1-54694110-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694110
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694110
    reference: chr 1
allele count: 1
allele frequency: 8.250961236984109e-6
allele num: 121198
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1035+12C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1720C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.954+12C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.749+12C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.116+12C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.705+12C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.975+12C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1082+12C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2940
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

1-54694131-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694131
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694131
    reference: chr 1
allele count: 1
allele frequency: 8.257638315441784e-6
allele num: 121100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.945A>T
  hgvsp: ENST00000371319.3:c.945A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.107A>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.696A>T
  hgvsp: ENST00000417664.2:c.696A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1073A>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1741A>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.740A>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1026A>T
  hgvsp: ENST00000371320.3:c.1026A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.966A>T
  hgvsp: ENST00000357475.4:c.966A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1660
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37003
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly342Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

1-54694134-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694134
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694134
    reference: chr 1
allele count: 2
allele frequency: 1.651636772041093e-5
allele num: 121092
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.963C>T
  hgvsp: ENST00000357475.4:c.963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.693C>T
  hgvsp: ENST00000417664.2:c.693C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.737C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.942C>T
  hgvsp: ENST00000371319.3:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1070C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1023C>T
  hgvsp: ENST00000371320.3:c.1023C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1744C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.104C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp341Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-54694143-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694143
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694143
    reference: chr 1
allele count: 8
allele frequency: 6.613756613756614e-5
allele num: 120960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.684C>T
  hgvsp: ENST00000417664.2:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1061C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.933C>T
  hgvsp: ENST00000371319.3:c.933C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1014C>T
  hgvsp: ENST00000371320.3:c.1014C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.954C>T
  hgvsp: ENST00000357475.4:c.954C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.728C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1753C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.95C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2901
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9441
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly338Gly
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

http://identifiers.org/exac.variant/1-54694148-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694148
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694148
    reference: chr 1
allele count: 14
allele frequency: 1.158288380712844e-4
allele num: 120868
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.90T>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.949T>G
  hgvsp: ENSP00000350067.4:p.Ser317Ala
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.679T>G
  hgvsp: ENSP00000414361.2:p.Ser227Ala
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1009T>G
  hgvsp: ENSP00000360371.3:p.Ser337Ala
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1056T>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.723T>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.928T>G
  hgvsp: ENSP00000360370.3:p.Ser310Ala
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1758T>G
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14444
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser337Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-54694155-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694155
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694155
    reference: chr 1
allele count: 2
allele frequency: 1.656891009709381e-5
allele num: 120708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.677-5T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1765T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1007-5T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.721-5T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1054-5T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.88-5T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.926-5T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.947-5T>C
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28025
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1007-5T>C
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

1-54694156-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694156
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694156
    reference: chr 1
allele count: 1
allele frequency: 8.289949265510494e-6
allele num: 120628
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1766T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1007-6T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.926-6T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.88-6T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.677-6T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.947-6T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1054-6T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.721-6T>C
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1007-6T>C
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

1-54694168-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694168
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694168
    reference: chr 1
allele count: 52
allele frequency: 4.335067360277445e-4
allele num: 119952
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.926-18A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1778A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.721-18A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.88-18A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1054-18A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.947-18A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.677-18A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1007-18A>G
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7777
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13767
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26283
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8831
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2531
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

1-54694172-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694172
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694172
    reference: chr 1
allele count: 1
allele frequency: 8.354777261638205e-6
allele num: 119692
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.88-22T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.926-22T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.721-22T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1782T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1054-22T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.677-22T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.947-22T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1007-22T>C
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13304
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32317
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

1-54694177-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694177
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694177
    reference: chr 1
allele count: 1
allele frequency: 8.377735330585436e-6
allele num: 119364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.88-27C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.721-27C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.677-27C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1054-27C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.926-27C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.947-27C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1787C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1007-27C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3556
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD

1-54694183-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694183
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694183
    reference: chr 1
allele count: 1
allele frequency: 8.407883231317684e-6
allele num: 118936
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.926-33A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1054-33A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.947-33A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1793A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.721-33A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.88-33A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.677-33A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1007-33A>G
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23491
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4310
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4715
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2407
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

1-54694190-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694190
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694190
    reference: chr 1
allele count: 1
allele frequency: 8.458662516282926e-6
allele num: 118222
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1007-40A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.947-40A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.88-40A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1800A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.926-40A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.677-40A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1054-40A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.721-40A>G
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14052
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4670
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5855
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17034
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

1-54694195-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694195
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694195
    reference: chr 1
allele count: 2
allele frequency: 1.703838748700823e-5
allele num: 117382
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1007-45G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.721-45G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1805G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.677-45G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.88-45G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.926-45G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1054-45G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.947-45G>C
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11586
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14709
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12635
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5489
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4709
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4328
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

1-54694197-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694197
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694197
    reference: chr 1
allele count: 1
allele frequency: 8.549200649739249e-6
allele num: 116970
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.947-47G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.677-47G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.926-47G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1007-47G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.721-47G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1807G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.88-47G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1054-47G>A
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10706
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4015
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4227
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3479
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-54694198-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694198
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694198
    reference: chr 1
allele count: 21
allele frequency: 1.799732611154914e-4
allele num: 116684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1054-48C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.721-48C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.926-48C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.88-48C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1808C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.947-48C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1007-48C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.677-48C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8192
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13639
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10311
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14561
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2779
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5557
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4724
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3941
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD

1-54694201-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694201
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694201
    reference: chr 1
allele count: 1
allele frequency: 8.586344278060173e-6
allele num: 116464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1054-51C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1811C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.721-51C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.88-51C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.677-51C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1007-51C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.926-51C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.947-51C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4866
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3489
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6455
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4733
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6506
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2755
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5207
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

1-54694201-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694201
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694201
    reference: chr 1
allele count: 29
allele frequency: 2.49003984063745e-4
allele num: 116464
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.88-51C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.677-51C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.721-51C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1811C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.926-51C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.947-51C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1054-51C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1007-51C>G
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9829
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4866
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14368
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14439
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8213
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2755
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6506
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5207
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

1-54694375-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694375
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694375
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 26066
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1053+46C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.946+46C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1985C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.676+46C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1006+46C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.87+46C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.925+46C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.720+46C>G
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25420
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20856
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7645
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14527
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

1-54694386-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694386
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694386
    reference: chr 1
allele count: 3
allele frequency: 1.143118427069044e-4
allele num: 26244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1053+35G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.925+35G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.946+35G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.720+35G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.87+35G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1006+35G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1996G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.676+35G>A
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26870
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6382
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19433
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2192
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18847
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16756
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5974
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2309
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

1-54694389-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694389
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694389
    reference: chr 1
allele count: 1
allele frequency: 3.763926528154171e-5
allele num: 26568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.925+32C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1053+32C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-1999C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.720+32C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.87+32C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1006+32C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.676+32C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.946+32C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18594
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2858
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16339
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4901
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5417
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

