http://identifiers.org/exac.variant/2-167992578-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 167992578
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 167992578
    reference: chr 2
allele count: 1
allele frequency: 8.808244516867789e-6
allele num: 113530
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254552
  ensembl transcript: ENST00000525330
  gene symbol: XIRP2-AS1
  hgvsc: ENST00000525330.1:n.154+4734G>T
  variant of: http://identifiers.org/hgnc/40679
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.562+6C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.562+6C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.562+6C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.562+6C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.562+6C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.562+6C>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6663
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 9.25e1
  variant carriers: 0
hgvs: c.562+6C>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

2-167992580-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 167992580
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 167992580
    reference: chr 2
allele count: 1
allele frequency: 8.820208862545865e-6
allele num: 113376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.562+8T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.562+8T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.562+8T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.562+8T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254552
  ensembl transcript: ENST00000525330
  gene symbol: XIRP2-AS1
  hgvsc: ENST00000525330.1:n.154+4732A>T
  variant of: http://identifiers.org/hgnc/40679
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.562+8T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.562+8T>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23634
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3080
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3384
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
hgvs: c.562+8T>A
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

2-167992593-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 167992593
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 167992593
    reference: chr 2
allele count: 1
allele frequency: 8.925065152975617e-6
allele num: 112044
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.562+21T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.562+21T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.562+21T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254552
  ensembl transcript: ENST00000525330
  gene symbol: XIRP2-AS1
  hgvsc: ENST00000525330.1:n.154+4719A>G
  variant of: http://identifiers.org/hgnc/40679
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.562+21T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.562+21T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.562+21T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6656
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4424
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3035
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3361
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

2-167992594-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 167992594
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 167992594
    reference: chr 2
allele count: 2
allele frequency: 1.787501787501788e-5
allele num: 111888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.562+22G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.562+22G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.562+22G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.562+22G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.562+22G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254552
  ensembl transcript: ENST00000525330
  gene symbol: XIRP2-AS1
  hgvsc: ENST00000525330.1:n.154+4718C>T
  variant of: http://identifiers.org/hgnc/40679
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.562+22G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14594
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4414
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

2-167992599-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 167992599
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 167992599
    reference: chr 2
allele count: 1
allele frequency: 8.98391878537418e-6
allele num: 111310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.562+27C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.562+27C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.562+27C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.562+27C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254552
  ensembl transcript: ENST00000525330
  gene symbol: XIRP2-AS1
  hgvsc: ENST00000525330.1:n.154+4713G>C
  variant of: http://identifiers.org/hgnc/40679
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.562+27C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.562+27C>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3002
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

2-167992605-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 167992605
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 167992605
    reference: chr 2
allele count: 2
allele frequency: 1.803621672318014e-5
allele num: 110888
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254552
  ensembl transcript: ENST00000525330
  gene symbol: XIRP2-AS1
  hgvsc: ENST00000525330.1:n.154+4707T>A
  variant of: http://identifiers.org/hgnc/40679
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.562+33A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.562+33A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.562+33A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.562+33A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.562+33A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.562+33A>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20981
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7980
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4297
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/2-167992618-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 167992618
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 167992618
    reference: chr 2
allele count: 3
allele frequency: 2.746045694200351e-5
allele num: 109248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.562+46C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.562+46C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.562+46C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.562+46C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.562+46C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254552
  ensembl transcript: ENST00000525330
  gene symbol: XIRP2-AS1
  hgvsc: ENST00000525330.1:n.154+4694G>T
  variant of: http://identifiers.org/hgnc/40679
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.562+46C>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11804
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10733
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4778
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14462
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1904
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6706
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6615
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3691
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

2-167992619-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 167992619
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 167992619
    reference: chr 2
allele count: 1
allele frequency: 9.159018885896942e-6
allele num: 109182
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.562+47A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.562+47A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.562+47A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254552
  ensembl transcript: ENST00000525330
  gene symbol: XIRP2-AS1
  hgvsc: ENST00000525330.1:n.154+4693T>C
  variant of: http://identifiers.org/hgnc/40679
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.562+47A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.562+47A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.562+47A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11409
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3535
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3205
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6615
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13366
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/2-167992621-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 167992621
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 167992621
    reference: chr 2
allele count: 1
allele frequency: 9.190669632189402e-6
allele num: 108806
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.562+49C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000254552
  ensembl transcript: ENST00000525330
  gene symbol: XIRP2-AS1
  hgvsc: ENST00000525330.1:n.154+4691G>T
  variant of: http://identifiers.org/hgnc/40679
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.562+49C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.562+49C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.562+49C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.562+49C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.562+49C>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10520
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3737
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3214
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2485
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum

2-168041025-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168041025
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168041025
    reference: chr 2
allele count: 1
allele frequency: 6.019020103527146e-5
allele num: 16614
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.563-26220G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.563-26220G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.563-27G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.563-26220G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.563-27G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.563-26220G>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3224
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD

2-168041031-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168041031
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168041031
    reference: chr 2
allele count: 7
allele frequency: 4.186602870813397e-4
allele num: 16720
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.563-26214C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.563-26214C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.563-26214C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.563-21C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.563-21C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.563-26214C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 84
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
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genotype quality: GenotypeQuality
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 105
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genotype quality: GenotypeQuality
  all individuals: 3487
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
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genotype quality: GenotypeQuality
  all individuals: 241
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

2-168041042-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168041042
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168041042
    reference: chr 2
allele count: 1
allele frequency: 5.887201224537855e-5
allele num: 16986
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.563-26203T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.563-26203T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.563-10T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.563-10T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.563-26203T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.563-26203T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

2-168041052-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168041052
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168041052
    reference: chr 2
allele count: 1
allele frequency: 5.815305885089556e-5
allele num: 17196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.563C>G
  hgvsp: ENSP00000415541.1:p.Ala188Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.563-26193C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.563-26193C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.563-26193C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.563C>G
  hgvsp: ENSP00000386619.1:p.Ala188Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.563-26193C>G
  variant of: http://identifiers.org/hgnc/14303
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala188Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

2-168041087-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168041087
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168041087
    reference: chr 2
allele count: 148
allele frequency: 8.409090909090909e-3
allele num: 17600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.598C>T
  hgvsp: ENSP00000415541.1:p.Leu200Phe
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.598C>T
  hgvsp: ENSP00000386619.1:p.Leu200Phe
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.563-26158C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.563-26158C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.563-26158C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.563-26158C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4561
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu200Phe
num of homozygotes: 4
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

