9.75e1
variant carriers: 11

GenotypeDepth
all individuals: 681
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 3328
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
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GenotypeQuality
all individuals: 47
bin: 2.25e1
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GenotypeQuality
all individuals: 3084
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
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GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6964
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 13

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.950136509555669e-4
allele num: 66662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

QD
type: SiteQuality
SIO_000300: 1.155e1

FS
type: SiteQuality
SIO_000300: 1.907e0

DP
type: SiteQuality
SIO_000300: 3.410243e6

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

InbreedingCoeff
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SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.532e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.499910001799964e-5
allele num: 66668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
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SIO_000300: 8.03e-1

DP
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SIO_000300: 3.409314e6

BaseQRankSum
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SIO_000300: 4.33e0

FS
type: SiteQuality
SIO_000300: 1.241e0

QD
type: SiteQuality
SIO_000300: 1.435e1

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 9

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 19

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3693
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.699946001079978e-4
allele num: 66668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 1.94e0

VQSLOD
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SIO_000300: 5.01e0

DP
type: SiteQuality
SIO_000300: 3.410616e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.41e-2

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

QD
type: SiteQuality
SIO_000300: 1.322e1

GenotypeDepth
all individuals: 6367
bin: 4.75e1
variant carriers: 0

GenotypeDepth
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bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 544
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 1868
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 3216
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 3329
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
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SIO_000300: 3.410616e6

ReadPosRankSum
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SIO_000300: 8.29e-1

BaseQRankSum
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SIO_000300: 1.94e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.72e-1

QD
type: SiteQuality
SIO_000300: 1.322e1

VQSLOD
type: SiteQuality
SIO_000300: 5.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.41e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.99847026005579e-5
allele num: 66678
num of homozygotes: 0

VQSLOD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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QD
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SIO_000300: 1.001e1

FS
type: SiteQuality
SIO_000300: 1.176e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

European (Finnish)
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allele count: 0
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QD
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MQ
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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DP
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FS
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

FS
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MQ
type: SiteQuality
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QD
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ReadPosRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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SIO_000300: 3.83e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

Other
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allele count: 0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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BaseQRankSum
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SIO_000300: -5.872e0

ClippingRankSum
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SIO_000300: 5.39e-1

MQ
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InbreedingCoeff
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SIO_000300: 0.0e0

FS
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MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

QD
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DP
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
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South Asian
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allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

QD
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DP
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MQRankSum
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
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allele count: 14
allele frequency: 2.100903388457037e-4
allele num: 66638
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
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allele count: 2
allele frequency: 3.02571860816944e-4
allele num: 6610
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e0

DP
type: SiteQuality
SIO_000300: 3.408117e6

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.623e0

MQRankSum
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SIO_000300: 9.3e-2

QD
type: SiteQuality
SIO_000300: 1.499e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.11e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500960614793468e-5
allele num: 66624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.47e-1

QD
type: SiteQuality
SIO_000300: 1.901e1

MQ
type: SiteQuality
SIO_000300: 5.944e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 5.249e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.26e0

VQSLOD
type: SiteQuality
SIO_000300: -1.75e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.179e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-2

DP
type: SiteQuality
SIO_000300: 3.40656e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.669309611293753e-5
allele num: 10342
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.254486427991703e-4
allele num: 66534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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DP
type: SiteQuality
SIO_000300: 3.400009e6

VQSLOD
type: SiteQuality
SIO_000300: 3.91e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.261e1

BaseQRankSum
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SIO_000300: -3.748e0

MQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66450
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.699321047526673e-5
allele num: 10310
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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VQSLOD
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MQ
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.11779011036977e-5
allele num: 64148
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.146788990825688e-3
allele num: 872
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8090
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 2
allele frequency: 3.055300947143294e-4
allele num: 6546
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

ClippingRankSum
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SIO_000300: 1.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.065e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.093681644897194e-4
allele num: 64004
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6544
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Latino
type: Population
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African
type: Population
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allele frequency: 3.120449344705637e-4
allele num: 9614
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Other
type: Population
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South Asian
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East Asian
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VQSLOD
type: SiteQuality
SIO_000300: -2.37e0

MQRankSum
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MQ
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InbreedingCoeff
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DP
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ReadPosRankSum
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.2262e1

ClippingRankSum
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SIO_000300: 4.2e-2