1-54694400-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694400
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694400
    reference: chr 1
allele count: 1
allele frequency: 3.407155025553662e-5
allele num: 29350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1053+21C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2010C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.720+21C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.676+21C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.925+21C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1006+21C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.946+21C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.87+21C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6809
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3208
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26610
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13091
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD

1-54694401-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694401
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694401
    reference: chr 1
allele count: 6
allele frequency: 2.038320423970648e-4
allele num: 29436
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1053+20G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.720+20G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.946+20G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.87+20G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2011G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.676+20G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.925+20G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1006+20G>A
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13533
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12629
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2548
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3038
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

1-54694402-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694402
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694402
    reference: chr 1
allele count: 1
allele frequency: 3.245278120334913e-5
allele num: 30814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.946+19C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.720+19C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.925+19C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.87+19C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.676+19C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2012C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1053+19C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1006+19C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6951
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11899
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29905
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-54694412-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694412
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694412
    reference: chr 1
allele count: 70
allele frequency: 1.867463451072458e-3
allele num: 37484
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.87+9C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.925+9C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.676+9C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.720+9C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1006+9C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1053+9C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2022C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.946+9C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6731
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6860
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 1.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 34507
  bin: 7.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33411
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7396
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 9.75e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 9.25e1
  variant carriers: 6
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-54694414-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694414
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694414
    reference: chr 1
allele count: 1
allele frequency: 2.54569522936714e-5
allele num: 39282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.720+7G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.1006+7G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.87+7G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.676+7G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1053+7G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.946+7G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2024G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.925+7G>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8078
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1006+7G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

1-54694442-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694442
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694442
    reference: chr 1
allele count: 1
allele frequency: 1.540309910353963e-5
allele num: 64922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.655C>T
  hgvsp: ENSP00000414361.2:p.His219Tyr
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.904C>T
  hgvsp: ENSP00000360370.3:p.His302Tyr
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2052C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.66C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.985C>T
  hgvsp: ENSP00000360371.3:p.His329Tyr
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1032C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.699C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.925C>T
  hgvsp: ENSP00000350067.4:p.His309Tyr
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5616
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19978
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.75e1
  variant carriers: 0
hgvs: p.His329Tyr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

1-54694446-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694446
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694446
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 68692
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1028G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.695G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.921G>C
  hgvsp: ENSP00000350067.4:p.Glu307Asp
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.62G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.900G>C
  hgvsp: ENSP00000360370.3:p.Glu300Asp
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.981G>C
  hgvsp: ENSP00000360371.3:p.Glu327Asp
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2056G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.651G>C
  hgvsp: ENSP00000414361.2:p.Glu217Asp
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24022
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu327Asp
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

1-54694455-ACCCATGCCG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694455
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694446
    reference: chr 1
allele count: 1
allele frequency: 1.288792659037014e-5
allele num: 77592
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.963_971delCGGCATGGG
  hgvsp: ENSP00000360371.3:p.Gly324_Met326del
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.633_641delCGGCATGGG
  hgvsp: ENSP00000414361.2:p.Gly214_Met216del
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.677_685delCGGCATGGG
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.903_911delCGGCATGGG
  hgvsp: ENSP00000350067.4:p.Gly304_Met306del
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.44_52delCGGCATGGG
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.882_890delCGGCATGGG
  hgvsp: ENSP00000360370.3:p.Gly297_Met299del
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4843
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2043
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26735
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20550
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly324_Met326del
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: ACCCATGCCG
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum

1-54694460-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694460
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694460
    reference: chr 1
allele count: 1
allele frequency: 1.201432107071629e-5
allele num: 83234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1014A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.886A>G
  hgvsp: ENSP00000360370.3:p.Met296Val
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.967A>G
  hgvsp: ENSP00000360371.3:p.Met323Val
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.681A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.907A>G
  hgvsp: ENSP00000350067.4:p.Met303Val
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2070A>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.637A>G
  hgvsp: ENSP00000414361.2:p.Met213Val
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.48A>G
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18232
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met323Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

1-54694464-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694464
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694464
    reference: chr 1
allele count: 1
allele frequency: 1.16425278256415e-5
allele num: 85892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.633C>T
  hgvsp: ENST00000417664.2:c.633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1010C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.44C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.903C>T
  hgvsp: ENST00000357475.4:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2074C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.963C>T
  hgvsp: ENST00000371320.3:c.963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.882C>T
  hgvsp: ENST00000371319.3:c.882C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.677C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29399
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31089
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly321Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

1-54694470-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694470
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694470
    reference: chr 1
allele count: 3
allele frequency: 3.43918376705262e-5
allele num: 87230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.897G>A
  hgvsp: ENST00000357475.4:c.897G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.671G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.876G>A
  hgvsp: ENST00000371319.3:c.876G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2080G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.627G>A
  hgvsp: ENST00000417664.2:c.627G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.38G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.957G>A
  hgvsp: ENST00000371320.3:c.957G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.1004G>A
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6125
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14914
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29500
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro319Pro
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

1-54694475-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694475
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694475
    reference: chr 1
allele count: 1
allele frequency: 1.127777151234916e-5
allele num: 88670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2085G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.666G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.892G>A
  hgvsp: ENSP00000350067.4:p.Gly298Ser
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.33G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.952G>A
  hgvsp: ENSP00000360371.3:p.Gly318Ser
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.622G>A
  hgvsp: ENSP00000414361.2:p.Gly208Ser
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.999G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.871G>A
  hgvsp: ENSP00000360370.3:p.Gly291Ser
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30575
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly318Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP

1-54694476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694476
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694476
    reference: chr 1
allele count: 4
allele frequency: 4.501057748570914e-5
allele num: 88868
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.870C>T
  hgvsp: ENST00000371319.3:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.621C>T
  hgvsp: ENST00000417664.2:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2086C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.951C>T
  hgvsp: ENST00000371320.3:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.998C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.891C>T
  hgvsp: ENST00000357475.4:c.891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.665C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.32C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6500
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16262
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp317Asp
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

1-54694480-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694480
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694480
    reference: chr 1
allele count: 2
allele frequency: 2.221432379598365e-5
allele num: 90032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.28C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.661C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.617C>T
  hgvsp: ENSP00000414361.2:p.Ser206Leu
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.947C>T
  hgvsp: ENSP00000360371.3:p.Ser316Leu
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.887C>T
  hgvsp: ENSP00000350067.4:p.Ser296Leu
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.994C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.866C>T
  hgvsp: ENSP00000360370.3:p.Ser289Leu
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2090C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13785
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16382
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser316Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS

1-54694484-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694484
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694484
    reference: chr 1
allele count: 10
allele frequency: 1.118468146027201e-4
allele num: 89408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.657G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.24G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.943G>A
  hgvsp: ENSP00000360371.3:p.Gly315Ser
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.990G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2094G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.613G>A
  hgvsp: ENSP00000414361.2:p.Gly205Ser
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.883G>A
  hgvsp: ENSP00000350067.4:p.Gly295Ser
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.862G>A
  hgvsp: ENSP00000360370.3:p.Gly288Ser
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13938
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28303
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly315Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

1-54694485-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694485
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694485
    reference: chr 1
allele count: 1
allele frequency: 1.118067978533095e-5
allele num: 89440
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.861C>T
  hgvsp: ENST00000371319.3:c.861C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.942C>T
  hgvsp: ENST00000371320.3:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.882C>T
  hgvsp: ENST00000357475.4:c.882C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.612C>T
  hgvsp: ENST00000417664.2:c.612C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.656C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.23C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2095C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.989C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27449
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro314Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

1-54694489-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694489
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694489
    reference: chr 1
allele count: 5
allele frequency: 5.554197862744663e-5
allele num: 90022
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.857G>C
  hgvsp: ENSP00000360370.3:p.Gly286Ala
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.652G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2099G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.19G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.985G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.938G>C
  hgvsp: ENSP00000360371.3:p.Gly313Ala
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.608G>C
  hgvsp: ENSP00000414361.2:p.Gly203Ala
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.878G>C
  hgvsp: ENSP00000350067.4:p.Gly293Ala
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27804
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly313Ala
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

1-54694497-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694497
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694497
    reference: chr 1
allele count: 1
allele frequency: 1.123747022070391e-5
allele num: 88988
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.977C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.644C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2107C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.600C>T
  hgvsp: ENST00000417664.2:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.870C>T
  hgvsp: ENST00000357475.4:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.930C>T
  hgvsp: ENST00000371320.3:c.930C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.849C>T
  hgvsp: ENST00000371319.3:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.11C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19226
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 9.75e1
  variant carriers: 1
hgvs: c.930C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

1-54694505-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694505
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694505
    reference: chr 1
allele count: 2
allele frequency: 2.285714285714286e-5
allele num: 87500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.642-6C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.975-6C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000528930
  gene symbol: SSBP3
  hgvsc: ENST00000528930.1:n.3C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.847-6C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.598-6C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2115C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.868-6C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.928-6C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25962
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
hgvs: c.928-6C>T
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-54694517-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694517
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694517
    reference: chr 1
allele count: 2
allele frequency: 2.411672494875196e-5
allele num: 82930
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.975-18C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.642-18C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2127C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.928-18C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.598-18C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.868-18C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.847-18C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17251
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3896
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16716
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25556
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

1-54694518-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694518
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694518
    reference: chr 1
allele count: 1
allele frequency: 1.213356629780625e-5
allele num: 82416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.847-19C>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.928-19C>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.868-19C>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.598-19C>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.642-19C>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.975-19C>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2128C>A
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17871
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12428
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3751
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

1-54694520-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694520
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694520
    reference: chr 1
allele count: 1
allele frequency: 1.234049904978157e-5
allele num: 81034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.975-21T>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2130T>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.598-21T>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.868-21T>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.847-21T>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.642-21T>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.928-21T>A
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4585
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26019
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/1-54694532-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694532
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694532
    reference: chr 1
allele count: 1
allele frequency: 1.381368106973146e-5
allele num: 72392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.868-33G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.975-33G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.598-33G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.847-33G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2142G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.642-33G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.928-33G>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20940
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6791
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22992
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6229
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5601
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP

1-54694532-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694532
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694532
    reference: chr 1
allele count: 4
allele frequency: 5.525472427892585e-5
allele num: 72392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.975-33G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.847-33G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.868-33G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2142G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.642-33G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.598-33G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.928-33G>A
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5696
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20940
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6791
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5455
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6229
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3235
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5601
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22992
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6116
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

1-54694533-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694533
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694533
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 72730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.975-34C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.847-34C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.598-34C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2143C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.868-34C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.642-34C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.928-34C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17515
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5497
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3212
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23524
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

1-54694535-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694535
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694535
    reference: chr 1
allele count: 59
allele frequency: 8.3281576421433e-4
allele num: 70844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.975-36C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.928-36C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.642-36C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2145C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.868-36C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.598-36C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.847-36C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17983
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20544
  bin: 1.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2608
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2701
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 9.75e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 6491
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22403
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

1-54694536-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694536
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694536
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 70322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.598-37G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.868-37G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.975-37G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.928-37G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.847-37G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2146G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.642-37G>A
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 20320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18290
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6089
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22148
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5527
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2788
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4857
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-54694539-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694539
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694539
    reference: chr 1
allele count: 7
allele frequency: 1.021539898429747e-4
allele num: 68524
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.598-40A>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.868-40A>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.642-40A>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.975-40A>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.847-40A>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2149A>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.928-40A>C
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7307
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19689
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6268
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18991
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4325
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3519
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

1-54694551-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694551
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694551
    reference: chr 1
allele count: 2
allele frequency: 3.256056264652253e-5
allele num: 61424
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.868-52G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.598-52G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.928-52G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2161G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.975-52G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.642-52G>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.847-52G>C
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17482
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6868
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15409
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6766
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8065
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3650
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

1-54694551-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54694551
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54694551
    reference: chr 1
allele count: 2
allele frequency: 3.256056264652253e-5
allele num: 61424
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.598-52G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.975-52G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.928-52G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.868-52G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-2161G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.642-52G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.847-52G>A
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6868
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17482
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6766
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15409
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6313
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4165
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5141
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-54703692-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703692
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703692
    reference: chr 1
allele count: 6
allele frequency: 9.52683391552874e-4
allele num: 6298
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+1110C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+1110C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+1110C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+1110C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11302C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+1110C>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+1110C>G
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3014
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ

1-54703694-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703694
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703694
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 6310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+1108T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+1108T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+1108T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+1108T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11304T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+1108T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+1108T>C
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-54703702-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703702
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703702
    reference: chr 1
allele count: 751
allele frequency: 1.111604499703967e-1
allele num: 6756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+1100G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+1100G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+1100G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11312G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+1100G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+1100G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+1100G>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 1.25e1
  variant carriers: 323
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 2.5e0
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 2.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 2.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3410
  bin: 7.5e0
  variant carriers: 719
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 3.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 2.25e1
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 1.75e1
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.25e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 6.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.75e1
  variant carriers: 38
num of homozygotes: 47
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

1-54703706-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703706
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703706
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 6930
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+1096T>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+1096T>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+1096T>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+1096T>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11316T>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+1096T>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+1096T>A
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2725
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