2-168041098-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168041098
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168041098
    reference: chr 2
allele count: 4
allele frequency: 2.262699400384659e-4
allele num: 17678
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.563-26147T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.609T>C
  hgvsp: ENST00000409728.1:c.609T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.609T>C
  hgvsp: ENST00000420519.1:c.609T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.563-26147T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.563-26147T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.563-26147T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His203His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

2-168041107-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168041107
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168041107
    reference: chr 2
allele count: 2
allele frequency: 1.129305477131564e-4
allele num: 17710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.563-26138G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.618G>T
  hgvsp: ENSP00000386619.1:p.Leu206Phe
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.618G>T
  hgvsp: ENSP00000415541.1:p.Leu206Phe
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.563-26138G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.563-26138G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.563-26138G>T
  variant of: http://identifiers.org/hgnc/14303
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu206Phe
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

2-168041110-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168041110
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168041110
    reference: chr 2
allele count: 2
allele frequency: 1.130326664406013e-4
allele num: 17694
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.563-26135A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.621A>T
  hgvsp: ENST00000409728.1:c.621A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.621A>T
  hgvsp: ENST00000420519.1:c.621A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.563-26135A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.563-26135A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.563-26135A>T
  variant of: http://identifiers.org/hgnc/14303
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4623
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr207Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

2-168041152-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168041152
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168041152
    reference: chr 2
allele count: 2287
allele frequency: 1.318611623616236e-1
allele num: 17344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.661+2T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.563-26093T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.661+2T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.563-26093T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.563-26093T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.563-26093T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 2.75e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 270
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 2.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 2.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 3.25e1
  variant carriers: 246
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.5e0
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 284
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 9.75e1
  variant carriers: 231
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 2.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 7.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 1
hgvs: c.661+2T>C
num of homozygotes: 172
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

2-168041162-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168041162
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168041162
    reference: chr 2
allele count: 64
allele frequency: 3.779825183085282e-3
allele num: 16932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.661+12G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.563-26083G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.563-26083G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.563-26083G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.563-26083G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.661+12G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 9.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3520
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 1
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

2-168041186-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168041186
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168041186
    reference: chr 2
allele count: 3
allele frequency: 1.823929961089494e-4
allele num: 16448
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.661+36T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.563-26059T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.563-26059T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.563-26059T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.661+36T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.563-26059T>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP

2-168041195-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168041195
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168041195
    reference: chr 2
allele count: 1
allele frequency: 6.144770800049158e-5
allele num: 16274
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.563-26050T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.563-26050T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.661+45T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.563-26050T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.661+45T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.563-26050T>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-168067204-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067204
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067204
    reference: chr 2
allele count: 1
allele frequency: 8.312137383006666e-6
allele num: 120306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.563-41A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.662-41A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-104-41A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.563-41A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.563-41A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.563-41A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-104-41A>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.662-41A>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

2-168067218-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067218
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067218
    reference: chr 2
allele count: 1
allele frequency: 8.305233958440609e-6
allele num: 120406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.563-27G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.563-27G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.662-27G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-104-27G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-104-27G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.563-27G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.662-27G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.563-27G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2729
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4010
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

2-168067219-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067219
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067219
    reference: chr 2
allele count: 1
allele frequency: 8.304682179812978e-6
allele num: 120414
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-104-26T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.563-26T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.563-26T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.563-26T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.662-26T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.563-26T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-104-26T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.662-26T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9085
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5538
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

2-168067219-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067219
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067219
    reference: chr 2
allele count: 1
allele frequency: 8.304682179812978e-6
allele num: 120414
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.563-26T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.662-26T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.563-26T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.662-26T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-104-26T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.563-26T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.563-26T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-104-26T>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23677
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-168067264-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067264
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067264
    reference: chr 2
allele count: 1
allele frequency: 8.283082632032337e-6
allele num: 120728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.582G>A
  hgvsp: ENST00000409043.1:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-85G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-85G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.582G>A
  hgvsp: ENST00000295237.9:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.582G>A
  hgvsp: ENST00000409195.1:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.681G>A
  hgvsp: ENST00000409728.1:c.681G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.681G>A
  hgvsp: ENST00000420519.1:c.681G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.582G>A
  hgvsp: ENST00000409756.2:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9169
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32886
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3022
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5538
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Lys194Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

2-168067275-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067275
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067275
    reference: chr 2
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.593G>T
  hgvsp: ENSP00000386454.1:p.Gly198Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.692G>T
  hgvsp: ENSP00000386619.1:p.Gly231Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-74G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-74G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.593G>T
  hgvsp: ENSP00000295237.9:p.Gly198Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.593G>T
  hgvsp: ENSP00000386724.2:p.Gly198Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.692G>T
  hgvsp: ENSP00000415541.1:p.Gly231Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.593G>T
  hgvsp: ENSP00000386840.1:p.Gly198Val
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32905
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4013
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9180
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly198Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

2-168067288-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067288
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067288
    reference: chr 2
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.606C>T
  hgvsp: ENST00000409195.1:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.705C>T
  hgvsp: ENST00000420519.1:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.606C>T
  hgvsp: ENST00000409043.1:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.705C>T
  hgvsp: ENST00000409728.1:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.606C>T
  hgvsp: ENST00000409756.2:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.606C>T
  hgvsp: ENST00000295237.9:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-61C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-61C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4014
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp202Asp
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum

2-168067302-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067302
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067302
    reference: chr 2
allele count: 1
allele frequency: 8.281573498964803e-6
allele num: 120750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.620G>A
  hgvsp: ENSP00000386454.1:p.Gly207Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.719G>A
  hgvsp: ENSP00000386619.1:p.Gly240Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.620G>A
  hgvsp: ENSP00000295237.9:p.Gly207Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.620G>A
  hgvsp: ENSP00000386840.1:p.Gly207Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.719G>A
  hgvsp: ENSP00000415541.1:p.Gly240Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-47G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.620G>A
  hgvsp: ENSP00000386724.2:p.Gly207Asp
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4012
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly207Asp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-168067303-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067303
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067303
    reference: chr 2
allele count: 7
allele frequency: 5.797005432622234e-5
allele num: 120752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.621C>A
  hgvsp: ENST00000409043.1:c.621C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-46C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.720C>A
  hgvsp: ENST00000420519.1:c.720C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.720C>A
  hgvsp: ENST00000409728.1:c.720C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.621C>A
  hgvsp: ENST00000295237.9:c.621C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.621C>A
  hgvsp: ENST00000409195.1:c.621C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.621C>A
  hgvsp: ENST00000409756.2:c.621C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-46C>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 14936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32918
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5539
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly207Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