QD
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SIO_000300: 2.07e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14746
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.442075337597726e-4
allele num: 11256
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8080
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African
type: Population
allele count: 1
allele frequency: 1.040149781568546e-4
allele num: 9614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.102459e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

QD
type: SiteQuality
SIO_000300: 2.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.737e0

VQSLOD
type: SiteQuality
SIO_000300: -2.37e0

MQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

MQ
type: SiteQuality
SIO_000300: 5.568e1

FS
type: SiteQuality
SIO_000300: 1.2262e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 7851
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19154
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3372
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 2.5e0
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GenotypeQuality
all individuals: 1261
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2821
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3901
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 7.5e0
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GenotypeQuality
all individuals: 4107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4702
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2551
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.562402349853134e-5
allele num: 64004
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.102459e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

MQ
type: SiteQuality
SIO_000300: 5.568e1

VQSLOD
type: SiteQuality
SIO_000300: -2.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.737e0

FS
type: SiteQuality
SIO_000300: 1.2262e1

QD
type: SiteQuality
SIO_000300: 2.07e0

GenotypeQuality
all individuals: 2783
bin: 2.25e1
variant carriers: 565

GenotypeQuality
all individuals: 1946
bin: 5.25e1
variant carriers: 597

GenotypeQuality
all individuals: 1019
bin: 8.75e1
variant carriers: 368

GenotypeQuality
all individuals: 3012
bin: 7.5e0
variant carriers: 593

GenotypeQuality
all individuals: 1529
bin: 6.75e1
variant carriers: 499

GenotypeQuality
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bin: 7.25e1
variant carriers: 449

GenotypeQuality
all individuals: 17268
bin: 2.5e0
variant carriers: 471

GenotypeQuality
all individuals: 979
bin: 9.25e1
variant carriers: 385

GenotypeQuality
all individuals: 1151
bin: 8.25e1
variant carriers: 434

GenotypeQuality
all individuals: 2650
bin: 1.75e1
variant carriers: 589

GenotypeQuality
all individuals: 1972
bin: 4.75e1
variant carriers: 528

GenotypeQuality
all individuals: 2506
bin: 2.75e1
variant carriers: 570

GenotypeQuality
all individuals: 2348
bin: 3.25e1
variant carriers: 556

GenotypeQuality
all individuals: 1234
bin: 7.75e1
variant carriers: 441

GenotypeQuality
all individuals: 1713
bin: 5.75e1
variant carriers: 526

GenotypeQuality
all individuals: 2749
bin: 1.25e1
variant carriers: 614

GenotypeQuality
all individuals: 8155
bin: 9.75e1
variant carriers: 3698

European (Finnish)
type: Population
allele count: 535
allele frequency: 1.220346715328467e-1
allele num: 4384
num of homozygotes: 0

Latino
type: Population
allele count: 949
allele frequency: 1.461348937480751e-1
allele num: 6494
num of homozygotes: 0

African
type: Population
allele count: 1190
allele frequency: 1.960461285008237e-1
allele num: 6070
num of homozygotes: 1

South Asian
type: Population
allele count: 891
allele frequency: 1.469811943253052e-1
allele num: 6062
num of homozygotes: 0

East Asian
type: Population
allele count: 643
allele frequency: 1.296893908834207e-1
allele num: 4958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6914
allele frequency: 1.707835194150776e-1
allele num: 40484
num of homozygotes: 0

Other
type: Population
allele count: 74
allele frequency: 1.468253968253968e-1
allele num: 504
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.263e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.81e-1

FS
type: SiteQuality
SIO_000300: 1.114e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.3e-2

QD
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 2.318564e6

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

MQ
type: SiteQuality
SIO_000300: 5.874e1

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

GenotypeQuality
all individuals: 2783
bin: 2.25e1
variant carriers: 14

GenotypeQuality
all individuals: 17268
bin: 2.5e0
variant carriers: 16

GenotypeQuality
all individuals: 1675
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2749
bin: 1.25e1
variant carriers: 21

GenotypeQuality
all individuals: 2650
bin: 1.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1946
bin: 5.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1234
bin: 7.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2231
bin: 3.75e1
variant carriers: 16

GenotypeQuality
all individuals: 1713
bin: 5.75e1
variant carriers: 12

GenotypeQuality
all individuals: 2506
bin: 2.75e1
variant carriers: 16

GenotypeQuality
all individuals: 2348
bin: 3.25e1
variant carriers: 18

GenotypeQuality
all individuals: 3012
bin: 7.5e0
variant carriers: 18

GenotypeQuality
all individuals: 8155
bin: 9.75e1
variant carriers: 31

GenotypeQuality
all individuals: 979
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1019
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1364
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1151
bin: 8.25e1
variant carriers: 5