1-54703733-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703733
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703733
    reference: chr 1
allele count: 1
allele frequency: 1.171508903467666e-4
allele num: 8536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+1069G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+1069G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+1069G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11343G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+1069G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000198711
  ensembl protein: ENSP00000354968
  ensembl transcript: ENST00000361350
  gene symbol: SSBP3-AS1
  hgvsc: ENST00000361350.4:c.-7C>T
  variant of: http://identifiers.org/hgnc/32328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+1069G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+1069G>A
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

1-54703768-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703768
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703768
    reference: chr 1
allele count: 242
allele frequency: 1.612258494337108e-2
allele num: 15010
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+1034C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198711
  ensembl protein: ENSP00000354968
  ensembl transcript: ENST00000361350
  gene symbol: SSBP3-AS1
  hgvsc: ENST00000361350.4:c.29G>A
  hgvsp: ENSP00000354968.4:p.Arg10Lys
  variant of: http://identifiers.org/hgnc/32328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11378C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+1034C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+1034C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+1034C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+1034C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+1034C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4725
  bin: 2.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 2.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 2.25e1
  variant carriers: 3
hgvs: p.Arg10Lys
num of homozygotes: 8
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

1-54703801-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703801
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703801
    reference: chr 1
allele count: 123
allele frequency: 7.564575645756457e-3
allele num: 16260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+1001G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198711
  ensembl protein: ENSP00000354968
  ensembl transcript: ENST00000361350
  gene symbol: SSBP3-AS1
  hgvsc: ENST00000361350.4:c.62C>T
  hgvsp: ENSP00000354968.4:p.Thr21Met
  variant of: http://identifiers.org/hgnc/32328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+1001G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+1001G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+1001G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11411G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+1001G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+1001G>A
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5882
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr21Met
num of homozygotes: 3
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-54703864-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703864
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703864
    reference: chr 1
allele count: 1
allele frequency: 6.141751627564181e-5
allele num: 16282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11474G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+938G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198711
  ensembl protein: ENSP00000354968
  ensembl transcript: ENST00000361350
  gene symbol: SSBP3-AS1
  hgvsc: ENST00000361350.4:c.125C>A
  hgvsp: ENSP00000354968.4:p.Ala42Glu
  variant of: http://identifiers.org/hgnc/32328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+938G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+938G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+938G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+938G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+938G>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5905
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala42Glu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

1-54703869-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703869
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703869
    reference: chr 1
allele count: 1
allele frequency: 6.144770800049158e-5
allele num: 16274
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+933G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198711
  ensembl protein: ENSP00000354968
  ensembl transcript: ENST00000361350
  gene symbol: SSBP3-AS1
  hgvsc: ENST00000361350.4:c.130C>T
  hgvsp: ENSP00000354968.4:p.Arg44Cys
  variant of: http://identifiers.org/hgnc/32328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11479G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+933G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+933G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+933G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+933G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+933G>A
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5895
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg44Cys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

1-54703870-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703870
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703870
    reference: chr 1
allele count: 1
allele frequency: 6.140243153628883e-5
allele num: 16286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+932C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+932C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+932C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+932C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+932C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+932C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11480C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198711
  ensembl protein: ENSP00000354968
  ensembl transcript: ENST00000361350
  gene symbol: SSBP3-AS1
  hgvsc: ENST00000361350.4:c.131G>A
  hgvsp: ENSP00000354968.4:p.Arg44His
  variant of: http://identifiers.org/hgnc/32328
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg44His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

1-54703871-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703871
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703871
    reference: chr 1
allele count: 3
allele frequency: 1.842299189388357e-4
allele num: 16284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+931G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198711
  ensembl protein: ENSP00000354968
  ensembl transcript: ENST00000361350
  gene symbol: SSBP3-AS1
  hgvsc: ENST00000361350.4:c.132C>T
  hgvsp: ENST00000361350.4:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+931G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+931G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+931G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11481G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+931G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+931G>A
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5912
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg44Arg
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-54703872-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703872
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703872
    reference: chr 1
allele count: 7
allele frequency: 4.297642436149312e-4
allele num: 16288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+930C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198711
  ensembl protein: ENSP00000354968
  ensembl transcript: ENST00000361350
  gene symbol: SSBP3-AS1
  hgvsc: ENST00000361350.4:c.133G>A
  hgvsp: ENSP00000354968.4:p.Ala45Thr
  variant of: http://identifiers.org/hgnc/32328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11482C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+930C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+930C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+930C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+930C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+930C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala45Thr
num of homozygotes: 1
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

1-54703875-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703875
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703875
    reference: chr 1
allele count: 2
allele frequency: 1.228803145736053e-4
allele num: 16276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+927G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198711
  ensembl protein: ENSP00000354968
  ensembl transcript: ENST00000361350
  gene symbol: SSBP3-AS1
  hgvsc: ENST00000361350.4:c.136C>T
  hgvsp: ENSP00000354968.4:p.Arg46Trp
  variant of: http://identifiers.org/hgnc/32328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+927G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+927G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11485G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+927G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+927G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+927G>A
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg46Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/1-54703887-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703887
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703887
    reference: chr 1
allele count: 1
allele frequency: 6.141751627564181e-5
allele num: 16282
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+915G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+915G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+915G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198711
  ensembl protein: ENSP00000354968
  ensembl transcript: ENST00000361350
  gene symbol: SSBP3-AS1
  hgvsc: ENST00000361350.4:c.148C>A
  hgvsp: ENSP00000354968.4:p.Arg50Ser
  variant of: http://identifiers.org/hgnc/32328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11497G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+915G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+915G>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+915G>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg50Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-54703888-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703888
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703888
    reference: chr 1
allele count: 1
allele frequency: 6.136475208640157e-5
allele num: 16296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+914C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11498C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+914C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+914C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+914C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+914C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+914C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198711
  ensembl protein: ENSP00000354968
  ensembl transcript: ENST00000361350
  gene symbol: SSBP3-AS1
  hgvsc: ENST00000361350.4:c.149G>A
  hgvsp: ENSP00000354968.4:p.Arg50His
  variant of: http://identifiers.org/hgnc/32328
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg50His
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

1-54703899-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703899
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703899
    reference: chr 1
allele count: 241
allele frequency: 1.480525863128148e-2
allele num: 16278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+903G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+903G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+903G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11509G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198711
  ensembl protein: ENSP00000354968
  ensembl transcript: ENST00000361350
  gene symbol: SSBP3-AS1
  hgvsc: ENST00000361350.4:c.160C>T
  hgvsp: ENSP00000354968.4:p.Arg54Trp
  variant of: http://identifiers.org/hgnc/32328
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+903G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+903G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+903G>A
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.75e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg54Trp
num of homozygotes: 8
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