2-168067303-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067303
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067303
    reference: chr 2
allele count: 11
allele frequency: 9.109579965549225e-5
allele num: 120752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.621C>T
  hgvsp: ENST00000295237.9:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.621C>T
  hgvsp: ENST00000409043.1:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.720C>T
  hgvsp: ENST00000420519.1:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-46C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.621C>T
  hgvsp: ENST00000409756.2:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.720C>T
  hgvsp: ENST00000409728.1:c.720C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.621C>T
  hgvsp: ENST00000409195.1:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-46C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly207Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-168067303-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067303
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067303
    reference: chr 2
allele count: 6
allele frequency: 4.968861799390487e-5
allele num: 120752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.720C>G
  hgvsp: ENST00000420519.1:c.720C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.720C>G
  hgvsp: ENST00000409728.1:c.720C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.621C>G
  hgvsp: ENST00000409043.1:c.621C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.621C>G
  hgvsp: ENST00000409756.2:c.621C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.621C>G
  hgvsp: ENST00000295237.9:c.621C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-46C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-46C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.621C>G
  hgvsp: ENST00000409195.1:c.621C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3021
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32918
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly207Gly
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

2-168067304-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067304
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067304
    reference: chr 2
allele count: 1
allele frequency: 8.281573498964803e-6
allele num: 120750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.721G>A
  hgvsp: ENSP00000415541.1:p.Glu241Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.622G>A
  hgvsp: ENSP00000295237.9:p.Glu208Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.622G>A
  hgvsp: ENSP00000386840.1:p.Glu208Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.721G>A
  hgvsp: ENSP00000386619.1:p.Glu241Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.622G>A
  hgvsp: ENSP00000386724.2:p.Glu208Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.622G>A
  hgvsp: ENSP00000386454.1:p.Glu208Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-45G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-45G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu208Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

2-168067324-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067324
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067324
    reference: chr 2
allele count: 2
allele frequency: 1.656204971927326e-5
allele num: 120758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.642C>T
  hgvsp: ENST00000409756.2:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.642C>T
  hgvsp: ENST00000409043.1:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.642C>T
  hgvsp: ENST00000295237.9:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.741C>T
  hgvsp: ENST00000420519.1:c.741C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.642C>T
  hgvsp: ENST00000409195.1:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.741C>T
  hgvsp: ENST00000409728.1:c.741C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His214His
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

2-168067332-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067332
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067332
    reference: chr 2
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.650T>A
  hgvsp: ENSP00000386454.1:p.Val217Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.650T>A
  hgvsp: ENSP00000386724.2:p.Val217Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.749T>A
  hgvsp: ENSP00000386619.1:p.Val250Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.650T>A
  hgvsp: ENSP00000295237.9:p.Val217Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-17T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.749T>A
  hgvsp: ENSP00000415541.1:p.Val250Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.650T>A
  hgvsp: ENSP00000386840.1:p.Val217Asp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-17T>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5516
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2726
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val217Asp
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-168067336-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067336
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067336
    reference: chr 2
allele count: 1
allele frequency: 8.281162012653616e-6
allele num: 120756
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.654C>T
  hgvsp: ENST00000409195.1:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.654C>T
  hgvsp: ENST00000409756.2:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.753C>T
  hgvsp: ENST00000409728.1:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-13C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.654C>T
  hgvsp: ENST00000295237.9:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-13C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.654C>T
  hgvsp: ENST00000409043.1:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.753C>T
  hgvsp: ENST00000420519.1:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser218Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

2-168067346-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067346
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067346
    reference: chr 2
allele count: 1
allele frequency: 8.281436332317477e-6
allele num: 120752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-3C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.664C>G
  hgvsp: ENSP00000295237.9:p.Arg222Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-3C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.763C>G
  hgvsp: ENSP00000415541.1:p.Arg255Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.763C>G
  hgvsp: ENSP00000386619.1:p.Arg255Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.664C>G
  hgvsp: ENSP00000386840.1:p.Arg222Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.664C>G
  hgvsp: ENSP00000386454.1:p.Arg222Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.664C>G
  hgvsp: ENSP00000386724.2:p.Arg222Gly
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8656
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5515
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg222Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

2-168067346-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067346
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067346
    reference: chr 2
allele count: 1
allele frequency: 8.281436332317477e-6
allele num: 120752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.763C>T
  hgvsp: ENSP00000386619.1:p.Arg255Trp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.664C>T
  hgvsp: ENSP00000295237.9:p.Arg222Trp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.664C>T
  hgvsp: ENSP00000386840.1:p.Arg222Trp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.664C>T
  hgvsp: ENSP00000386454.1:p.Arg222Trp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-3C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.664C>T
  hgvsp: ENSP00000386724.2:p.Arg222Trp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-3C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.763C>T
  hgvsp: ENSP00000415541.1:p.Arg255Trp
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4014
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2728
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg222Trp
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-168067347-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067347
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067347
    reference: chr 2
allele count: 8
allele frequency: 6.625368536124821e-5
allele num: 120748
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.665G>A
  hgvsp: ENSP00000386724.2:p.Arg222Gln
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-2G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.665G>A
  hgvsp: ENSP00000386454.1:p.Arg222Gln
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.665G>A
  hgvsp: ENSP00000386840.1:p.Arg222Gln
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.764G>A
  hgvsp: ENSP00000415541.1:p.Arg255Gln
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.764G>A
  hgvsp: ENSP00000386619.1:p.Arg255Gln
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.665G>A
  hgvsp: ENSP00000295237.9:p.Arg222Gln
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-2G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg222Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

2-168067347-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067347
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067347
    reference: chr 2
allele count: 1
allele frequency: 8.281710670156027e-6
allele num: 120748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.665G>T
  hgvsp: ENSP00000386724.2:p.Arg222Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.665G>T
  hgvsp: ENSP00000386840.1:p.Arg222Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.665G>T
  hgvsp: ENSP00000295237.9:p.Arg222Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.764G>T
  hgvsp: ENSP00000386619.1:p.Arg255Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.665G>T
  hgvsp: ENSP00000386454.1:p.Arg222Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.764G>T
  hgvsp: ENSP00000415541.1:p.Arg255Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.-2G>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.-2G>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32909
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg222Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