Latino
type: Population
allele count: 11
allele frequency: 1.6938712657838e-3
allele num: 6494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 1.368613138686131e-3
allele num: 4384
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 3.624382207578254e-3
allele num: 6070
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 1.411859620814845e-3
allele num: 4958
num of homozygotes: 0

South Asian
type: Population
allele count: 23
allele frequency: 3.794127350709337e-3
allele num: 6062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 93
allele frequency: 2.297203833613279e-3
allele num: 40484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.263e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.81e-1

DP
type: SiteQuality
SIO_000300: 2.318564e6

MQ
type: SiteQuality
SIO_000300: 5.874e1

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.3e-2

FS
type: SiteQuality
SIO_000300: 1.114e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

QD
type: SiteQuality
SIO_000300: 1.49e0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.235055824523268e-4
allele num: 40484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4384
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

FS
type: SiteQuality
SIO_000300: 1.114e0

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

QD
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 2.318564e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.263e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

MQ
type: SiteQuality
SIO_000300: 5.874e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.81e-1

GenotypeQuality
all individuals: 1364
bin: 7.25e1
variant carriers: 721

GenotypeQuality
all individuals: 3012
bin: 7.5e0
variant carriers: 1073

GenotypeQuality
all individuals: 2506
bin: 2.75e1
variant carriers: 1149

GenotypeQuality
all individuals: 1019
bin: 8.75e1
variant carriers: 561

GenotypeQuality
all individuals: 2165
bin: 4.25e1
variant carriers: 1094

GenotypeQuality
all individuals: 2231
bin: 3.75e1
variant carriers: 1138

GenotypeQuality
all individuals: 2749
bin: 1.25e1
variant carriers: 1098

GenotypeQuality
all individuals: 1713
bin: 5.75e1
variant carriers: 892

GenotypeQuality
all individuals: 2348
bin: 3.25e1
variant carriers: 1114

GenotypeQuality
all individuals: 1946
bin: 5.25e1
variant carriers: 971

GenotypeQuality
all individuals: 17268
bin: 2.5e0
variant carriers: 932

GenotypeQuality
all individuals: 1151
bin: 8.25e1
variant carriers: 591

GenotypeQuality
all individuals: 979
bin: 9.25e1
variant carriers: 494

GenotypeQuality
all individuals: 1675
bin: 6.25e1
variant carriers: 855

GenotypeQuality
all individuals: 8155
bin: 9.75e1
variant carriers: 4122

GenotypeQuality
all individuals: 2783
bin: 2.25e1
variant carriers: 1170

GenotypeQuality
all individuals: 2650
bin: 1.75e1
variant carriers: 1105

Latino
type: Population
allele count: 1445
allele frequency: 2.225130890052356e-1
allele num: 6494
num of homozygotes: 0

African
type: Population
allele count: 1224
allele frequency: 2.016474464579901e-1
allele num: 6070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1076
allele frequency: 2.454379562043796e-1
allele num: 4384
num of homozygotes: 0

East Asian
type: Population
allele count: 1413
allele frequency: 2.849939491730537e-1
allele num: 4958
num of homozygotes: 0

South Asian
type: Population
allele count: 1682
allele frequency: 2.774661827779611e-1
allele num: 6062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10281
allele frequency: 2.539521786384745e-1
allele num: 40484
num of homozygotes: 0

Other
type: Population
allele count: 141
allele frequency: 2.797619047619048e-1
allele num: 504
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

FS
type: SiteQuality
SIO_000300: 1.114e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.81e-1

DP
type: SiteQuality
SIO_000300: 2.318564e6

MQ
type: SiteQuality
SIO_000300: 5.874e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

QD
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.263e-1

GenotypeQuality
all individuals: 2749
bin: 1.25e1
variant carriers: 33

GenotypeQuality
all individuals: 2165
bin: 4.25e1
variant carriers: 19

GenotypeQuality
all individuals: 1529
bin: 6.75e1
variant carriers: 16

GenotypeQuality
all individuals: 2650
bin: 1.75e1
variant carriers: 30

GenotypeQuality
all individuals: 1234
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2783
bin: 2.25e1
variant carriers: 17