1-54703917-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703917
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703917
    reference: chr 1
allele count: 5
allele frequency: 3.065603923973023e-4
allele num: 16310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+885G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+885G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+885G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+885G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+885G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11527G>A
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198711
  ensembl protein: ENSP00000354968
  ensembl transcript: ENST00000361350
  gene symbol: SSBP3-AS1
  hgvsc: ENST00000361350.4:c.178C>T
  hgvsp: ENSP00000354968.4:p.Arg60Trp
  variant of: http://identifiers.org/hgnc/32328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+885G>A
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg60Trp
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

1-54703918-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703918
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703918
    reference: chr 1
allele count: 94
allele frequency: 5.757687124831557e-3
allele num: 16326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+884C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+884C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+884C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+884C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198711
  ensembl protein: ENSP00000354968
  ensembl transcript: ENST00000361350
  gene symbol: SSBP3-AS1
  hgvsc: ENST00000361350.4:c.179G>A
  hgvsp: ENSP00000354968.4:p.Arg60Gln
  variant of: http://identifiers.org/hgnc/32328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+884C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+884C>T
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11528C>T
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6020
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg60Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

1-54703944-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703944
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703944
    reference: chr 1
allele count: 3
allele frequency: 1.832396774981676e-4
allele num: 16372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+858T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198711
  ensembl protein: ENSP00000354968
  ensembl transcript: ENST00000361350
  gene symbol: SSBP3-AS1
  hgvsc: ENST00000361350.4:c.205A>G
  hgvsp: ENSP00000354968.4:p.Lys69Glu
  variant of: http://identifiers.org/hgnc/32328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+858T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11554T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+858T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+858T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+858T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+858T>C
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys69Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

1-54703953-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703953
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703953
    reference: chr 1
allele count: 38
allele frequency: 2.317921190679517e-3
allele num: 16394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+849T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+849T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+849T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11563T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+849T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198711
  ensembl protein: ENSP00000354968
  ensembl transcript: ENST00000361350
  gene symbol: SSBP3-AS1
  hgvsc: ENST00000361350.4:c.214A>G
  hgvsp: ENSP00000354968.4:p.Thr72Ala
  variant of: http://identifiers.org/hgnc/32328
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+849T>C
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+849T>C
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr72Ala
num of homozygotes: 3
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/1-54703961-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54703961
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 54703961
    reference: chr 1
allele count: 2
allele frequency: 1.21921482565228e-4
allele num: 16404
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198711
  ensembl protein: ENSP00000354968
  ensembl transcript: ENST00000361350
  gene symbol: SSBP3-AS1
  hgvsc: ENST00000361350.4:c.222A>C
  hgvsp: ENST00000361350.4:c.222A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/32328
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360371
  ensembl transcript: ENST00000371320
  gene symbol: SSBP3
  hgvsc: ENST00000371320.3:c.927+841T>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000426150
  gene symbol: SSBP3
  hgvsc: ENST00000426150.1:n.641+841T>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000533946
  gene symbol: SSBP3
  hgvsc: ENST00000533946.1:n.361-11571T>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000360370
  ensembl transcript: ENST00000371319
  gene symbol: SSBP3
  hgvsc: ENST00000371319.3:c.846+841T>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000350067
  ensembl transcript: ENST00000357475
  gene symbol: SSBP3
  hgvsc: ENST00000357475.4:c.867+841T>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl protein: ENSP00000414361
  ensembl transcript: ENST00000417664
  gene symbol: SSBP3
  hgvsc: ENST00000417664.2:c.597+841T>G
  variant of: http://identifiers.org/hgnc/15674
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157216
  ensembl transcript: ENST00000326956
  gene symbol: SSBP3
  hgvsc: ENST00000326956.7:n.974+841T>G
  variant of: http://identifiers.org/hgnc/15674
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser74Ser
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4771
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37158
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2703
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9534
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50159168718842e-5
allele num: 66596
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.263e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

DP
type: SiteQuality
SIO_000300: 1.894982e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

FS
type: SiteQuality
SIO_000300: 5.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.982e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.91e0

MQ
type: SiteQuality
SIO_000300: 5.84e1

GenotypeQuality
all individuals: 290
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4769
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2927
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9490
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.466e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

FS
type: SiteQuality
SIO_000300: 2.871e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.993e0

QD
type: SiteQuality
SIO_000300: 7.54e0

DP
type: SiteQuality
SIO_000300: 1.892683e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2922
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1656
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4767
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 37031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2684
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.892466e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.187e1

FS
type: SiteQuality
SIO_000300: 1.221e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.153e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.202011444425178e-4
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504664459825459e-5
allele num: 66460
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.88892e6

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e0

FS
type: SiteQuality
SIO_000300: 3.766e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

QD
type: SiteQuality
SIO_000300: 1.308e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: -2.55e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 1.619995371441796e-3
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

DP
type: SiteQuality
SIO_000300: 1.885551e6

QD
type: SiteQuality
SIO_000300: 1.199e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

FS
type: SiteQuality
SIO_000300: 2.886e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507431637975218e-5
allele num: 66338
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.820000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.878032e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.286e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e0

GenotypeQuality
all individuals: 673
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 941
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 9307
bin: 6.75e1
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GenotypeQuality
all individuals: 2857
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66300
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.021e1

FS
type: SiteQuality
SIO_000300: 6.845e0

VQSLOD
type: SiteQuality
SIO_000300: 4.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e-1

DP
type: SiteQuality
SIO_000300: 1.874414e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 980
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 48
allele frequency: 4.676539360872954e-3
allele num: 10264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65950
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.747030048916841e-4
allele num: 11448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.222942399412988e-4
allele num: 16354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

VQSLOD
type: SiteQuality
SIO_000300: 3.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 1.353e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

DP
type: SiteQuality
SIO_000300: 1.833368e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2727
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169864295741694e-4
allele num: 8548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.702e1

MQRankSum
type: SiteQuality
SIO_000300: 2.14e0

FS
type: SiteQuality
SIO_000300: 2.319e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.434e0

VQSLOD
type: SiteQuality
SIO_000300: -1.236e0

DP
type: SiteQuality
SIO_000300: 1.807324e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.69e-1

GenotypeQuality
all individuals: 819
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1538
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.175088131609871e-4
allele num: 8510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65628
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.443e-1

MQ
type: SiteQuality
SIO_000300: 5.909e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.268e0

DP
type: SiteQuality
SIO_000300: 1.746998e6

FS
type: SiteQuality
SIO_000300: 6.597e0

QD
type: SiteQuality
SIO_000300: 1.345e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 794
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GenotypeQuality
all individuals: 817
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.181474480151229e-4
allele num: 8464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65418
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

DP
type: SiteQuality
SIO_000300: 1.647516e6

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.053e-1

FS
type: SiteQuality
SIO_000300: 7.888e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.333e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.867e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1839
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variant carriers: 0

GenotypeQuality
all individuals: 4711
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 167
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GenotypeQuality
all individuals: 4344
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5372
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.19019281123542e-4
allele num: 8402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65038
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.97e-1