2-168067350-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067350
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067350
    reference: chr 2
allele count: 1
allele frequency: 8.281573498964803e-6
allele num: 120750
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.2T>C
  hgvsp: ENSP00000386981.1:p.Met1?
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.767T>C
  hgvsp: ENSP00000386619.1:p.Met256Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.2T>C
  hgvsp: ENSP00000387255.1:p.Met1?
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.668T>C
  hgvsp: ENSP00000386840.1:p.Met223Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.668T>C
  hgvsp: ENSP00000386454.1:p.Met223Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.767T>C
  hgvsp: ENSP00000415541.1:p.Met256Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.668T>C
  hgvsp: ENSP00000386724.2:p.Met223Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.668T>C
  hgvsp: ENSP00000295237.9:p.Met223Thr
  variant of: http://identifiers.org/hgnc/14303
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5506
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32921
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

2-168067353-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067353
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067353
    reference: chr 2
allele count: 4
allele frequency: 3.312848884398138e-5
allele num: 120742
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.770C>T
  hgvsp: ENSP00000415541.1:p.Ala257Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.671C>T
  hgvsp: ENSP00000386724.2:p.Ala224Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.770C>T
  hgvsp: ENSP00000386619.1:p.Ala257Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.671C>T
  hgvsp: ENSP00000295237.9:p.Ala224Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.671C>T
  hgvsp: ENSP00000386840.1:p.Ala224Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.5C>T
  hgvsp: ENSP00000387255.1:p.Ala2Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.671C>T
  hgvsp: ENSP00000386454.1:p.Ala224Val
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.5C>T
  hgvsp: ENSP00000386981.1:p.Ala2Val
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala224Val
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

2-168067364-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067364
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067364
    reference: chr 2
allele count: 9
allele frequency: 7.454280413464087e-5
allele num: 120736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.16G>A
  hgvsp: ENSP00000387255.1:p.Ala6Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.16G>A
  hgvsp: ENSP00000386981.1:p.Ala6Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.682G>A
  hgvsp: ENSP00000386454.1:p.Ala228Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.781G>A
  hgvsp: ENSP00000415541.1:p.Ala261Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.781G>A
  hgvsp: ENSP00000386619.1:p.Ala261Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.682G>A
  hgvsp: ENSP00000295237.9:p.Ala228Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.682G>A
  hgvsp: ENSP00000386840.1:p.Ala228Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.682G>A
  hgvsp: ENSP00000386724.2:p.Ala228Thr
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3024
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala228Thr
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-168067372-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067372
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067372
    reference: chr 2
allele count: 26
allele frequency: 2.153708520402246e-4
allele num: 120722
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.690T>C
  hgvsp: ENST00000409756.2:c.690T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.690T>C
  hgvsp: ENST00000409043.1:c.690T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.690T>C
  hgvsp: ENST00000295237.9:c.690T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.789T>C
  hgvsp: ENST00000409728.1:c.789T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.24T>C
  hgvsp: ENST00000409273.1:c.24T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.690T>C
  hgvsp: ENST00000409195.1:c.690T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.789T>C
  hgvsp: ENST00000420519.1:c.789T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.24T>C
  hgvsp: ENST00000409605.1:c.24T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 24280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val230Val
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

2-168067383-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067383
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067383
    reference: chr 2
allele count: 1
allele frequency: 8.285690612312537e-6
allele num: 120690
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.800A>G
  hgvsp: ENSP00000386619.1:p.Asp267Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.701A>G
  hgvsp: ENSP00000295237.9:p.Asp234Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.701A>G
  hgvsp: ENSP00000386840.1:p.Asp234Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.701A>G
  hgvsp: ENSP00000386724.2:p.Asp234Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.800A>G
  hgvsp: ENSP00000415541.1:p.Asp267Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.35A>G
  hgvsp: ENSP00000387255.1:p.Asp12Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.701A>G
  hgvsp: ENSP00000386454.1:p.Asp234Gly
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.35A>G
  hgvsp: ENSP00000386981.1:p.Asp12Gly
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4009
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp234Gly
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/2-168067384-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067384
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067384
    reference: chr 2
allele count: 1
allele frequency: 8.286239870071759e-6
allele num: 120682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.36C>A
  hgvsp: ENSP00000386981.1:p.Asp12Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.702C>A
  hgvsp: ENSP00000386724.2:p.Asp234Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.801C>A
  hgvsp: ENSP00000415541.1:p.Asp267Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.702C>A
  hgvsp: ENSP00000295237.9:p.Asp234Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.702C>A
  hgvsp: ENSP00000386840.1:p.Asp234Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.702C>A
  hgvsp: ENSP00000386454.1:p.Asp234Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.36C>A
  hgvsp: ENSP00000387255.1:p.Asp12Glu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.801C>A
  hgvsp: ENSP00000386619.1:p.Asp267Glu
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2722
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5469
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp234Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

2-168067387-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067387
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067387
    reference: chr 2
allele count: 2
allele frequency: 1.657495193263939e-5
allele num: 120664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.804C>T
  hgvsp: ENST00000420519.1:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.39C>T
  hgvsp: ENST00000409605.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.705C>T
  hgvsp: ENST00000409043.1:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.39C>T
  hgvsp: ENST00000409273.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.705C>T
  hgvsp: ENST00000295237.9:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.705C>T
  hgvsp: ENST00000409756.2:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.705C>T
  hgvsp: ENST00000409195.1:c.705C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.804C>T
  hgvsp: ENST00000409728.1:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4010
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3027
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys235Cys
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

2-168067388-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067388
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067388
    reference: chr 2
allele count: 4
allele frequency: 3.315155232143745e-5
allele num: 120658
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.706C>T
  hgvsp: ENSP00000386840.1:p.Arg236Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.805C>T
  hgvsp: ENSP00000415541.1:p.Arg269Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.805C>T
  hgvsp: ENSP00000386619.1:p.Arg269Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.706C>T
  hgvsp: ENSP00000295237.9:p.Arg236Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.706C>T
  hgvsp: ENSP00000386724.2:p.Arg236Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.40C>T
  hgvsp: ENSP00000386981.1:p.Arg14Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.706C>T
  hgvsp: ENSP00000386454.1:p.Arg236Cys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.40C>T
  hgvsp: ENSP00000387255.1:p.Arg14Cys
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8543
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5466
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg236Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