GenotypeQuality
all individuals: 1019
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2506
bin: 2.75e1
variant carriers: 28

GenotypeQuality
all individuals: 8155
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 1972
bin: 4.75e1
variant carriers: 23

GenotypeQuality
all individuals: 1151
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1713
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1675
bin: 6.25e1
variant carriers: 13

GenotypeQuality
all individuals: 2348
bin: 3.25e1
variant carriers: 21

GenotypeQuality
all individuals: 1946
bin: 5.25e1
variant carriers: 15

GenotypeQuality
all individuals: 1364
bin: 7.25e1
variant carriers: 10

GenotypeQuality
all individuals: 979
bin: 9.25e1
variant carriers: 2

South Asian
type: Population
allele count: 28
allele frequency: 4.618937644341801e-3
allele num: 6062
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 3.459637561779242e-3
allele num: 6070
num of homozygotes: 0

East Asian
type: Population
allele count: 22
allele frequency: 4.437273093989512e-3
allele num: 4958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 1.368613138686131e-3
allele num: 4384
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.968253968253968e-3
allele num: 504
num of homozygotes: 0

Latino
type: Population
allele count: 17
allele frequency: 2.617801047120419e-3
allele num: 6494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 123
allele frequency: 3.03823732832724e-3
allele num: 40484
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

QD
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 2.318564e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

MQ
type: SiteQuality
SIO_000300: 5.874e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.263e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

FS
type: SiteQuality
SIO_000300: 1.114e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4384
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.318564e6

MQ
type: SiteQuality
SIO_000300: 5.874e1

QD
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.263e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

FS
type: SiteQuality
SIO_000300: 1.114e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

GenotypeQuality
all individuals: 2036
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7822
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2097
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1936
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3094
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1672
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variant carriers: 0

GenotypeQuality
all individuals: 5313
bin: 6.75e1
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GenotypeQuality
all individuals: 418
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GenotypeQuality
all individuals: 2818
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variant carriers: 0

GenotypeQuality
all individuals: 704
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GenotypeQuality
all individuals: 14658
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4451
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1917
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536475938786798e-5
allele num: 65084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14966
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-2

MQ
type: SiteQuality
SIO_000300: 5.875e1

FS
type: SiteQuality
SIO_000300: 3.3755e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.058e0

VQSLOD
type: SiteQuality
SIO_000300: -3.926e0

DP
type: SiteQuality
SIO_000300: 3.072779e6

QD
type: SiteQuality
SIO_000300: 2.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

GenotypeQuality
all individuals: 1277
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3544
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variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
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variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10396
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
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variant carriers: 0

GenotypeQuality
all individuals: 4461
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variant carriers: 0

GenotypeQuality
all individuals: 347
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variant carriers: 0

GenotypeQuality
all individuals: 3140
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1782
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526857422053929e-5
allele num: 65494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.6e-2

MQ
type: SiteQuality
SIO_000300: 5.8e1

DP
type: SiteQuality
SIO_000300: 3.082123e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.356e0

VQSLOD
type: SiteQuality
SIO_000300: -3.538e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.187e0

QD
type: SiteQuality
SIO_000300: 1.661e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.73e0

GenotypeQuality
all individuals: 490
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2862
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.010305112143867e-4
allele num: 9898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e0

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

DP
type: SiteQuality
SIO_000300: 3.088833e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -6.616e0

QD
type: SiteQuality
SIO_000300: 1.045e1

FS
type: SiteQuality
SIO_000300: 8.957000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.16e0

MQ
type: SiteQuality
SIO_000300: 5.843e1

GenotypeQuality
all individuals: 516
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3991
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GenotypeQuality
all individuals: 4480
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519433555170632e-5
allele num: 65814
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.58e0

VQSLOD
type: SiteQuality
SIO_000300: -3.404e0

MQRankSum
type: SiteQuality
SIO_000300: -1.188e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.374e0

FS
type: SiteQuality
SIO_000300: 1.7885e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

DP
type: SiteQuality
SIO_000300: 3.096194e6

GenotypeQuality
all individuals: 243
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4366
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 2.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6138
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variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.830801836806782e-5
allele num: 11324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.026634382566586e-4
allele num: 9912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65454
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.277955271565495e-4
allele num: 15650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.522997258604935e-4
allele num: 6566
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.554e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.362e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.597e0

DP
type: SiteQuality
SIO_000300: 3.130636e6

MQRankSum
type: SiteQuality
SIO_000300: -1.64e-1

MQ
type: SiteQuality
SIO_000300: 5.888e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.08e-1

