4-99341156-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341156
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341156
    reference: chr 4
allele count: 12789
allele frequency: 1.062862556720908e-1
allele num: 120326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1028-14C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.902-14C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1178-14C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1175-14C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1178-14C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.603-14C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1031-14C>G
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 3.25e1
  variant carriers: 263
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 7.25e1
  variant carriers: 833
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 3.75e1
  variant carriers: 271
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 5.75e1
  variant carriers: 581
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 4.25e1
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 9.25e1
  variant carriers: 624
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 6.25e1
  variant carriers: 633
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 752
genotype depth: GenotypeDepth
  all individuals: 4079
  bin: 2.25e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 6.75e1
  variant carriers: 740
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 7.75e1
  variant carriers: 800
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 9.75e1
  variant carriers: 3983
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 2.75e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 4.75e1
  variant carriers: 385
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 8.75e1
  variant carriers: 643
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 5.25e1
  variant carriers: 477
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 9183
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3172
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 34168
  bin: 9.75e1
  variant carriers: 11720
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3159
  bin: 8.25e1
  variant carriers: 11
num of homozygotes: 1014
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

4-99341157-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341157
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341157
    reference: chr 4
allele count: 5
allele frequency: 4.153444867172833e-5
allele num: 120382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1175-13T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1028-13T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1178-13T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1178-13T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.902-13T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1031-13T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.603-13T>C
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4266
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28235
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

4-99341160-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341160
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341160
    reference: chr 4
allele count: 1
allele frequency: 8.303716743614441e-6
allele num: 120428
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.603-10T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1028-10T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1178-10T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1175-10T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1031-10T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1178-10T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.902-10T>C
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7451
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

4-99341165-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341165
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341165
    reference: chr 4
allele count: 1
allele frequency: 8.298617450332775e-6
allele num: 120502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1178-5T>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1031-5T>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.902-5T>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1028-5T>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1178-5T>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.603-5T>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1175-5T>A
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3928
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1178-5T>A
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

4-99341165-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341165
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341165
    reference: chr 4
allele count: 3
allele frequency: 2.489585235099832e-5
allele num: 120502
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1178-5T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.603-5T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1028-5T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1031-5T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.902-5T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1178-5T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1175-5T>C
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11531
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1178-5T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-99341166-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341166
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341166
    reference: chr 4
allele count: 4
allele frequency: 3.319006289516919e-5
allele num: 120518
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1178-4C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1031-4C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1028-4C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.603-4C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1175-4C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1178-4C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.902-4C>T
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28235
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4261
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1178-4C>T
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD

4-99341173-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341173
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341173
    reference: chr 4
allele count: 3
allele frequency: 2.487355940635105e-5
allele num: 120610
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1181T>C
  hgvsp: ENSP00000340454.5:p.Ile394Thr
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.606T>C
  hgvsp: ENSP00000421482.1:p.Ile203Thr
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1031T>C
  hgvsp: ENSP00000386223.3:p.Ile344Thr
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.905T>C
  hgvsp: ENSP00000264572.7:p.Ile302Thr
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1034T>C
  hgvsp: ENSP00000369503.4:p.Ile345Thr
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1178T>C
  hgvsp: ENSP00000386153.3:p.Ile393Thr
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1181T>C
  hgvsp: ENSP00000407157.2:p.Ile394Thr
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7133
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7774
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3909
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile394Thr
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

4-99341184-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341184
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341184
    reference: chr 4
allele count: 1
allele frequency: 8.288849839196314e-6
allele num: 120644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.916A>G
  hgvsp: ENSP00000264572.7:p.Lys306Glu
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1042A>G
  hgvsp: ENSP00000386223.3:p.Lys348Glu
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1192A>G
  hgvsp: ENSP00000407157.2:p.Lys398Glu
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1192A>G
  hgvsp: ENSP00000340454.5:p.Lys398Glu
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1045A>G
  hgvsp: ENSP00000369503.4:p.Lys349Glu
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1189A>G
  hgvsp: ENSP00000386153.3:p.Lys397Glu
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.617A>G
  hgvsp: ENSP00000421482.1:p.Lys207Glu
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2054
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys398Glu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

4-99341185-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341185
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341185
    reference: chr 4
allele count: 1
allele frequency: 8.288437629506838e-6
allele num: 120650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1193A>T
  hgvsp: ENSP00000407157.2:p.Lys398Met
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1193A>T
  hgvsp: ENSP00000340454.5:p.Lys398Met
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1046A>T
  hgvsp: ENSP00000369503.4:p.Lys349Met
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1043A>T
  hgvsp: ENSP00000386223.3:p.Lys348Met
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1190A>T
  hgvsp: ENSP00000386153.3:p.Lys397Met
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.917A>T
  hgvsp: ENSP00000264572.7:p.Lys306Met
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.618A>T
  hgvsp: ENSP00000421482.1:p.Lys207Met
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6756
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3906
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2054
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys398Met
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

4-99341192-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341192
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341192
    reference: chr 4
allele count: 1
allele frequency: 8.287613333112331e-6
allele num: 120662
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.625A>T
  hgvsp: ENSP00000421482.1:p.Leu209Phe
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1200A>T
  hgvsp: ENSP00000407157.2:p.Leu400Phe
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1200A>T
  hgvsp: ENSP00000340454.5:p.Leu400Phe
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1050A>T
  hgvsp: ENSP00000386223.3:p.Leu350Phe
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1197A>T
  hgvsp: ENSP00000386153.3:p.Leu399Phe
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.924A>T
  hgvsp: ENSP00000264572.7:p.Leu308Phe
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1053A>T
  hgvsp: ENSP00000369503.4:p.Leu351Phe
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3923
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11816
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu400Phe
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum

4-99341200-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341200
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341200
    reference: chr 4
allele count: 2
allele frequency: 1.657522666622466e-5
allele num: 120662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1061G>A
  hgvsp: ENSP00000369503.4:p.Gly354Glu
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.633G>A
  hgvsp: ENSP00000421482.1:p.Gly212Glu
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.932G>A
  hgvsp: ENSP00000264572.7:p.Gly311Glu
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1205G>A
  hgvsp: ENSP00000386153.3:p.Gly402Glu
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1208G>A
  hgvsp: ENSP00000407157.2:p.Gly403Glu
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1208G>A
  hgvsp: ENSP00000340454.5:p.Gly403Glu
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1058G>A
  hgvsp: ENSP00000386223.3:p.Gly353Glu
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4282
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3922
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28226
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly403Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

4-99341201-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341201
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341201
    reference: chr 4
allele count: 3
allele frequency: 2.486036760196894e-5
allele num: 120674
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.634G>A
  hgvsp: ENST00000509501.1:c.634G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1209G>A
  hgvsp: ENST00000453712.2:c.1209G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1059G>A
  hgvsp: ENST00000408900.3:c.1059G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1206G>A
  hgvsp: ENST00000408927.3:c.1206G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.933G>A
  hgvsp: ENST00000264572.7:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1209G>A
  hgvsp: ENST00000339360.5:c.1209G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1062G>A
  hgvsp: ENST00000380158.4:c.1062G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7673
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3920
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3899
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28225
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11817
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly403Gly
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