2-168067389-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067389
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067389
    reference: chr 2
allele count: 5
allele frequency: 4.144081422911798e-5
allele num: 120654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.41G>A
  hgvsp: ENSP00000387255.1:p.Arg14His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.41G>A
  hgvsp: ENSP00000386981.1:p.Arg14His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.707G>A
  hgvsp: ENSP00000386840.1:p.Arg236His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.707G>A
  hgvsp: ENSP00000386454.1:p.Arg236His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.707G>A
  hgvsp: ENSP00000295237.9:p.Arg236His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.707G>A
  hgvsp: ENSP00000386724.2:p.Arg236His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.806G>A
  hgvsp: ENSP00000415541.1:p.Arg269His
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.806G>A
  hgvsp: ENSP00000386619.1:p.Arg269His
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9148
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5461
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg236His
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

2-168067389-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067389
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067389
    reference: chr 2
allele count: 3
allele frequency: 2.486448853747078e-5
allele num: 120654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.707G>T
  hgvsp: ENSP00000295237.9:p.Arg236Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.707G>T
  hgvsp: ENSP00000386454.1:p.Arg236Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.806G>T
  hgvsp: ENSP00000386619.1:p.Arg269Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.41G>T
  hgvsp: ENSP00000387255.1:p.Arg14Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.806G>T
  hgvsp: ENSP00000415541.1:p.Arg269Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.707G>T
  hgvsp: ENSP00000386724.2:p.Arg236Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.707G>T
  hgvsp: ENSP00000386840.1:p.Arg236Leu
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.41G>T
  hgvsp: ENSP00000386981.1:p.Arg14Leu
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9148
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg236Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

2-168067413-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067413
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067413
    reference: chr 2
allele count: 1
allele frequency: 8.317806760713336e-6
allele num: 120224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.57+8G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.57+8G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.723+8G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.723+8G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.822+8G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.723+8G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.723+8G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.822+8G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: c.723+8G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

2-168067423-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067423
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067422
    reference: chr 2
allele count: 2
allele frequency: 1.66814019050161e-5
allele num: 119894
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.822+22delT
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.723+22delT
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.57+22delT
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.57+22delT
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.723+22delT
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.723+22delT
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.822+22delT
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.723+22delT
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14305
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5428
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30576
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3910
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: GT
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

2-168067424-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067424
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067424
    reference: chr 2
allele count: 1
allele frequency: 8.341953351796856e-6
allele num: 119876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.822+19T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.723+19T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.723+19T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.57+19T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.57+19T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.723+19T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.723+19T>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.822+19T>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3901
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2678
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-168067429-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067429
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067429
    reference: chr 2
allele count: 1
allele frequency: 8.358268835358821e-6
allele num: 119642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.57+24C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.723+24C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.723+24C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.57+24C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.822+24C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.723+24C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.723+24C>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.822+24C>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2641
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-168067438-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067438
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067438
    reference: chr 2
allele count: 5
allele frequency: 4.187815133088765e-5
allele num: 119394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.822+33A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.57+33A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.57+33A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.822+33A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.723+33A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.723+33A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.723+33A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.723+33A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12414
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7856
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/2-168067443-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067443
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067443
    reference: chr 2
allele count: 1
allele frequency: 8.405621679779436e-6
allele num: 118968
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.822+38C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.57+38C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.822+38C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.723+38C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.723+38C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.57+38C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.723+38C>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.723+38C>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3531
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5406
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6983
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

2-168067444-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067444
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067444
    reference: chr 2
allele count: 3
allele frequency: 2.52075420965953e-5
allele num: 119012
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.57+39T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.57+39T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.822+39T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.723+39T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.723+39T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.822+39T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.723+39T>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.723+39T>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10828
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3518
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3638
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18879
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-168067446-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067446
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067446
    reference: chr 2
allele count: 1
allele frequency: 8.407035006893769e-6
allele num: 118948
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.57+41A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.822+41A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.723+41A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.723+41A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.723+41A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.723+41A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.57+41A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.822+41A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7023
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2532
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3511
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3826
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6710
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

2-168067447-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067447
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067447
    reference: chr 2
allele count: 3946
allele frequency: 3.327374527792769e-2
allele num: 118592
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.57+42C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.723+42C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.723+42C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.822+42C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.822+42C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.57+42C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.723+42C>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.723+42C>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10212
  bin: 1.75e1
  variant carriers: 321
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 1.25e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 10198
  bin: 3.25e1
  variant carriers: 707
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 4.25e1
  variant carriers: 329
genotype depth: GenotypeDepth
  all individuals: 14607
  bin: 2.75e1
  variant carriers: 757
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 5.25e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 4.75e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 5.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 2.25e1
  variant carriers: 547
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 3.75e1
  variant carriers: 521
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4085
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3092
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 8.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3804
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3154
  bin: 7.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 95
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

2-168067450-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067450
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067450
    reference: chr 2
allele count: 11
allele frequency: 9.281760496827326e-5
allele num: 118512
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.822+45T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.822+45T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.723+45T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.723+45T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.57+45T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.723+45T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.723+45T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.57+45T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10893
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4766
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10439
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13025
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4828
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14047
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

2-168067454-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168067454
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168067454
    reference: chr 2
allele count: 10
allele frequency: 8.490261669864665e-5
allele num: 117782
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.723+49T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.822+49T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.723+49T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.723+49T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.822+49T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.723+49T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.57+49T>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.57+49T>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13042
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8315
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10358
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2124
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9609
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5519
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2876
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

2-168074631-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168074631
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168074631
    reference: chr 2
allele count: 2
allele frequency: 1.816827455896514e-5
allele num: 110082
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.724-45G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.58-45G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.823-45G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.58-45G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.724-45G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.724-45G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.724-45G>C
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.823-45G>C
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7513
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5680
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

2-168074639-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168074639
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168074639
    reference: chr 2
allele count: 1
allele frequency: 9.064539521392313e-6
allele num: 110320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.58-37G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.823-37G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.724-37G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.724-37G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.823-37G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.724-37G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.58-37G>A
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.724-37G>A
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30024
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

2-168074648-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168074648
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168074648
    reference: chr 2
allele count: 1
allele frequency: 9.03407653669642e-6
allele num: 110692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.823-28A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.58-28A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.724-28A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.724-28A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.823-28A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.724-28A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.58-28A>T
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.724-28A>T
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21438
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2958
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3349
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1084
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7605
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

2-168074669-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168074669
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168074669
    reference: chr 2
allele count: 1
allele frequency: 8.919492659257542e-6
allele num: 112114
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.823-7A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.823-7A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.58-7A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.724-7A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.724-7A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.724-7A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.58-7A>G
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.724-7A>G
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7680
  bin: 6.75e1
  variant carriers: 0
hgvs: c.724-7A>G
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