QD
type: SiteQuality
SIO_000300: 9.5e-1

GenotypeQuality
all individuals: 427
bin: 4.25e1
variant carriers: 20

GenotypeQuality
all individuals: 2120
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 285
bin: 1.25e1
variant carriers: 19

GenotypeQuality
all individuals: 6138
bin: 6.75e1
variant carriers: 11

GenotypeQuality
all individuals: 15209
bin: 9.75e1
variant carriers: 81

GenotypeQuality
all individuals: 3154
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 309
bin: 5.25e1
variant carriers: 14

GenotypeQuality
all individuals: 408
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variant carriers: 17

GenotypeQuality
all individuals: 303
bin: 2.5e0
variant carriers: 35

GenotypeQuality
all individuals: 12857
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 243
bin: 1.75e1
variant carriers: 33

GenotypeQuality
all individuals: 1425
bin: 3.25e1
variant carriers: 19

GenotypeQuality
all individuals: 3640
bin: 2.25e1
variant carriers: 26

GenotypeQuality
all individuals: 1199
bin: 2.75e1
variant carriers: 20

GenotypeQuality
all individuals: 547
bin: 7.5e0
variant carriers: 39

GenotypeQuality
all individuals: 2869
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 3882
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 311
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 971
bin: 3.75e1
variant carriers: 18

GenotypeQuality
all individuals: 4366
bin: 7.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 11
allele frequency: 1.675296984465428e-3
allele num: 6566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 154
allele frequency: 2.352797384422648e-3
allele num: 65454
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.262443438914027e-3
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 28
allele frequency: 2.824858757062147e-3
allele num: 9912
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.059696220416814e-3
allele num: 11324
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.722550177095632e-4
allele num: 8470
num of homozygotes: 0

South Asian
type: Population
allele count: 53
allele frequency: 3.386581469648562e-3
allele num: 15650
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.597e0

MQ
type: SiteQuality
SIO_000300: 5.888e1

VQSLOD
type: SiteQuality
SIO_000300: -4.362e0

DP
type: SiteQuality
SIO_000300: 3.130636e6

FS
type: SiteQuality
SIO_000300: 3.554e1

QD
type: SiteQuality
SIO_000300: 9.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

GenotypeQuality
all individuals: 559
bin: 4.75e1
variant carriers: 175

GenotypeQuality
all individuals: 641
bin: 1.75e1
variant carriers: 114

GenotypeQuality
all individuals: 1530
bin: 6.25e1
variant carriers: 160

GenotypeQuality
all individuals: 350
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variant carriers: 240

GenotypeQuality
all individuals: 671
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variant carriers: 111

GenotypeQuality
all individuals: 575
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variant carriers: 142

GenotypeQuality
all individuals: 758
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GenotypeQuality
all individuals: 307
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variant carriers: 203

GenotypeQuality
all individuals: 410
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variant carriers: 194

GenotypeQuality
all individuals: 788
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variant carriers: 132

GenotypeQuality
all individuals: 456
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variant carriers: 183

GenotypeQuality
all individuals: 549
bin: 4.25e1
variant carriers: 162

GenotypeQuality
all individuals: 666
bin: 2.75e1
variant carriers: 154

GenotypeQuality
all individuals: 527
bin: 5.75e1
variant carriers: 192

GenotypeQuality
all individuals: 409
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variant carriers: 224

GenotypeQuality
all individuals: 593
bin: 3.25e1
variant carriers: 134

GenotypeQuality
all individuals: 734
bin: 6.75e1
variant carriers: 210

European (Non-Finnish)
type: Population
allele count: 8517
allele frequency: 3.067420586328604e-1
allele num: 27766
num of homozygotes: 0

African
type: Population
allele count: 1613
allele frequency: 4.071176173649672e-1
allele num: 3962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1207
allele frequency: 4.036789297658863e-1
allele num: 2990
num of homozygotes: 0

Latino
type: Population
allele count: 2471
allele frequency: 4.726472838561591e-1
allele num: 5228
num of homozygotes: 0

South Asian
type: Population
allele count: 2187
allele frequency: 4.739921976592978e-1
allele num: 4614
num of homozygotes: 0

Other
type: Population
allele count: 120
allele frequency: 3.773584905660378e-1
allele num: 318
num of homozygotes: 0