4-99341223-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341223
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341223
    reference: chr 4
allele count: 1
allele frequency: 8.289399515899069e-6
allele num: 120636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.955T>A
  hgvsp: ENSP00000264572.7:p.Phe319Ile
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1231T>A
  hgvsp: ENSP00000407157.2:p.Phe411Ile
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1081T>A
  hgvsp: ENSP00000386223.3:p.Phe361Ile
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.656T>A
  hgvsp: ENSP00000421482.1:p.Phe220Ile
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1231T>A
  hgvsp: ENSP00000340454.5:p.Phe411Ile
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1084T>A
  hgvsp: ENSP00000369503.4:p.Phe362Ile
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1228T>A
  hgvsp: ENSP00000386153.3:p.Phe410Ile
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4270
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3887
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Phe411Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

4-99341236-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341236
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341236
    reference: chr 4
allele count: 1
allele frequency: 8.286926544683108e-6
allele num: 120672
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1244A>G
  hgvsp: ENSP00000407157.2:p.Glu415Gly
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1097A>G
  hgvsp: ENSP00000369503.4:p.Glu366Gly
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.669A>G
  hgvsp: ENSP00000421482.1:p.Glu224Gly
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1241A>G
  hgvsp: ENSP00000386153.3:p.Glu414Gly
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.968A>G
  hgvsp: ENSP00000264572.7:p.Glu323Gly
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1094A>G
  hgvsp: ENSP00000386223.3:p.Glu365Gly
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1244A>G
  hgvsp: ENSP00000340454.5:p.Glu415Gly
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7178
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6748
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3883
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11874
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3918
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu415Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-99341239-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341239
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341239
    reference: chr 4
allele count: 1
allele frequency: 8.287063893262618e-6
allele num: 120670
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1100T>G
  hgvsp: ENSP00000369503.4:p.Met367Arg
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1097T>G
  hgvsp: ENSP00000386223.3:p.Met366Arg
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1247T>G
  hgvsp: ENSP00000340454.5:p.Met416Arg
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.672T>G
  hgvsp: ENSP00000421482.1:p.Met225Arg
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.971T>G
  hgvsp: ENSP00000264572.7:p.Met324Arg
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1244T>G
  hgvsp: ENSP00000386153.3:p.Met415Arg
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1247T>G
  hgvsp: ENSP00000407157.2:p.Met416Arg
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11893
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3917
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met416Arg
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD

4-99341240-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341240
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341240
    reference: chr 4
allele count: 1
allele frequency: 8.287338604080686e-6
allele num: 120666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1101G>T
  hgvsp: ENSP00000369503.4:p.Met367Ile
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.972G>T
  hgvsp: ENSP00000264572.7:p.Met324Ile
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1098G>T
  hgvsp: ENSP00000386223.3:p.Met366Ile
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.673G>T
  hgvsp: ENSP00000421482.1:p.Met225Ile
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1248G>T
  hgvsp: ENSP00000407157.2:p.Met416Ile
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1248G>T
  hgvsp: ENSP00000340454.5:p.Met416Ile
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1245G>T
  hgvsp: ENSP00000386153.3:p.Met415Ile
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6748
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28211
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3903
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3914
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met416Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

4-99341262-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341262
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341262
    reference: chr 4
allele count: 1
allele frequency: 8.288437629506838e-6
allele num: 120650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.695C>T
  hgvsp: ENST00000509501.1:c.695C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1270C>T
  hgvsp: ENST00000339360.5:c.1270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1120C>T
  hgvsp: ENST00000408900.3:c.1120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1270C>T
  hgvsp: ENST00000453712.2:c.1270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1267C>T
  hgvsp: ENST00000408927.3:c.1267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.994C>T
  hgvsp: ENST00000264572.7:c.994C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1123C>T
  hgvsp: ENST00000380158.4:c.1123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11908
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28208
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3883
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3901
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu424Leu
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

4-99341279-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341279
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341279
    reference: chr 4
allele count: 1
allele frequency: 8.295588406085643e-6
allele num: 120546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1287G>T
  hgvsp: ENSP00000407157.2:p.Met429Ile
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1011G>T
  hgvsp: ENSP00000264572.7:p.Met337Ile
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1287G>T
  hgvsp: ENSP00000340454.5:p.Met429Ile
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.712G>T
  hgvsp: ENSP00000421482.1:p.Met238Ile
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1284G>T
  hgvsp: ENSP00000386153.3:p.Met428Ile
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1137G>T
  hgvsp: ENSP00000386223.3:p.Met379Ile
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1140G>T
  hgvsp: ENSP00000369503.4:p.Met380Ile
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28202
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met429Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

4-99341280-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341280
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341280
    reference: chr 4
allele count: 1
allele frequency: 8.296001327360212e-6
allele num: 120540
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1288T>C
  hgvsp: ENST00000339360.5:c.1288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1285T>C
  hgvsp: ENST00000408927.3:c.1285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1141T>C
  hgvsp: ENST00000380158.4:c.1141T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.713T>C
  hgvsp: ENST00000509501.1:c.713T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1288T>C
  hgvsp: ENST00000453712.2:c.1288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1012T>C
  hgvsp: ENST00000264572.7:c.1012T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1138T>C
  hgvsp: ENST00000408900.3:c.1138T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3907
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4240
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu430Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

4-99341297-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341297
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341297
    reference: chr 4
allele count: 1
allele frequency: 8.31766839119658e-6
allele num: 120226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1027+2T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1303+2T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1300+2T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1156+2T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.728+2T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1303+2T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1153+2T>C
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: splice donor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28199
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11060
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3903
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1303+2T>C
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

4-99341302-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341302
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341301
    reference: chr 4
allele count: 1
allele frequency: 8.32514693884347e-6
allele num: 120118
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1153+10delA
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1156+10delA
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1027+10delA
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1303+10delA
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1303+10delA
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1300+10delA
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.728+10delA
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7309
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6745
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28198
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2066
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10710
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4145
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1303+10delA
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GA
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

4-99341311-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341311
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341311
    reference: chr 4
allele count: 1
allele frequency: 8.340005337603416e-6
allele num: 119904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.728+16T>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1153+16T>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1300+16T>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1303+16T>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1156+16T>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1027+16T>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1303+16T>A
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6744
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4032
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9764
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

4-99341314-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341314
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341314
    reference: chr 4
allele count: 1
allele frequency: 8.34640937468701e-6
allele num: 119812
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1156+19C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.728+19C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1027+19C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1303+19C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1303+19C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1300+19C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1153+19C>G
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7705
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3829
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD

4-99341315-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341315
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341315
    reference: chr 4
allele count: 1
allele frequency: 8.349336227769892e-6
allele num: 119770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1300+20C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1303+20C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1156+20C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1303+20C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.728+20C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1027+20C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1153+20C>T
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6742
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28187
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9229
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3892
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3823
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3956
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

4-99341321-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341321
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341321
    reference: chr 4
allele count: 1
allele frequency: 8.357151214294072e-6
allele num: 119658
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1303+26G>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.728+26G>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1027+26G>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1156+26G>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1153+26G>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1300+26G>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1303+26G>A
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6739
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3890
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3871
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3803
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

4-99341323-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341323
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341323
    reference: chr 4
allele count: 3
allele frequency: 2.508277315139962e-5
allele num: 119604
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1303+28A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.728+28A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1153+28A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1156+28A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1300+28A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1027+28A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1303+28A>G
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8114
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