2-168074677-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168074677
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168074677
    reference: chr 2
allele count: 1
allele frequency: 8.829086542706291e-6
allele num: 113262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.824T>A
  hgvsp: ENSP00000386619.1:p.Met275Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.59T>A
  hgvsp: ENSP00000387255.1:p.Met20Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.59T>A
  hgvsp: ENSP00000386981.1:p.Met20Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.824T>A
  hgvsp: ENSP00000415541.1:p.Met275Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.725T>A
  hgvsp: ENSP00000386840.1:p.Met242Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.725T>A
  hgvsp: ENSP00000295237.9:p.Met242Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.725T>A
  hgvsp: ENSP00000386724.2:p.Met242Lys
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.725T>A
  hgvsp: ENSP00000386454.1:p.Met242Lys
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Met242Lys
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-168074699-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168074699
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168074699
    reference: chr 2
allele count: 2
allele frequency: 1.718272105570638e-5
allele num: 116396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.81C>A
  hgvsp: ENSP00000386981.1:p.Cys27Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.747C>A
  hgvsp: ENSP00000295237.9:p.Cys249Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.747C>A
  hgvsp: ENSP00000386454.1:p.Cys249Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.846C>A
  hgvsp: ENSP00000386619.1:p.Cys282Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.747C>A
  hgvsp: ENSP00000386724.2:p.Cys249Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.81C>A
  hgvsp: ENSP00000387255.1:p.Cys27Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.747C>A
  hgvsp: ENSP00000386840.1:p.Cys249Ter
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.846C>A
  hgvsp: ENSP00000415541.1:p.Cys282Ter
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22049
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys249Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

2-168074699-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168074699
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168074699
    reference: chr 2
allele count: 1
allele frequency: 8.59136052785319e-6
allele num: 116396
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.747C>G
  hgvsp: ENSP00000386840.1:p.Cys249Trp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.747C>G
  hgvsp: ENSP00000386724.2:p.Cys249Trp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.846C>G
  hgvsp: ENSP00000415541.1:p.Cys282Trp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.747C>G
  hgvsp: ENSP00000386454.1:p.Cys249Trp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.81C>G
  hgvsp: ENSP00000387255.1:p.Cys27Trp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.846C>G
  hgvsp: ENSP00000386619.1:p.Cys282Trp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.747C>G
  hgvsp: ENSP00000295237.9:p.Cys249Trp
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.81C>G
  hgvsp: ENSP00000386981.1:p.Cys27Trp
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18988
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34521
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Cys249Trp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

2-168074699-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168074699
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168074699
    reference: chr 2
allele count: 3
allele frequency: 2.577408158355957e-5
allele num: 116396
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.747C>T
  hgvsp: ENST00000409195.1:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.81C>T
  hgvsp: ENST00000409605.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.747C>T
  hgvsp: ENST00000295237.9:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.747C>T
  hgvsp: ENST00000409043.1:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.81C>T
  hgvsp: ENST00000409273.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.846C>T
  hgvsp: ENST00000409728.1:c.846C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.747C>T
  hgvsp: ENST00000409756.2:c.747C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.846C>T
  hgvsp: ENST00000420519.1:c.846C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18988
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2997
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Cys249Cys
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

2-168074700-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168074700
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168074700
    reference: chr 2
allele count: 17
allele frequency: 1.456003014782713e-4
allele num: 116758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.748G>A
  hgvsp: ENSP00000386454.1:p.Ala250Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.748G>A
  hgvsp: ENSP00000386840.1:p.Ala250Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.847G>A
  hgvsp: ENSP00000415541.1:p.Ala283Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.847G>A
  hgvsp: ENSP00000386619.1:p.Ala283Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.748G>A
  hgvsp: ENSP00000386724.2:p.Ala250Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.748G>A
  hgvsp: ENSP00000295237.9:p.Ala250Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.82G>A
  hgvsp: ENSP00000387255.1:p.Ala28Thr
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.82G>A
  hgvsp: ENSP00000386981.1:p.Ala28Thr
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala250Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

2-168074700-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 168074700
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 168074700
    reference: chr 2
allele count: 1
allele frequency: 8.5647236163689e-6
allele num: 116758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386454
  ensembl transcript: ENST00000409043
  gene symbol: XIRP2
  hgvsc: ENST00000409043.1:c.748G>T
  hgvsp: ENSP00000386454.1:p.Ala250Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000295237
  ensembl transcript: ENST00000295237
  gene symbol: XIRP2
  hgvsc: ENST00000295237.9:c.748G>T
  hgvsp: ENSP00000295237.9:p.Ala250Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386724
  ensembl transcript: ENST00000409756
  gene symbol: XIRP2
  hgvsc: ENST00000409756.2:c.748G>T
  hgvsp: ENSP00000386724.2:p.Ala250Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386981
  ensembl transcript: ENST00000409605
  gene symbol: XIRP2
  hgvsc: ENST00000409605.1:c.82G>T
  hgvsp: ENSP00000386981.1:p.Ala28Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000415541
  ensembl transcript: ENST00000420519
  gene symbol: XIRP2
  hgvsc: ENST00000420519.1:c.847G>T
  hgvsp: ENSP00000415541.1:p.Ala283Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386840
  ensembl transcript: ENST00000409195
  gene symbol: XIRP2
  hgvsc: ENST00000409195.1:c.748G>T
  hgvsp: ENSP00000386840.1:p.Ala250Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000386619
  ensembl transcript: ENST00000409728
  gene symbol: XIRP2
  hgvsc: ENST00000409728.1:c.847G>T
  hgvsp: ENSP00000386619.1:p.Ala283Ser
  variant of: http://identifiers.org/hgnc/14303
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163092
  ensembl protein: ENSP00000387255
  ensembl transcript: ENST00000409273
  gene symbol: XIRP2
  hgvsc: ENST00000409273.1:c.82G>T
  hgvsp: ENSP00000387255.1:p.Ala28Ser
  variant of: http://identifiers.org/hgnc/14303
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala250Ser
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3083
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4466
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.554968123153475e-5
allele num: 64310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 1.884946e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

QD
type: SiteQuality
SIO_000300: 9.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.512e0

GenotypeQuality
all individuals: 4883
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4464
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555935895441108e-5
allele num: 64270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.91e0

DP
type: SiteQuality
SIO_000300: 1.88116e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.24e-1