East Asian
type: Population
allele count: 1461
allele frequency: 4.317375886524823e-1
allele num: 3384
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.5062e1

VQSLOD
type: SiteQuality
SIO_000300: 3.834e1

DP
type: SiteQuality
SIO_000300: 3.021209e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.245e0

MQ
type: SiteQuality
SIO_000300: 5.836e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.158e-1

QD
type: SiteQuality
SIO_000300: 3.4e0

GenotypeQuality
all individuals: 1311
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1463
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2385
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GenotypeQuality
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GenotypeQuality
all individuals: 16593
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 783
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5749
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.604106512672441e-4
allele num: 6234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.199832812706234e-5
allele num: 45458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5262
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.845e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.59e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-1

QD
type: SiteQuality
SIO_000300: 3.24e0

FS
type: SiteQuality
SIO_000300: 5.5543e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.959e0

DP
type: SiteQuality
SIO_000300: 2.936761e6

VQSLOD
type: SiteQuality
SIO_000300: -3.057e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.389e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.63e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1024
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5749
bin: 6.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.199832812706234e-5
allele num: 45458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5262
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.508295625942685e-4
allele num: 6630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.5543e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.63e0

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.959e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.59e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.057e0

DP
type: SiteQuality
SIO_000300: 2.936761e6

MQ
type: SiteQuality
SIO_000300: 5.845e1

QD
type: SiteQuality
SIO_000300: 3.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.389e0

GenotypeQuality
all individuals: 1078
bin: 4.75e1
variant carriers: 157

GenotypeQuality
all individuals: 2385
bin: 6.75e1
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GenotypeQuality
all individuals: 921
bin: 7.25e1
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GenotypeQuality
all individuals: 5749
bin: 6.25e1
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GenotypeQuality
all individuals: 574
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variant carriers: 206

GenotypeQuality
all individuals: 1161
bin: 4.25e1
variant carriers: 159

GenotypeQuality
all individuals: 1463
bin: 2.25e1
variant carriers: 135

GenotypeQuality
all individuals: 1024
bin: 5.25e1
variant carriers: 144

GenotypeQuality
all individuals: 1134
bin: 7.75e1
variant carriers: 169

GenotypeQuality
all individuals: 1226
bin: 2.75e1
variant carriers: 138

GenotypeQuality
all individuals: 1170
bin: 3.75e1
variant carriers: 143

GenotypeQuality
all individuals: 1311
bin: 7.5e0
variant carriers: 122

GenotypeQuality
all individuals: 902
bin: 5.75e1
variant carriers: 155

GenotypeQuality
all individuals: 15792
bin: 2.5e0
variant carriers: 111

GenotypeQuality
all individuals: 1337
bin: 1.75e1
variant carriers: 117

GenotypeQuality
all individuals: 1302
bin: 3.25e1
variant carriers: 116

GenotypeQuality
all individuals: 527
bin: 8.75e1
variant carriers: 190

GenotypeQuality
all individuals: 16593
bin: 9.75e1
variant carriers: 15043

GenotypeQuality
all individuals: 783
bin: 8.25e1
variant carriers: 184

GenotypeQuality
all individuals: 1326
bin: 1.25e1
variant carriers: 119

European (Non-Finnish)
type: Population
allele count: 8418
allele frequency: 1.851819261736108e-1
allele num: 45458
num of homozygotes: 0

African
type: Population
allele count: 1667
allele frequency: 2.67404555662496e-1
allele num: 6234
num of homozygotes: 0

East Asian
type: Population
allele count: 1485
allele frequency: 2.82212086659065e-1
allele num: 5262
num of homozygotes: 0

Other
type: Population
allele count: 122
allele frequency: 2.194244604316547e-1
allele num: 556
num of homozygotes: 0

South Asian
type: Population
allele count: 2209
allele frequency: 3.33182503770739e-1
allele num: 6630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1139
allele frequency: 2.599269739844819e-1
allele num: 4382
num of homozygotes: 0

Latino
type: Population
allele count: 2389
allele frequency: 3.307947936859595e-1
allele num: 7222
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-1

MQ
type: SiteQuality
SIO_000300: 5.845e1

VQSLOD
type: SiteQuality
SIO_000300: -3.057e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.63e0

DP
type: SiteQuality
SIO_000300: 2.936761e6

FS
type: SiteQuality
SIO_000300: 5.5543e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.959e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.389e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.59e-2

QD
type: SiteQuality
SIO_000300: 3.24e0