4-99341330-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341330
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341330
    reference: chr 4
allele count: 95
allele frequency: 7.950056905670483e-4
allele num: 119496
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1300+35A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1303+35A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1153+35A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1027+35A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1156+35A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.728+35A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1303+35A>G
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7621
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7660
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6739
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6832
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3771
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3854
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3889
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3768
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7485
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

4-99341332-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341332
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341331
    reference: chr 4
allele count: 6
allele frequency: 5.022938083916552e-5
allele num: 119452
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1303+38delT
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1300+38delT
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1303+38delT
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1027+38delT
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1153+38delT
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.728+38delT
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1156+38delT
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6737
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7623
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7659
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3894
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3742
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3753
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: AT
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/4-99341343-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99341343
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99341343
    reference: chr 4
allele count: 1
allele frequency: 8.398138972403716e-6
allele num: 119074
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.728+48A>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1300+48A>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1303+48A>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1027+48A>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1153+48A>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1156+48A>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1303+48A>C
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6733
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3521
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3892
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3818
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

4-99342361-TTGTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342361
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342357
    reference: chr 4
allele count: 1
allele frequency: 8.736829229935872e-6
allele num: 114458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1028-41_1028-38delCTGT
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1304-44_1304-41delCTGT
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1154-41_1154-38delCTGT
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1304-41_1304-38delCTGT
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1157-41_1157-38delCTGT
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1301-41_1301-38delCTGT
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.729-41_729-38delCTGT
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8727
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: TTGTC
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-99342363-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342363
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342363
    reference: chr 4
allele count: 1
allele frequency: 8.735455466648032e-6
allele num: 114476
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1301-43G>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1028-43G>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1304-43G>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1154-43G>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1304-46G>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.729-43G>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1157-43G>A
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2888
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

4-99342366-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342366
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342366
    reference: chr 4
allele count: 8
allele frequency: 6.981046458864183e-5
allele num: 114596
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1154-40T>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1028-40T>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1301-40T>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1304-43T>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1157-40T>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1304-40T>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.729-40T>G
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

4-99342367-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342367
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342367
    reference: chr 4
allele count: 2
allele frequency: 1.745474856434693e-5
allele num: 114582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1157-39G>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1301-39G>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1028-39G>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1304-39G>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1304-42G>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.729-39G>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1154-39G>C
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39796
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

4-99342377-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342377
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342377
    reference: chr 4
allele count: 1
allele frequency: 8.711408460519897e-6
allele num: 114792
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1157-29C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1304-32C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.729-29C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1154-29C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1028-29C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1301-29C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1304-29C>T
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2875
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

4-99342386-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342386
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342386
    reference: chr 4
allele count: 1
allele frequency: 8.673929637082785e-6
allele num: 115288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1028-20G>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1304-23G>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.729-20G>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1157-20G>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1154-20G>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1301-20G>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1304-20G>A
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2545
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6723
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40564
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

4-99342392-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342392
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342392
    reference: chr 4
allele count: 1
allele frequency: 8.64274355251331e-6
allele num: 115704
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1301-14C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1304-17C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1154-14C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1304-14C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.729-14C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1028-14C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1157-14C>G
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

4-99342392-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342392
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342392
    reference: chr 4
allele count: 1
allele frequency: 8.64274355251331e-6
allele num: 115704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1304-17C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1301-14C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1157-14C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.729-14C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1304-14C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1028-14C>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1154-14C>T
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6738
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40874
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

4-99342401-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342401
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342401
    reference: chr 4
allele count: 1
allele frequency: 8.566631257924135e-6
allele num: 116732
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1304-5T>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.729-5T>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1028-5T>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1157-5T>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1154-5T>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1304-8T>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1301-5T>G
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6775
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1304-5T>G
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

4-99342416-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342416
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342416
    reference: chr 4
allele count: 1
allele frequency: 8.410711882653748e-6
allele num: 118896
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.739T>C
  hgvsp: ENST00000509501.1:c.739T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1314T>C
  hgvsp: ENST00000339360.5:c.1314T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1038T>C
  hgvsp: ENST00000264572.7:c.1038T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1164T>C
  hgvsp: ENST00000408900.3:c.1164T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1311T>C
  hgvsp: ENST00000453712.2:c.1311T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1311T>C
  hgvsp: ENST00000408927.3:c.1311T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1167T>C
  hgvsp: ENST00000380158.4:c.1167T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1751
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala438Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-99342423-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342423
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342423
    reference: chr 4
allele count: 9
allele frequency: 7.519425181719441e-5
allele num: 119690
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1318T>C
  hgvsp: ENST00000408927.3:c.1318T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1171T>C
  hgvsp: ENST00000408900.3:c.1171T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1318T>C
  hgvsp: ENST00000453712.2:c.1318T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1321T>C
  hgvsp: ENST00000339360.5:c.1321T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000421482
  ensembl transcript: ENST00000509501
  gene symbol: RAP1GDS1
  hgvsc: ENST00000509501.1:c.746T>C
  hgvsp: ENST00000509501.1:c.746T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1045T>C
  hgvsp: ENST00000264572.7:c.1045T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1174T>C
  hgvsp: ENST00000380158.4:c.1174T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8812
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6905
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu441Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

4-99342441-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342441
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342441
    reference: chr 4
allele count: 1
allele frequency: 8.300546175938376e-6
allele num: 120474
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1339T>C
  hgvsp: ENST00000339360.5:c.1339T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1336T>C
  hgvsp: ENST00000453712.2:c.1336T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1336T>C
  hgvsp: ENST00000408927.3:c.1336T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1192T>C
  hgvsp: ENST00000380158.4:c.1192T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1189T>C
  hgvsp: ENST00000408900.3:c.1189T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1063T>C
  hgvsp: ENST00000264572.7:c.1063T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8861
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44822
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2858
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu447Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

4-99342441-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342441
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342441
    reference: chr 4
allele count: 1
allele frequency: 8.300546175938376e-6
allele num: 120474
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1189T>G
  hgvsp: ENSP00000386223.3:p.Leu397Val
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1336T>G
  hgvsp: ENSP00000407157.2:p.Leu446Val
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1192T>G
  hgvsp: ENSP00000369503.4:p.Leu398Val
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1063T>G
  hgvsp: ENSP00000264572.7:p.Leu355Val
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1339T>G
  hgvsp: ENSP00000340454.5:p.Leu447Val
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1336T>G
  hgvsp: ENSP00000386153.3:p.Leu446Val
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8861
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44822
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu447Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD

4-99342450-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342450
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342450
    reference: chr 4
allele count: 2
allele frequency: 1.658457303016734e-5
allele num: 120594
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1198C>T
  hgvsp: ENSP00000386223.3:p.Arg400Cys
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1072C>T
  hgvsp: ENSP00000264572.7:p.Arg358Cys
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1201C>T
  hgvsp: ENSP00000369503.4:p.Arg401Cys
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1345C>T
  hgvsp: ENSP00000407157.2:p.Arg449Cys
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1348C>T
  hgvsp: ENSP00000340454.5:p.Arg450Cys
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1345C>T
  hgvsp: ENSP00000386153.3:p.Arg449Cys
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg450Cys
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