QD
type: SiteQuality
SIO_000300: 1.327e1

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.566612357438275e-5
allele num: 63832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.749e0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.51e0

DP
type: SiteQuality
SIO_000300: 1.858289e6

GenotypeQuality
all individuals: 22617
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3357
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.869966294128082e-5
allele num: 11274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568037131119265e-5
allele num: 63774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11850
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.758e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

QD
type: SiteQuality
SIO_000300: 9.619999999999999e0

FS
type: SiteQuality
SIO_000300: 1.006e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e-1

DP
type: SiteQuality
SIO_000300: 1.85644e6

GenotypeQuality
all individuals: 1356
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 126
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variant carriers: 0

GenotypeQuality
all individuals: 22062
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.231527093596059e-3
allele num: 812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.063e0

VQSLOD
type: SiteQuality
SIO_000300: 6.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.97e-1

DP
type: SiteQuality
SIO_000300: 1.843966e6

MQRankSum
type: SiteQuality
SIO_000300: 9.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

FS
type: SiteQuality
SIO_000300: 3.979e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

QD
type: SiteQuality
SIO_000300: 1.101e1

GenotypeQuality
all individuals: 1123
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 217
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GenotypeQuality
all individuals: 747
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63402
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.778726431874778e-4
allele num: 11244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.16e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.46e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.007e0

DP
type: SiteQuality
SIO_000300: 1.82416e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

QD
type: SiteQuality
SIO_000300: 1.143e1

GenotypeQuality
all individuals: 2214
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11158
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.215953307392996e-4
allele num: 8224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.182888789865682e-5
allele num: 62836
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.755015e6

FS
type: SiteQuality
SIO_000300: 2.029e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.67e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2246
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.592001783041997e-5
allele num: 62814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9166
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.364e0

DP
type: SiteQuality
SIO_000300: 1.74895e6

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

QD
type: SiteQuality
SIO_000300: 1.671e1

GenotypeQuality
all individuals: 11036
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2657
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GenotypeQuality
all individuals: 6615
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.595659805329504e-5
allele num: 62670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9134
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.01e0

DP
type: SiteQuality
SIO_000300: 1.740745e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.367e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 171
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GenotypeQuality
all individuals: 141
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GenotypeQuality
all individuals: 244
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GenotypeQuality
all individuals: 271
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.344447432105405e-4
allele num: 7438
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.045e0

DP
type: SiteQuality
SIO_000300: 2.73999e5

MQ
type: SiteQuality
SIO_000300: 5.885e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.433e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.359e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.71e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.375e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.591e1

GenotypeQuality
all individuals: 144
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 9.75e1
variant carriers: 7

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 990
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 9.36830835117773e-4
allele num: 7472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1642
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.529e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.72e-2

QD
type: SiteQuality
SIO_000300: 1.188e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.105e0

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

DP
type: SiteQuality
SIO_000300: 2.79249e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4101
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.881422924901185e-4
allele num: 1012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.1e-1

DP
type: SiteQuality
SIO_000300: 2.85338e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.62e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.375e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e0

GenotypeQuality
all individuals: 83
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4304
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1994
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.541984732824427e-4
allele num: 1048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.99e0

QD
type: SiteQuality
SIO_000300: 1.089e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.42e-2

DP
type: SiteQuality
SIO_000300: 2.89971e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.202e0

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 110
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 9.75e1
variant carriers: 142

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 30
allele frequency: 6.097560975609756e-2
allele num: 492
num of homozygotes: 1

African
type: Population
allele count: 20
allele frequency: 1.785714285714286e-2
allele num: 1120
num of homozygotes: 0

South Asian
type: Population
allele count: 36
allele frequency: 4.698512137823023e-3
allele num: 7662
num of homozygotes: 3

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 5.232177894048398e-3
allele num: 6116
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 1.582278481012658e-2
allele num: 316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 21
allele frequency: 1.248513674197384e-2
allele num: 1682
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 1.886792452830189e-2
allele num: 212
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.034e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-1

DP
type: SiteQuality
SIO_000300: 3.00525e5

MQ
type: SiteQuality
SIO_000300: 5.992e1

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

QD
type: SiteQuality
SIO_000300: 1.23e1

VQSLOD
type: SiteQuality
SIO_000300: 4.85e0

FS
type: SiteQuality
SIO_000300: 1.141e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.92e-1

GenotypeQuality
all individuals: 4659
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.65017667844523e-3
allele num: 1132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.619695497246518e-4
allele num: 6174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1680
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.136e1

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

FS
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.19e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.97e-1

DP
type: SiteQuality
SIO_000300: 2.97792e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 288
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4647
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.609603340292275e-4
allele num: 7664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.577e0

VQSLOD
type: SiteQuality
SIO_000300: -2.11e0

FS
type: SiteQuality
SIO_000300: 7.28e-1

MQ
type: SiteQuality
SIO_000300: 5.892e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.46e0

DP
type: SiteQuality
SIO_000300: 2.97524e5

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 265
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 1.193317422434368e-3
allele num: 1676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.74e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.900000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

DP
type: SiteQuality
SIO_000300: 2.97166e5

QD
type: SiteQuality
SIO_000300: 1.459e1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 138
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3162
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 478
bin: 6.75e1
variant carriers: 6

GenotypeQuality
all individuals: 3741
bin: 9.75e1
variant carriers: 2079

GenotypeQuality
all individuals: 169
bin: 8.25e1
variant carriers: 13

East Asian
type: Population
allele count: 40
allele frequency: 8.163265306122448e-2
allele num: 490
num of homozygotes: 3

African
type: Population
allele count: 166
allele frequency: 1.487455197132616e-1
allele num: 1116
num of homozygotes: 16

European (Non-Finnish)
type: Population
allele count: 666
allele frequency: 1.119704102219233e-1
allele num: 5948
num of homozygotes: 33

Latino
type: Population
allele count: 40
allele frequency: 1.273885350318471e-1
allele num: 314
num of homozygotes: 4

South Asian
type: Population
allele count: 1285
allele frequency: 1.690789473684211e-1
allele num: 7600
num of homozygotes: 112

European (Finnish)
type: Population
allele count: 67
allele frequency: 4.031287605294825e-2
allele num: 1662
num of homozygotes: 2

Other
type: Population
allele count: 23
allele frequency: 1.074766355140187e-1
allele num: 214
num of homozygotes: 2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 6.41e0