DP
type: SiteQuality
SIO_000300: 1.559731e6

MQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 4.196e0

VQSLOD
type: SiteQuality
SIO_000300: -1.87e0

QD
type: SiteQuality
SIO_000300: 1.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

GenotypeQuality
all individuals: 6416
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1458
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.097125867195243e-5
allele num: 64576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.523016e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

QD
type: SiteQuality
SIO_000300: 8.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.92e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

FS
type: SiteQuality
SIO_000300: 3.119e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.122e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

GenotypeQuality
all individuals: 631
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6022
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6479
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.553180914512922e-5
allele num: 64384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9984
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16006
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.907e1

QD
type: SiteQuality
SIO_000300: 1.53e1

DP
type: SiteQuality
SIO_000300: 1.511876e6

MQRankSum
type: SiteQuality
SIO_000300: -1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.282e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.914e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 10367
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 805
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variant carriers: 0

GenotypeQuality
all individuals: 2190
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 13
allele frequency: 8.122969257685578e-4
allele num: 16004
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.790831749197545e-5
allele num: 64178
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.790510295434199e-4
allele num: 11170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6246
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.004217714400482e-4
allele num: 9958
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

DP
type: SiteQuality
SIO_000300: 1.507145e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 1.454e1

GenotypeQuality
all individuals: 3680
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 884
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4127
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GenotypeQuality
all individuals: 2183
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15998
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560549313358302e-5
allele num: 64080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.501842e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.298e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.066e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

GenotypeQuality
all individuals: 5612
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6455
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variant carriers: 0

GenotypeQuality
all individuals: 3680
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variant carriers: 0

GenotypeQuality
all individuals: 278
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1552
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variant carriers: 0

GenotypeQuality
all individuals: 91
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variant carriers: 0

GenotypeQuality
all individuals: 4127
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variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 8.25e1
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GenotypeQuality
all individuals: 4733
bin: 9.75e1
variant carriers: 29

GenotypeQuality
all individuals: 8211
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 9.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.121098626716604e-5
allele num: 64080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.006441223832528e-4
allele num: 9936
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.375546943367921e-4
allele num: 15998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 19
allele frequency: 2.306945118989801e-3
allele num: 8236
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.066e1

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.501842e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.298e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 985
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GenotypeQuality
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GenotypeQuality
all individuals: 202
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variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.59e0

VQSLOD
type: SiteQuality
SIO_000300: 1.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 5.00734e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.49e-2

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 89
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GenotypeQuality
all individuals: 646
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GenotypeQuality
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GenotypeQuality
all individuals: 94
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GenotypeQuality
all individuals: 987
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 1.022494887525562e-3
allele num: 2934
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 958
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.539999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.39e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.587e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

MQ
type: SiteQuality
SIO_000300: 5.344e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

FS
type: SiteQuality
SIO_000300: 3.531e0

DP
type: SiteQuality
SIO_000300: 5.20936e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

GenotypeQuality
all individuals: 20005
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 986
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 76
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GenotypeQuality
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GenotypeQuality
all individuals: 2174
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GenotypeQuality
all individuals: 95
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 3.389830508474576e-4
allele num: 2950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13038
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.291e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.25e-2

DP
type: SiteQuality
SIO_000300: 5.29784e5

FS
type: SiteQuality
SIO_000300: 8.512e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.765e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.49e-1

MQ
type: SiteQuality
SIO_000300: 4.423e1

GenotypeQuality
all individuals: 232
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2238
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 7.25e1
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GenotypeQuality
all individuals: 89
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GenotypeQuality
all individuals: 283
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GenotypeQuality
all individuals: 758
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GenotypeQuality
all individuals: 2564
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GenotypeQuality
all individuals: 209
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 4168
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.154574132492114e-4
allele num: 3170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

DP
type: SiteQuality
SIO_000300: 5.77571e5

VQSLOD
type: SiteQuality
SIO_000300: 3.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.65e-2

FS
type: SiteQuality
SIO_000300: 3.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

QD
type: SiteQuality
SIO_000300: 1.384e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 2.021835826930853e-4
allele num: 14838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1180
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.755633450175263e-4
allele num: 7988
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.85781e5

VQSLOD
type: SiteQuality
SIO_000300: 4.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.48e0

MQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

QD
type: SiteQuality
SIO_000300: 1.101e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.66e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 3.041362530413625e-4
allele num: 3288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.176e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.34e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.03365e5

QD
type: SiteQuality
SIO_000300: 6.62e0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 290
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 2.381492401905194e-3
allele num: 8818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 49
allele frequency: 2.136006974716652e-2
allele num: 2294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.568e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.76842e5

QD
type: SiteQuality
SIO_000300: 1.192e1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2064
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.112099644128114e-4
allele num: 8992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

DP
type: SiteQuality
SIO_000300: 6.92713e5

QD
type: SiteQuality
SIO_000300: 6.88e0

FS
type: SiteQuality
SIO_000300: 6.263e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.329e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.41e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.29e-1

MQ
type: SiteQuality
SIO_000300: 5.561e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1936
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36418
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.784439685938615e-4
allele num: 5604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.671e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.913e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

DP
type: SiteQuality
SIO_000300: 9.07021e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5840
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 38710
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5080
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2118
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.39196e5

QD
type: SiteQuality
SIO_000300: 1.031e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
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FS
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 43838
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5884
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.382229673093043e-5
allele num: 11930
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Other
type: Population
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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FS
type: SiteQuality
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QD
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DP
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele frequency: 0.0e0
allele num: 2838
num of homozygotes: 0

East Asian
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allele frequency: 1.5625e-4
allele num: 6400
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African
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Latino
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 47024
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Other
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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MQRankSum
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QD
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InbreedingCoeff
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FS
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 542
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.064409578860446e-5
allele num: 48440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

DP
type: SiteQuality
SIO_000300: 1.090336e6

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -2.304e0

MQ
type: SiteQuality
SIO_000300: 5.788e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 7.04e0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6718
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.4589774078478e-4
allele num: 6728
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

FS
type: SiteQuality
SIO_000300: 1.6e0

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.066e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.756e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.529e0

DP
type: SiteQuality
SIO_000300: 1.098565e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.999360204734485e-5
allele num: 50016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.898e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.545e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQ
type: SiteQuality
SIO_000300: 5.513e1

QD
type: SiteQuality
SIO_000300: 3.28e0

DP
type: SiteQuality
SIO_000300: 1.10683e6

GenotypeQuality
all individuals: 30739
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.545117428924598e-4
allele num: 12944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.991537939568116e-5
allele num: 50106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3370
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.84e-1

MQ
type: SiteQuality
SIO_000300: 5.773e1

QD
type: SiteQuality
SIO_000300: 9.26e0

MQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.55e-1

DP
type: SiteQuality
SIO_000300: 1.109303e6

GenotypeQuality
all individuals: 577
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 544
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GenotypeQuality
all individuals: 115
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50670
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.427755568246716e-4
allele num: 7004
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.662835249042145e-5
allele num: 13050
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