4-99342451-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342451
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342451
    reference: chr 4
allele count: 14
allele frequency: 1.160708363732838e-4
allele num: 120616
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1202G>A
  hgvsp: ENSP00000369503.4:p.Arg401His
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1346G>A
  hgvsp: ENSP00000407157.2:p.Arg449His
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1346G>A
  hgvsp: ENSP00000386153.3:p.Arg449His
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1199G>A
  hgvsp: ENSP00000386223.3:p.Arg400His
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1073G>A
  hgvsp: ENSP00000264572.7:p.Arg358His
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1349G>A
  hgvsp: ENSP00000340454.5:p.Arg450His
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8877
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6950
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg450His
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

4-99342464-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342464
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342464
    reference: chr 4
allele count: 4
allele frequency: 3.315045333244932e-5
allele num: 120662
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1362G>T
  hgvsp: ENSP00000340454.5:p.Trp454Cys
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1212G>T
  hgvsp: ENSP00000386223.3:p.Trp404Cys
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1359G>T
  hgvsp: ENSP00000386153.3:p.Trp453Cys
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1359G>T
  hgvsp: ENSP00000407157.2:p.Trp453Cys
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1215G>T
  hgvsp: ENSP00000369503.4:p.Trp405Cys
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1086G>T
  hgvsp: ENSP00000264572.7:p.Trp362Cys
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Trp454Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-99342466-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342466
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342466
    reference: chr 4
allele count: 1
allele frequency: 8.287613333112331e-6
allele num: 120662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1217G>A
  hgvsp: ENSP00000369503.4:p.Cys406Tyr
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1361G>A
  hgvsp: ENSP00000407157.2:p.Cys454Tyr
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1361G>A
  hgvsp: ENSP00000386153.3:p.Cys454Tyr
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1364G>A
  hgvsp: ENSP00000340454.5:p.Cys455Tyr
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1088G>A
  hgvsp: ENSP00000264572.7:p.Cys363Tyr
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1214G>A
  hgvsp: ENSP00000386223.3:p.Cys405Tyr
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8874
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Cys455Tyr
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

4-99342501-TCAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342501
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342497
    reference: chr 4
allele count: 1
allele frequency: 8.307165761185599e-6
allele num: 120378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1399_1402delAACA
  hgvsp: ENSP00000386153.3:p.Asn467AspfsTer15
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1399_1402delAACA
  hgvsp: ENSP00000407157.2:p.Asn467AspfsTer15
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1252_1255delAACA
  hgvsp: ENSP00000386223.3:p.Asn418AspfsTer15
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1402_1405delAACA
  hgvsp: ENSP00000340454.5:p.Asn468AspfsTer15
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1255_1258delAACA
  hgvsp: ENSP00000369503.4:p.Asn419AspfsTer15
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1126_1129delAACA
  hgvsp: ENSP00000264572.7:p.Asn376AspfsTer15
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn468AspfsTer15
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
reference allele: TCAAA
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

4-99342506-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342506
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342506
    reference: chr 4
allele count: 22
allele frequency: 1.829734854785588e-4
allele num: 120236
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1401C>G
  hgvsp: ENSP00000407157.2:p.Asn467Lys
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1257C>G
  hgvsp: ENSP00000369503.4:p.Asn419Lys
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1401C>G
  hgvsp: ENSP00000386153.3:p.Asn467Lys
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1128C>G
  hgvsp: ENSP00000264572.7:p.Asn376Lys
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1254C>G
  hgvsp: ENSP00000386223.3:p.Asn418Lys
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1404C>G
  hgvsp: ENSP00000340454.5:p.Asn468Lys
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8710
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6741
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn468Lys
num of homozygotes: 1
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

4-99342513-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342513
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342513
    reference: chr 4
allele count: 5
allele frequency: 4.18025248725023e-5
allele num: 119610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1408C>T
  hgvsp: ENST00000408927.3:c.1408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1135C>T
  hgvsp: ENST00000264572.7:c.1135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1408C>T
  hgvsp: ENST00000453712.2:c.1408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1261C>T
  hgvsp: ENST00000408900.3:c.1261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1411C>T
  hgvsp: ENST00000339360.5:c.1411C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1264C>T
  hgvsp: ENST00000380158.4:c.1264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29638
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44080
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu471Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

4-99342515-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342515
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342515
    reference: chr 4
allele count: 1
allele frequency: 8.370302167908262e-6
allele num: 119470
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1413G>C
  hgvsp: ENST00000339360.5:c.1413G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1410G>C
  hgvsp: ENST00000408927.3:c.1410G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1266G>C
  hgvsp: ENST00000380158.4:c.1266G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1137G>C
  hgvsp: ENST00000264572.7:c.1137G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1410G>C
  hgvsp: ENST00000453712.2:c.1410G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1263G>C
  hgvsp: ENST00000408900.3:c.1263G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16071
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6588
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44009
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu471Leu
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

4-99342523-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342523
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342523
    reference: chr 4
allele count: 1
allele frequency: 8.47371453750466e-6
allele num: 118012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1418T>A
  hgvsp: ENSP00000386153.3:p.Leu473His
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1271T>A
  hgvsp: ENSP00000386223.3:p.Leu424His
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1274T>A
  hgvsp: ENSP00000369503.4:p.Leu425His
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1145T>A
  hgvsp: ENSP00000264572.7:p.Leu382His
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1421T>A
  hgvsp: ENSP00000340454.5:p.Leu474His
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1418T>A
  hgvsp: ENSP00000407157.2:p.Leu473His
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2463
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42640
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6262
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2723
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu474His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

4-99342528-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342528
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342528
    reference: chr 4
allele count: 1
allele frequency: 8.571330613364419e-6
allele num: 116668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1276C>T
  hgvsp: ENSP00000386223.3:p.Arg426Ter
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1279C>T
  hgvsp: ENSP00000369503.4:p.Arg427Ter
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1423C>T
  hgvsp: ENSP00000407157.2:p.Arg475Ter
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1423C>T
  hgvsp: ENSP00000386153.3:p.Arg475Ter
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1426C>T
  hgvsp: ENSP00000340454.5:p.Arg476Ter
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1150C>T
  hgvsp: ENSP00000264572.7:p.Arg384Ter
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg476Ter
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP

4-99342529-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342529
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342529
    reference: chr 4
allele count: 2
allele frequency: 1.718006425344031e-5
allele num: 116414
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1151G>A
  hgvsp: ENSP00000264572.7:p.Arg384Gln
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1424G>A
  hgvsp: ENSP00000386153.3:p.Arg475Gln
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1424G>A
  hgvsp: ENSP00000407157.2:p.Arg475Gln
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1280G>A
  hgvsp: ENSP00000369503.4:p.Arg427Gln
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1427G>A
  hgvsp: ENSP00000340454.5:p.Arg476Gln
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1277G>A
  hgvsp: ENSP00000386223.3:p.Arg426Gln
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28004
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40831
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg476Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

4-99342542-A-AGTTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342542
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342546
    reference: chr 4
allele count: 1
allele frequency: 8.914403893811621e-6
allele num: 112178
alternate allele: AGTTG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1440_1441insGTTG
  hgvsp: ENSP00000340454.5:p.Lys481ValfsTer6
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1437_1438insGTTG
  hgvsp: ENSP00000407157.2:p.Lys480ValfsTer6
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1164_1165insGTTG
  hgvsp: ENSP00000264572.7:p.Lys389ValfsTer6
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1293_1294insGTTG
  hgvsp: ENSP00000369503.4:p.Lys432ValfsTer6
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1290_1291insGTTG
  hgvsp: ENSP00000386223.3:p.Lys431ValfsTer6
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1437_1438insGTTG
  hgvsp: ENSP00000386153.3:p.Lys480ValfsTer6
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24525
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4631
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys481ValfsTer6
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

4-99342552-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342552
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342552
    reference: chr 4
allele count: 1
allele frequency: 9.271621421154131e-6
allele num: 107856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1296+7T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1443+7T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1440+7T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1440+7T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1167+7T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1293+7T>C
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11504
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13144
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2623
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1443+7T>C
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-99342564-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342564
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342564
    reference: chr 4
allele count: 3
allele frequency: 2.891454787285309e-5
allele num: 103754
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1167+19T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1440+19T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1293+19T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1440+19T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1443+19T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1296+19T>C
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18579
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13125
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9537
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17923
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2706
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4081
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

4-99342571-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342571
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342571
    reference: chr 4
allele count: 1
allele frequency: 9.861932938856015e-6
allele num: 101400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1293+26T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1440+26T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1440+26T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1167+26T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1296+26T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1443+26T>C
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9639
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19273
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6679
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14731
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3412
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2233
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5081
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

4-99342580-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342580
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342580
    reference: chr 4
allele count: 1
allele frequency: 1.024716153625446e-5
allele num: 97588
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1440+35T>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1440+35T>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1443+35T>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1167+35T>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1296+35T>A
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1293+35T>A
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10820
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9684
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5749
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5349
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18590
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8313
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1888
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

4-99342583-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342583
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342583
    reference: chr 4
allele count: 24
allele frequency: 2.488077959776073e-4
allele num: 96460
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1440+38G>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1296+38G>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1293+38G>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1440+38G>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1443+38G>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1167+38G>C
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4911
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22729
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10095
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11811
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5820
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 18269
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5658
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 2676
  bin: 9.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 2073
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genotype quality: GenotypeQuality
  all individuals: 7250
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

4-99342586-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342586
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342586
    reference: chr 4
allele count: 1
allele frequency: 1.049670403493303e-5
allele num: 95268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1293+41T>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1440+41T>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1443+41T>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1440+41T>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1167+41T>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1296+41T>G
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22232
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8845
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17316
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5614
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

4-99342596-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99342596
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99342596
    reference: chr 4
allele count: 2
allele frequency: 2.254893118066204e-5
allele num: 88696
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1440+51A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1293+51A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1296+51A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1167+51A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1443+51A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1440+51A>G
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13055
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20513
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12711
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5539
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2299
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2651
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8865
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12935
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2461
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

4-99355039-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99355039
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99355039
    reference: chr 4
allele count: 1
allele frequency: 8.991350320991206e-6
allele num: 111218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1441-48T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1294-48T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1441-48T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1444-48T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1168-48T>C
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1297-48T>C
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4080
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10010
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3850
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5013
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5485
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5646
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 2855
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4655
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

4-99355055-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99355055
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99355055
    reference: chr 4
allele count: 10
allele frequency: 8.89236679234545e-5
allele num: 112456
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1441-32A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1441-32A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1297-32A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1444-32A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1294-32A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1168-32A>G
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26326
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10086
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2143
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 3.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4217
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genotype quality: GenotypeQuality
  all individuals: 2971
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-99355062-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99355062
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99355062
    reference: chr 4
allele count: 1
allele frequency: 8.761631065239105e-6
allele num: 114134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1297-25A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1441-25A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1441-25A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1444-25A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1294-25A>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1168-25A>G
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11024
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30414
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
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genotype quality: GenotypeQuality
  all individuals: 2284
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6196
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

4-99355068-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99355068
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99355068
    reference: chr 4
allele count: 5
allele frequency: 4.297304730473048e-5
allele num: 116352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1441-19C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1441-19C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1444-19C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1297-19C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1294-19C>G
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1168-19C>G
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11621
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2354
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

4-99355070-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99355070
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99355070
    reference: chr 4
allele count: 1
allele frequency: 8.546716351577724e-6
allele num: 117004
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1294-17G>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1297-17G>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1441-17G>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1441-17G>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1444-17G>T
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1168-17G>T
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5697
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2353
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

4-99355071-ATAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99355071
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99355068
    reference: chr 4
allele count: 5
allele frequency: 4.260104968986436e-5
allele num: 117368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1441-11_1441-9delATT
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1441-11_1441-9delATT
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1168-11_1168-9delATT
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1444-11_1444-9delATT
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1294-11_1294-9delATT
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1297-11_1297-9delATT
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34467
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3287
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: ATAT
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

4-99355101-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99355101
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99355101
    reference: chr 4
allele count: 1
allele frequency: 8.2917364554485e-6
allele num: 120602
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1311C>G
  hgvsp: ENST00000380158.4:c.1311C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1455C>G
  hgvsp: ENST00000453712.2:c.1455C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1455C>G
  hgvsp: ENST00000408927.3:c.1455C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1458C>G
  hgvsp: ENST00000339360.5:c.1458C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1182C>G
  hgvsp: ENST00000264572.7:c.1182C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1308C>G
  hgvsp: ENST00000408900.3:c.1308C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2495
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5730
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr486Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-99355102-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99355102
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99355102
    reference: chr 4
allele count: 3
allele frequency: 2.487108487672232e-5
allele num: 120622
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1456A>G
  hgvsp: ENSP00000386153.3:p.Ile486Val
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1459A>G
  hgvsp: ENSP00000340454.5:p.Ile487Val
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1312A>G
  hgvsp: ENSP00000369503.4:p.Ile438Val
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1456A>G
  hgvsp: ENSP00000407157.2:p.Ile486Val
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1183A>G
  hgvsp: ENSP00000264572.7:p.Ile395Val
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1309A>G
  hgvsp: ENSP00000386223.3:p.Ile437Val
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5731
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3398
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2449
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile487Val
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

4-99355180-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99355180
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99355180
    reference: chr 4
allele count: 5
allele frequency: 4.140923922945688e-5
allele num: 120746
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1261G>C
  hgvsp: ENSP00000264572.7:p.Val421Leu
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1387G>C
  hgvsp: ENSP00000386223.3:p.Val463Leu
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1534G>C
  hgvsp: ENSP00000386153.3:p.Val512Leu
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1534G>C
  hgvsp: ENSP00000407157.2:p.Val512Leu
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1537G>C
  hgvsp: ENSP00000340454.5:p.Val513Leu
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1390G>C
  hgvsp: ENSP00000369503.4:p.Val464Leu
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7055
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36852
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val513Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum

4-99355180-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99355180
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99355180
    reference: chr 4
allele count: 1
allele frequency: 8.281847845891375e-6
allele num: 120746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1534G>T
  hgvsp: ENSP00000407157.2:p.Val512Phe
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1261G>T
  hgvsp: ENSP00000264572.7:p.Val421Phe
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1387G>T
  hgvsp: ENSP00000386223.3:p.Val463Phe
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1534G>T
  hgvsp: ENSP00000386153.3:p.Val512Phe
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1537G>T
  hgvsp: ENSP00000340454.5:p.Val513Phe
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1390G>T
  hgvsp: ENSP00000369503.4:p.Val464Phe
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7055
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3398
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36852
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2449
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val513Phe
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum

4-99355183-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99355183
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 99355183
    reference: chr 4
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000369503
  ensembl transcript: ENST00000380158
  gene symbol: RAP1GDS1
  hgvsc: ENST00000380158.4:c.1393G>A
  hgvsp: ENSP00000369503.4:p.Ala465Thr
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386153
  ensembl transcript: ENST00000408927
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408927.3:c.1537G>A
  hgvsp: ENSP00000386153.3:p.Ala513Thr
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000340454
  ensembl transcript: ENST00000339360
  gene symbol: RAP1GDS1
  hgvsc: ENST00000339360.5:c.1540G>A
  hgvsp: ENSP00000340454.5:p.Ala514Thr
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000407157
  ensembl transcript: ENST00000453712
  gene symbol: RAP1GDS1
  hgvsc: ENST00000453712.2:c.1537G>A
  hgvsp: ENSP00000407157.2:p.Ala513Thr
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000264572
  ensembl transcript: ENST00000264572
  gene symbol: RAP1GDS1
  hgvsc: ENST00000264572.7:c.1264G>A
  hgvsp: ENSP00000264572.7:p.Ala422Thr
  variant of: http://identifiers.org/hgnc/9859
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138698
  ensembl protein: ENSP00000386223
  ensembl transcript: ENST00000408900
  gene symbol: RAP1GDS1
  hgvsc: ENST00000408900.3:c.1390G>A
  hgvsp: ENSP00000386223.3:p.Ala464Thr
  variant of: http://identifiers.org/hgnc/9859
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2503
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3400
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala514Thr
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3170
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1650
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 112
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 7.25e1
variant carriers: 2

African
type: Population
allele count: 2852
allele frequency: 2.911986930773943e-1
allele num: 9794
num of homozygotes: 412

Other
type: Population
allele count: 85
allele frequency: 9.465478841870824e-2
allele num: 898
num of homozygotes: 7

European (Non-Finnish)
type: Population
allele count: 4754
allele frequency: 7.143501126972202e-2
allele num: 66550
num of homozygotes: 181

South Asian
type: Population
allele count: 1531
allele frequency: 9.405332350411598e-2
allele num: 16278
num of homozygotes: 75

European (Finnish)
type: Population
allele count: 643
allele frequency: 9.721802237677653e-2
allele num: 6614
num of homozygotes: 34

East Asian
type: Population
allele count: 340
allele frequency: 3.943400603108328e-2
allele num: 8622
num of homozygotes: 4

Latino
type: Population
allele count: 2584
allele frequency: 2.233362143474503e-1
allele num: 11570
num of homozygotes: 301

QD
type: SiteQuality
SIO_000300: 1.541e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

DP
type: SiteQuality
SIO_000300: 3.240715e6

VQSLOD
type: SiteQuality
SIO_000300: 5.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.82e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

FS
type: SiteQuality
SIO_000300: 5.2e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

GenotypeQuality
all individuals: 3920
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3910
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11161
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3927
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2120
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.065228052967141e-4
allele num: 16312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.29e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

DP
type: SiteQuality
SIO_000300: 2.751527e6

GenotypeQuality
all individuals: 11296
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2057
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3911
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2119
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3916
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28234
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4262
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.116956202593589e-5
allele num: 16348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.02e-1

FS
type: SiteQuality
SIO_000300: 3.632e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.37e-1

DP
type: SiteQuality
SIO_000300: 2.752478e6

QD
type: SiteQuality
SIO_000300: 1.565e1

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3910
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28236
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3915
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11531
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.754606e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

FS
type: SiteQuality
SIO_000300: 1.103e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.05e-1

QD
type: SiteQuality
SIO_000300: 1.373e1

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3915
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28236
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3928
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3910
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50159168718842e-5
allele num: 66596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.041649652919559e-4
allele num: 9796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

QD
type: SiteQuality
SIO_000300: 1.373e1

FS
type: SiteQuality
SIO_000300: 1.103e0

DP
type: SiteQuality
SIO_000300: 2.754606e6

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3907
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3923
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3910
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11531
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.062474479379339e-4
allele num: 9796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.754937e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.323e0

QD
type: SiteQuality
SIO_000300: 1.135e1

GenotypeQuality
all individuals: 2115
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3906
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11715
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2055
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3921
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4277
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28235
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.821936110773715e-4
allele num: 16466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.11e-1

FS
type: SiteQuality
SIO_000300: 2.816e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.56e0

VQSLOD
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.756244e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-2

QD
type: SiteQuality
SIO_000300: 1.039e1

GenotypeQuality
all individuals: 71
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11799
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3922
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3905
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28233
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3909
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.757061e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

VQSLOD
type: SiteQuality
SIO_000300: -1.203e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.98e-1

FS
type: SiteQuality
SIO_000300: 5.109e0

QD
type: SiteQuality
SIO_000300: 1.031e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

MQ
type: SiteQuality
SIO_000300: 5.895e1

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4284
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3909
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11790
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28230
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3922
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e0

QD
type: SiteQuality
SIO_000300: 1.37e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.579e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.153e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.867e0

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.32e-1

DP
type: SiteQuality
SIO_000300: 2.757033e6

GenotypeQuality
all individuals: 4287
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28230
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 2.1e-3

VQSLOD
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ClippingRankSum
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MQRankSum
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FS
type: SiteQuality
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DP
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QD
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BaseQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

East Asian
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allele num: 8622
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South Asian
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allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

VQSLOD
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QD
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MQ
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BaseQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 1.787e0

ClippingRankSum
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SIO_000300: -1.87e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.757127e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.500045000450004e-5
allele num: 66666
num of homozygotes: 0

BaseQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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MQ
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SIO_000300: 5.945e1

ReadPosRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 7.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.31e-1

DP
type: SiteQuality
SIO_000300: 2.757001e6

QD
type: SiteQuality
SIO_000300: 1.421e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

VQSLOD
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.978e1

FS
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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DP
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SIO_000300: 2.756564e6

QD
type: SiteQuality
SIO_000300: 1.102e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.72e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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MQ
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SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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MQRankSum
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ClippingRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
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allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
type: SiteQuality
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MQ
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FS
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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African
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Other
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allele frequency: 0.0e0
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European (Finnish)
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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MQ
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FS
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DP
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8620
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African
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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Other
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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FS
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VQSLOD
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DP
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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African
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Other
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European (Non-Finnish)
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South Asian
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ReadPosRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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DP
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FS
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BaseQRankSum
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VQSLOD
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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Other
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European (Non-Finnish)
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African
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.752869e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.467e1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e0

VQSLOD
type: SiteQuality
SIO_000300: -7.668e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.35e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

GenotypeQuality
all individuals: 4161
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
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GenotypeQuality
all individuals: 2043
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3862
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3896
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504347564461293e-5
allele num: 66474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16314
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.883e1