QD
type: SiteQuality
SIO_000300: 6.78e0

MQRankSum
type: SiteQuality
SIO_000300: -5.84e-1

DP
type: SiteQuality
SIO_000300: 1.119083e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

MQ
type: SiteQuality
SIO_000300: 5.62e1

VQSLOD
type: SiteQuality
SIO_000300: -4.838e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.377e0

FS
type: SiteQuality
SIO_000300: 2.093e0

GenotypeQuality
all individuals: 219
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2354
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GenotypeQuality
all individuals: 1800
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GenotypeQuality
all individuals: 297
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 99
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GenotypeQuality
all individuals: 1005
bin: 9.75e1
variant carriers: 8

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.845562221196739e-4
allele num: 13002
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.443418013856813e-4
allele num: 6928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.963977575444316e-5
allele num: 50302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.888503755054881e-4
allele num: 3462
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.033e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.766e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.01e-1

QD
type: SiteQuality
SIO_000300: 9.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

DP
type: SiteQuality
SIO_000300: 1.10258e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 100
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.985545230720356e-5
allele num: 50364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3452
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.743e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
SIO_000300: 1.103171e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.026e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.936e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.338e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.89e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3520
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.300613496932515e-4
allele num: 13040
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6906
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6988
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.949291102247146e-5
allele num: 50642
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.105839e6

FS
type: SiteQuality
SIO_000300: 5.821e0

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e-1

MQ
type: SiteQuality
SIO_000300: 5.694e1

QD
type: SiteQuality
SIO_000300: 1.151e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3478
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.698229407236336e-5
allele num: 12990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6772
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.947e0

VQSLOD
type: SiteQuality
SIO_000300: -1.523e0

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.738e1

DP
type: SiteQuality
SIO_000300: 1.078962e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 114
bin: 9.25e1
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GenotypeQuality
all individuals: 197
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7928
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.005710850616171e-4
allele num: 6654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49258
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.44e-1

FS
type: SiteQuality
SIO_000300: 2.197e0

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e-2

MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
SIO_000300: 1.044803e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 7.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.48e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7438
num of homozygotes: 0

African
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allele count: 2
allele frequency: 3.137747097583935e-4
allele num: 6374
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46602
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12538
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.95e-1

FS
type: SiteQuality
SIO_000300: 1.026e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

DP
type: SiteQuality
SIO_000300: 9.28306e5

BaseQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

QD
type: SiteQuality
SIO_000300: 1.404e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.159920514925051e-5
allele num: 46298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3064
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6276
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.191e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.763e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

DP
type: SiteQuality
SIO_000300: 9.16728e5

QD
type: SiteQuality
SIO_000300: 5.89e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6156
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.064516129032258e-5
allele num: 12400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2954
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.023e0

FS
type: SiteQuality
SIO_000300: 1.859e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.13e-1

MQ
type: SiteQuality
SIO_000300: 5.682e1

VQSLOD
type: SiteQuality
SIO_000300: -1.274e0

QD
type: SiteQuality
SIO_000300: 2.049e1

DP
type: SiteQuality
SIO_000300: 8.76584e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6322
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.588114050154586e-5
allele num: 11644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2348
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

QD
type: SiteQuality
SIO_000300: 1.149e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

FS
type: SiteQuality
SIO_000300: 1.1679e1

MQ
type: SiteQuality
SIO_000300: 5.855e1

VQSLOD
type: SiteQuality
SIO_000300: -6.825e-1

DP
type: SiteQuality
SIO_000300: 7.72978e5

GenotypeQuality
all individuals: 2519
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 710
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 337
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GenotypeQuality
all individuals: 177
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11644
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.675119441381845e-4
allele num: 5442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.679175864606328e-4
allele num: 5436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40724
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.825e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

QD
type: SiteQuality
SIO_000300: 1.149e1

FS
type: SiteQuality
SIO_000300: 1.1679e1

DP
type: SiteQuality
SIO_000300: 7.72978e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 84
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5500
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40886
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.70161e5

FS
type: SiteQuality
SIO_000300: 5.735e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.803e1

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 2274
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African
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allele frequency: 0.0e0
allele num: 5324
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 39882
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 456
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East Asian
type: Population
allele count: 54
allele frequency: 1.024667931688805e-2
allele num: 5270
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 8.207485226526593e-4
allele num: 6092
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.57408e5

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.883e1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5278
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 39608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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allele num: 5230
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6030
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2230
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele num: 456
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MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

FS
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MQ
type: SiteQuality
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QD
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BaseQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 3.07e-1

ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 1.719986240110079e-4
allele num: 5814
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.557147306135161e-4
allele num: 38532
num of homozygotes: 0

East Asian
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African
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Other
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South Asian
type: Population
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2122
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.906e1

ClippingRankSum
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ReadPosRankSum
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FS
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 7.39727e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.55e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.35e1

GenotypeQuality
all individuals: 1249
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6313
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4165
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 116
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.893685977197755e-5
allele num: 34558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.025111381125962e-4
allele num: 4938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1762
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.087e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 1.028e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.83e-2

DP
type: SiteQuality
SIO_000300: 7.18858e5

GenotypeQuality
all individuals: 322
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8065
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3650
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 4.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.243852837862822e-5
allele num: 10818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.264492753623188e-4
allele num: 4416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34558
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

DP
type: SiteQuality
SIO_000300: 7.18858e5

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.087e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

QD
type: SiteQuality
SIO_000300: 1.028e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.83e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 2.150537634408602e-3
allele num: 2790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1242
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.417e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

QD
type: SiteQuality
SIO_000300: 1.193e1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.99e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.311e0

DP
type: SiteQuality
SIO_000300: 1.24177e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 381
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3022
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 907
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.85e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.860000000000001e-1

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.24445e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
all individuals: 118
bin: 7.25e1
variant carriers: 20

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 9

GenotypeQuality
all individuals: 702
bin: 6.25e1
variant carriers: 31

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 59

GenotypeQuality
all individuals: 2532
bin: 7.5e0
variant carriers: 28

GenotypeQuality
all individuals: 1184
bin: 9.75e1
variant carriers: 693

GenotypeQuality
all individuals: 550
bin: 1.25e1
variant carriers: 25

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 26

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 104

GenotypeQuality
all individuals: 163
bin: 7.75e1
variant carriers: 59

European (Non-Finnish)
type: Population
allele count: 176
allele frequency: 6.15815255423373e-2
allele num: 2858
num of homozygotes: 3

Other
type: Population
allele count: 12
allele frequency: 1.276595744680851e-1
allele num: 94
num of homozygotes: 1