FS
type: SiteQuality
SIO_000300: 1.182e0

QD
type: SiteQuality
SIO_000300: 2.7e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: -2.816e0

DP
type: SiteQuality
SIO_000300: 2.743793e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
all individuals: 3896
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3900
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505072092953252e-5
allele num: 66442
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.277e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.03e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e-1

DP
type: SiteQuality
SIO_000300: 2.739285e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.05e0

QD
type: SiteQuality
SIO_000300: 9.69e0

GenotypeQuality
all individuals: 3895
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3847
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506841058405159e-5
allele num: 66364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16146
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.001e0

VQSLOD
type: SiteQuality
SIO_000300: -5.783e-1

QD
type: SiteQuality
SIO_000300: 2.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

MQ
type: SiteQuality
SIO_000300: 3.614e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e-1

FS
type: SiteQuality
SIO_000300: 6.719e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.532e0

DP
type: SiteQuality
SIO_000300: 2.726519e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.085e0

GenotypeQuality
all individuals: 1414
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3891
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3892
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28190
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3981
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9383
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66344
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.028594939312899e-4
allele num: 9722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.721954e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 1.268e1

FS
type: SiteQuality
SIO_000300: 2.272e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.66e-1

GenotypeQuality
all individuals: 2034
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
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variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
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variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3890
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.222000995520159e-5
allele num: 16072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66328
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.992e0

VQSLOD
type: SiteQuality
SIO_000300: -7.359e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-2

DP
type: SiteQuality
SIO_000300: 2.720435e6

MQRankSum
type: SiteQuality
SIO_000300: -8.28e-1

GenotypeQuality
all individuals: 8547
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28183
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 148
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2028
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
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variant carriers: 0

GenotypeQuality
all individuals: 3901
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

FS
type: SiteQuality
SIO_000300: 2.562e0

MQ
type: SiteQuality
SIO_000300: 5.868e1

QD
type: SiteQuality
SIO_000300: 1.127e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.17e-1

DP
type: SiteQuality
SIO_000300: 2.710555e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.18e0

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.582e-1

GenotypeQuality
all individuals: 3843
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 15
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3798
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variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1987
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15992
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9708
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.490807540144287e-4
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: 8.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

FS
type: SiteQuality
SIO_000300: 5.568e0

QD
type: SiteQuality
SIO_000300: 1.203e1

DP
type: SiteQuality
SIO_000300: 2.705484e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.166e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1953
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28224
bin: 9.75e1
variant carriers: 92

GenotypeQuality
all individuals: 236
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 4.380664652567976e-4
allele num: 66200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

South Asian
type: Population
allele count: 65
allele frequency: 4.074213363419832e-3
allele num: 15954
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.128668171557562e-3
allele num: 886
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.2e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.696773e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.327e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

GenotypeQuality
all individuals: 7290
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28162
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 3854
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.767897513187641e-4
allele num: 15924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66196
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

DP
type: SiteQuality
SIO_000300: 2.693395e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

FS
type: SiteQuality
SIO_000300: 9.409999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.48e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5505
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28151
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3686
bin: 7.75e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.34517766497462e-5
allele num: 15760
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66030
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.680265e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.091e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538745614574998e-5
allele num: 64988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12212
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.385e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.443e0

DP
type: SiteQuality
SIO_000300: 1.650214e6

QD
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SIO_000300: 1.907e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.728e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.05e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538508877196221e-5
allele num: 64998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.650995e6

VQSLOD
type: SiteQuality
SIO_000300: 4.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.081e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.781e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

QD
type: SiteQuality
SIO_000300: 1.109e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 8.126117341134406e-5
allele num: 12306
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.691124442393478e-5
allele num: 65010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.73550850399167e-4
allele num: 11524
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.834e0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.24e-1

FS
type: SiteQuality
SIO_000300: 7.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-2

QD
type: SiteQuality
SIO_000300: 1.168e1

DP
type: SiteQuality
SIO_000300: 1.652433e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.329916123019571e-4
allele num: 8584
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.546e0

DP
type: SiteQuality
SIO_000300: 1.652791e6

VQSLOD
type: SiteQuality
SIO_000300: 7.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 1.971e0

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.89e-1

QD
type: SiteQuality
SIO_000300: 1.069e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536853752996865e-5
allele num: 65068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.224e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -3.583e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.62e-1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12778
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.662531e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -1.153e0

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.642e1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.229e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 13052
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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ClippingRankSum
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DP
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 13052
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

InbreedingCoeff
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DP
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BaseQRankSum
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MQ
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 65590
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele num: 11544
num of homozygotes: 0

Other
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num of homozygotes: 0

FS
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 8.25e1
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GenotypeQuality
all individuals: 498
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66190
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.022076860179886e-4
allele num: 9784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 1.337e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.936e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.70494e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.41e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 9

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013682116810319e-5
allele num: 66364
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.049083995852057e-4
allele num: 11572
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

DP
type: SiteQuality
SIO_000300: 1.71423e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e-1

QD
type: SiteQuality
SIO_000300: 1.345e1

MQRankSum
type: SiteQuality
SIO_000300: 4.43e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

FS
type: SiteQuality
SIO_000300: 1.747e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 370
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 1.723349e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 5.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e0

MQRankSum
type: SiteQuality
SIO_000300: -3.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.45e-1

QD
type: SiteQuality
SIO_000300: 1.353e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.723349e6

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: -3.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 5.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.353e1

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 369
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6946
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001921229586936e-5
allele num: 66624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 4.166e0

MQ
type: SiteQuality
SIO_000300: 5.91e1

DP
type: SiteQuality
SIO_000300: 1.724983e6

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e-1

QD
type: SiteQuality
SIO_000300: 9.77e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 995
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 2858
bin: 9.75e1
variant carriers: 14

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.122534230679972e-4
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.003871664815871e-5
allele num: 66638
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

DP
type: SiteQuality
SIO_000300: 1.725303e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.04e-1

FS
type: SiteQuality
SIO_000300: 1.112e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.172e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12
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variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212415130940834e-4
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000030000300003e-5
allele num: 66666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.139e0

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.725287e6

ClippingRankSum
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SIO_000300: -3.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.5e-1

DP
type: SiteQuality
SIO_000300: 1.725131e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.58e-1

QD
type: SiteQuality
SIO_000300: 8.19e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1671
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2800
bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 930
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503216884132043e-5
allele num: 66524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.612e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

DP
type: SiteQuality
SIO_000300: 1.717693e6

MQRankSum
type: SiteQuality
SIO_000300: -7.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 461
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GenotypeQuality
all individuals: 1719
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 20
allele frequency: 3.03030303030303e-3
allele num: 6600
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.009238361770636e-5
allele num: 66462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

DP
type: SiteQuality
SIO_000300: 1.715382e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.286e0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.19e-1

QD
type: SiteQuality
SIO_000300: 1.604e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

GenotypeQuality
all individuals: 143
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6603
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 444
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.100582909587002e-4
allele num: 16126
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.96e-1

DP
type: SiteQuality
SIO_000300: 1.705384e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.02e0

QD
type: SiteQuality
SIO_000300: 1.27e1

FS
type: SiteQuality
SIO_000300: 2.933e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.89e-1

GenotypeQuality
all individuals: 1097
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1581
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2741
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512538947877908e-5
allele num: 66114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.829e0

FS
type: SiteQuality
SIO_000300: 2.793e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.360000000000001e-1

QD
type: SiteQuality
SIO_000300: 2.076e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.701994e6

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15524
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.781173164734808e-5
allele num: 11388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.66968e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e0

VQSLOD
type: SiteQuality
SIO_000300: -7.62e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.452e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 4.93e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.247e1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.264e0

GenotypeQuality
all individuals: 3688
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1377
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 40987
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variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5873
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542971763616726e-5
allele num: 64810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11292
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.81e1

VQSLOD
type: SiteQuality
SIO_000300: -2.363e0

MQRankSum
type: SiteQuality
SIO_000300: 7.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.1e-2

FS
type: SiteQuality
SIO_000300: 1.7697e1

DP
type: SiteQuality
SIO_000300: 1.639401e6

GenotypeQuality
all individuals: 3964
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2710
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5830
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.528117359413203e-4
allele num: 6544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545499505440158e-5
allele num: 64704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.631368e6

QD
type: SiteQuality
SIO_000300: 7.72e0

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.75e-1

FS
type: SiteQuality
SIO_000300: 7.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.377e0

VQSLOD
type: SiteQuality
SIO_000300: -7.89e-2

GenotypeQuality
all individuals: 409
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1049
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35989
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8386
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2684
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
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variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.206687806284232e-5
allele num: 13876
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.423e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 6.987e0

QD
type: SiteQuality
SIO_000300: 1.28e0

VQSLOD
type: SiteQuality
SIO_000300: -1.622e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.423e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 4.129e1

DP
type: SiteQuality
SIO_000300: 1.520177e6

GenotypeQuality
all individuals: 409
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3659
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29142
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2674
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1175
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.751937984496124e-5
allele num: 12900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10586
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.843e1

VQSLOD
type: SiteQuality
SIO_000300: -1.918e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

DP
type: SiteQuality
SIO_000300: 1.394801e6

QD
type: SiteQuality
SIO_000300: 1.571e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.36e-1

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2341
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4978
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20044
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
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variant carriers: 0

GenotypeQuality
all individuals: 2663
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 469
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.156942964210816e-5
allele num: 58174
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12012
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.061e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.47e-1

DP
type: SiteQuality
SIO_000300: 1.230699e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.48e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.54e-1

GenotypeQuality
all individuals: 452
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2655
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 659
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 351
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variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.357220412595005e-4
allele num: 7368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.821e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.145077e6

VQSLOD
type: SiteQuality
SIO_000300: 3.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 1.433e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.64e-1

GenotypeQuality
all individuals: 1128
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 2.5e0
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GenotypeQuality
all individuals: 2652
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 445
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variant carriers: 0

GenotypeQuality
all individuals: 349
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variant carriers: 0

GenotypeQuality
all individuals: 8432
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.817454836247319e-5
allele num: 55022
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7082
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10498
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.739e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.359e0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 1.05554e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

QD
type: SiteQuality
SIO_000300: 1.57e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.373e0

GenotypeQuality
all individuals: 569
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8613
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 3.49123516225056e-4
allele num: 54422
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.03777501037775e-4
allele num: 9636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.565988181221273e-4
allele num: 6092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.039238e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

FS
type: SiteQuality
SIO_000300: 2.458e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

QD
type: SiteQuality
SIO_000300: 1.544e1

GenotypeQuality
all individuals: 1503
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5903
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2651
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 555
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6056
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.001001001001001e-4
allele num: 9990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53778
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.020038e6

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.23e0

QD
type: SiteQuality
SIO_000300: 1.047e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

GenotypeQuality
all individuals: 449
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6340
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3310
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5790
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.978990927900685e-5
allele num: 50264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8942
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.90947e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.931e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.321e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

GenotypeQuality
all individuals: 11643
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1946
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variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3734
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4204
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.643979746169527e-5
allele num: 60828
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.396e0

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQ
type: SiteQuality
SIO_000300: 5.894e1

DP
type: SiteQuality
SIO_000300: 1.380872e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.434e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

VQSLOD
type: SiteQuality
SIO_000300: -8.973e-1

GenotypeQuality
all individuals: 781
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5674
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26249
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5668
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 725
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2164
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11218
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.6103500761035e-4
allele num: 7884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.250341285835012e-5
allele num: 61532
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.173708920187793e-3
allele num: 852
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.104728236853734e-4
allele num: 9052
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

DP
type: SiteQuality
SIO_000300: 1.489183e6

QD
type: SiteQuality
SIO_000300: 1.854e1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.0e-2

GenotypeQuality
all individuals: 3143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5675
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2291
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.846426043878273e-5
allele num: 11304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8088
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15672
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

DP
type: SiteQuality
SIO_000300: 1.54494e6

MQRankSum
type: SiteQuality
SIO_000300: 2.08e0

VQSLOD
type: SiteQuality
SIO_000300: -1.494e0

QD
type: SiteQuality
SIO_000300: 1.714e1

FS
type: SiteQuality
SIO_000300: 1.278e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 6540
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33578
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3221
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2343
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5694
bin: 9.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8308
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.122658006495129e-4
allele num: 16012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 1.003e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.587778e6

QD
type: SiteQuality
SIO_000300: 1.497e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
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variant carriers: 0

GenotypeQuality
all individuals: 3257
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variant carriers: 0

GenotypeQuality
all individuals: 34201
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variant carriers: 0

GenotypeQuality
all individuals: 2365
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variant carriers: 0

GenotypeQuality
all individuals: 237
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variant carriers: 0

GenotypeQuality
all individuals: 6615
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55802069051477e-5
allele num: 64184
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.063e0

QD
type: SiteQuality
SIO_000300: 1.155e1

DP
type: SiteQuality
SIO_000300: 1.598359e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.997e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-2

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.921e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2385
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variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2386
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.764939744067586e-5
allele num: 64392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e-1

FS
type: SiteQuality
SIO_000300: 5.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.82e-1

QD
type: SiteQuality
SIO_000300: 1.996e1

MQ
type: SiteQuality
SIO_000300: 5.569e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

DP
type: SiteQuality
SIO_000300: 1.602785e6

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
all individuals: 7022
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variant carriers: 0

GenotypeQuality
all individuals: 18
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 36774
bin: 6.25e1
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GenotypeQuality
all individuals: 1382
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 976
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3395
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.643897e6

MQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

QD
type: SiteQuality
SIO_000300: 4.2e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.273e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.227e0

GenotypeQuality
all individuals: 2500
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 7026
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 977
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36788
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730103806228374e-4
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.45e-1

FS
type: SiteQuality
SIO_000300: 5.268e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

MQ
type: SiteQuality
SIO_000300: 5.978e1

DP
type: SiteQuality
SIO_000300: 1.644188e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.54e0

QD
type: SiteQuality
SIO_000300: 1.275e1

GenotypeQuality
all individuals: 2449
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5735
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2502
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3398
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 5.102040816326531e-4
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.368e1

DP
type: SiteQuality
SIO_000300: 1.646817e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.86e-1

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5735
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 5.42e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

DP
type: SiteQuality
SIO_000300: 1.646817e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

GenotypeQuality
all individuals: 36853
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7055
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2450
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5734
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.88e-1