African
type: Population
allele count: 83
allele frequency: 1.089238845144357e-1
allele num: 762
num of homozygotes: 2

East Asian
type: Population
allele count: 23
allele frequency: 5.927835051546392e-2
allele num: 388
num of homozygotes: 0

Latino
type: Population
allele count: 27
allele frequency: 1.25e-1
allele num: 216
num of homozygotes: 1

South Asian
type: Population
allele count: 332
allele frequency: 2.818336162988115e-1
allele num: 1178
num of homozygotes: 37

European (Finnish)
type: Population
allele count: 98
allele frequency: 7.777777777777778e-2
allele num: 1260
num of homozygotes: 3

VQSLOD
type: SiteQuality
SIO_000300: 5.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.59e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

DP
type: SiteQuality
SIO_000300: 1.29717e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 1.261e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

QD
type: SiteQuality
SIO_000300: 1.352e1

GenotypeQuality
all individuals: 488
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 406
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1286
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 7.74e0

DP
type: SiteQuality
SIO_000300: 1.2792e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.19e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeQuality
all individuals: 552
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1671
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.067484662576687e-4
allele num: 3260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

DP
type: SiteQuality
SIO_000300: 1.45973e5

QD
type: SiteQuality
SIO_000300: 1.631e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.48e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.466e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.466e0

VQSLOD
type: SiteQuality
SIO_000300: -1.458e0

GenotypeQuality
all individuals: 5160
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 130
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 9.75e1
variant carriers: 229

GenotypeQuality
all individuals: 40
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 78
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 124
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 149
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 5.992010652463382e-3
allele num: 1502
num of homozygotes: 0

East Asian
type: Population
allele count: 33
allele frequency: 6.846473029045644e-2
allele num: 482
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 61
allele frequency: 1.248465002046664e-2
allele num: 4886
num of homozygotes: 1

African
type: Population
allele count: 40
allele frequency: 4.484304932735426e-2
allele num: 892
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 5.555555555555556e-3
allele num: 180
num of homozygotes: 0

South Asian
type: Population
allele count: 98
allele frequency: 1.444149720011789e-2
allele num: 6786
num of homozygotes: 2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.81e0

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.409e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.04e-1

DP
type: SiteQuality
SIO_000300: 2.05766e5

QD
type: SiteQuality
SIO_000300: 1.34e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 192
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 81
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 9.75e1
variant carriers: 119

GenotypeQuality
all individuals: 579
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 74
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 19
allele frequency: 2.489517819706499e-3
allele num: 7632
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 4.901960784313725e-3
allele num: 204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 6.896551724137931e-3
allele num: 290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 69
allele frequency: 1.319816373374139e-2
allele num: 5228
num of homozygotes: 1

African
type: Population
allele count: 31
allele frequency: 3.452115812917594e-2
allele num: 898
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 6.57030223390276e-4
allele num: 1522
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-2

DP
type: SiteQuality
SIO_000300: 2.19141e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.57e0

QD
type: SiteQuality
SIO_000300: 1.379e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.305142260506395e-4
allele num: 7662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1464
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.919e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.83e-2

QD
type: SiteQuality
SIO_000300: 1.015e1

VQSLOD
type: SiteQuality
SIO_000300: -1.011e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-1

FS
type: SiteQuality
SIO_000300: 3.663e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

DP
type: SiteQuality
SIO_000300: 2.15745e5

GenotypeQuality
all individuals: 1471
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.305142260506395e-4
allele num: 7662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

FS
type: SiteQuality
SIO_000300: 8.77e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.93e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.457e0

VQSLOD
type: SiteQuality
SIO_000300: -1.908e0

DP
type: SiteQuality
SIO_000300: 2.15646e5

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 614
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.91e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

QD
type: SiteQuality
SIO_000300: 1.641e1

MQ
type: SiteQuality
SIO_000300: 5.934e1

DP
type: SiteQuality
SIO_000300: 2.15538e5

GenotypeQuality
all individuals: 528
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.305142260506395e-4
allele num: 7662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.78931413414172e-4
allele num: 5278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1460
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.78e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 2.15745e5

QD
type: SiteQuality
SIO_000300: 1.173e1

GenotypeQuality
all individuals: 230
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5936
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.05761316872428e-3
allele num: 486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 7.830853563038371e-4
allele num: 7662
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1464
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 2.16036e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.48e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 5.28e0

QD
type: SiteQuality
SIO_000300: 1.452e1

GenotypeQuality
all individuals: 1508
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5280
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.305142260506395e-4
allele num: 7662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.05761316872428e-3
allele num: 486
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.195e1

FS
type: SiteQuality
SIO_000300: 8.169e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.028e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.91e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.15817e5

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.304801670146138e-4
allele num: 7664
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.384e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.111e0

DP
type: SiteQuality
SIO_000300: 2.16274e5

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

FS
type: SiteQuality
SIO_000300: 2.365e0

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.94e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.66e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5288
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.304801670146138e-4
allele num: 7664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1458
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.316e0

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.97e-2

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 1.082e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 233

GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
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allele num: 486
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

South Asian
type: Population
allele count: 240
allele frequency: 3.131524008350731e-2
allele num: 7664
num of homozygotes: 8

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.8910741301059e-4
allele num: 5288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

MQ
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
all individuals: 6040
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1466
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.219206680584551e-4
allele num: 7664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.888930865130336e-4
allele num: 5294
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.523e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

DP
type: SiteQuality
SIO_000300: 2.1845e5

QD
type: SiteQuality
SIO_000300: 8.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.05e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 9.75e1
variant carriers: 94

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 1.03448275862069e-2
allele num: 290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 15
allele frequency: 1.013513513513514e-2
allele num: 1480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 1.456310679611651e-2
allele num: 206
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 1.435281837160752e-3
allele num: 7664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 59
allele frequency: 1.11404833836858e-2
allele num: 5296
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.31858407079646e-3
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.02e-2

QD
type: SiteQuality
SIO_000300: 1.281e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.11e0

DP
type: SiteQuality
SIO_000300: 2.22265e5

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.914405010438414e-4
allele num: 7664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1526
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.02e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.239e1

VQSLOD
type: SiteQuality
SIO_000300: 3.28e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

DP
type: SiteQuality
SIO_000300: 2.19397e5

ClippingRankSum
type: SiteQuality
SIO_000300: 5.02e-1

GenotypeQuality
all individuals: 6170
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1562
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 645
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 8.25e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 3.448275862068965e-3
allele num: 290
num of homozygotes: 0

African
type: Population
allele count: 33
allele frequency: 3.650442477876106e-2
allele num: 904
num of homozygotes: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.886080724254998e-4
allele num: 5302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.914405010438414e-4
allele num: 7664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1544
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.429e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.42e-2

DP
type: SiteQuality
SIO_000300: 2.20318e5

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.78e0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0