QD
type: SiteQuality
SIO_000300: 1.586e1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.06e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

DP
type: SiteQuality
SIO_000300: 3.43091e5

GenotypeQuality
all individuals: 179
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 210
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 575
bin: 6.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.333333333333333e-4
allele num: 7500
num of homozygotes: 0

African
type: Population
allele count: 63
allele frequency: 5.954631379962193e-2
allele num: 1058
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5726
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.96998e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

QD
type: SiteQuality
SIO_000300: 1.265e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e-1

GenotypeQuality
all individuals: 175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2099
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 154
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.508630187293427e-4
allele num: 5446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.308e0

QD
type: SiteQuality
SIO_000300: 1.149e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.86e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.183e-1

FS
type: SiteQuality
SIO_000300: 1.534e0

DP
type: SiteQuality
SIO_000300: 2.72208e5

GenotypeQuality
all individuals: 186
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2099
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 998
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.86219739292365e-4
allele num: 5370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1638
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

DP
type: SiteQuality
SIO_000300: 2.70261e5

MQRankSum
type: SiteQuality
SIO_000300: -6.76e-1

FS
type: SiteQuality
SIO_000300: 5.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.448e1

VQSLOD
type: SiteQuality
SIO_000300: 4.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504483360414034e-5
allele num: 66468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

QD
type: SiteQuality
SIO_000300: 1.503e1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 5.904e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

FS
type: SiteQuality
SIO_000300: 3.995e0

VQSLOD
type: SiteQuality
SIO_000300: 4.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

DP
type: SiteQuality
SIO_000300: 1.852045e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66518
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.772e0

DP
type: SiteQuality
SIO_000300: 1.86359e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

FS
type: SiteQuality
SIO_000300: 6.378e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.7e-2

QD
type: SiteQuality
SIO_000300: 1.213e1

VQSLOD
type: SiteQuality
SIO_000300: 2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.77e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66522
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.022076860179886e-4
allele num: 9784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.138e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

QD
type: SiteQuality
SIO_000300: 1.036e1

DP
type: SiteQuality
SIO_000300: 1.864057e6

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4009
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093845216331505e-5
allele num: 16410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.138e-1

DP
type: SiteQuality
SIO_000300: 1.864057e6

QD
type: SiteQuality
SIO_000300: 1.036e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.91e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 4011
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.02e-1

DP
type: SiteQuality
SIO_000300: 1.875664e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.244e0

MQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -8.625e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 1.020408163265306e-4
allele num: 9800
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.9e0

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.31e-1

FS
type: SiteQuality
SIO_000300: 6.234e0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

Other
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allele num: 900
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East Asian
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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QD
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FS
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

European (Finnish)
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East Asian
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Other
type: Population
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African
type: Population
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Latino
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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MQ
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 7
allele frequency: 8.116883116883117e-4
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Other
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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QD
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FS
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BaseQRankSum
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MQ
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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allele count: 11
allele frequency: 6.661821705426356e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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QD
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FS
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BaseQRankSum
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DP
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele num: 16512
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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DP
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.618e0

BaseQRankSum
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DP
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MQ
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997062878379188e-5
allele num: 66732
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9802
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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QD
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DP
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ClippingRankSum
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BaseQRankSum
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FS
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele num: 66732
num of homozygotes: 0

African
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European (Finnish)
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num of homozygotes: 0

Latino
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QD
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MQ
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VQSLOD
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MQRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 66730
num of homozygotes: 0

African
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East Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

Latino
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MQ
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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DP
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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European (Non-Finnish)
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Other
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South Asian
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Latino
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African
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East Asian
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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MQ
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MQRankSum
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FS
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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Other
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South Asian
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European (Non-Finnish)
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African
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European (Finnish)
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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MQ
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DP
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QD
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496133325340207e-5
allele num: 66724
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.06e-1

FS
type: SiteQuality
SIO_000300: 2.899e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.86e-1

DP
type: SiteQuality
SIO_000300: 1.873212e6

QD
type: SiteQuality
SIO_000300: 1.132e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 9169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.86e-1

DP
type: SiteQuality
SIO_000300: 1.873212e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.984e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

FS
type: SiteQuality
SIO_000300: 2.899e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.06e-1

QD
type: SiteQuality
SIO_000300: 1.132e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.22e-1

DP
type: SiteQuality
SIO_000300: 1.872455e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.434e0

VQSLOD
type: SiteQuality
SIO_000300: -9.752999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

QD
type: SiteQuality
SIO_000300: 1.293e1

FS
type: SiteQuality
SIO_000300: 7.468e0

MQ
type: SiteQuality
SIO_000300: 5.894e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.98e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1226
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GenotypeQuality
all individuals: 3020
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496537665997182e-5
allele num: 66718
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.872293e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 3.662e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

QD
type: SiteQuality
SIO_000300: 1.191e1

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.774706288873532e-4
allele num: 11576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

DP
type: SiteQuality
SIO_000300: 1.871703e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.038e0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 1.197e1

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 2.803e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.97e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 26

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.049475262368816e-4
allele num: 66700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 1.663138796492289e-3
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.84613520717228e-4
allele num: 16508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.21e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.42e1

DP
type: SiteQuality
SIO_000300: 1.870999e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.087e0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e0

MQRankSum
type: SiteQuality
SIO_000300: -1.724e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

DP
type: SiteQuality
SIO_000300: 1.868721e6

QD
type: SiteQuality
SIO_000300: 1.816e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.464e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.95e-1

DP
type: SiteQuality
SIO_000300: 1.86853e6

QD
type: SiteQuality
SIO_000300: 1.405e1

FS
type: SiteQuality
SIO_000300: 1.667e0

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999760019198464e-5
allele num: 66672
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 5.99970001499925e-5
allele num: 66670
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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QD
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DP
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InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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SIO_000300: -1.13e-1

ReadPosRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.499910001799964e-5
allele num: 66668
num of homozygotes: 0

African
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allele frequency: 1.020616452337212e-4
allele num: 9798
num of homozygotes: 0

East Asian
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allele frequency: 1.160092807424594e-4
allele num: 8620
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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InbreedingCoeff
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MQ
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VQSLOD
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DP
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999940001199976e-5
allele num: 66668
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
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allele frequency: 6.06501698204755e-5
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num of homozygotes: 0

QD
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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FS
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MQ
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 1
allele frequency: 6.124448799608035e-5
allele num: 16328
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African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: -3.07e-1

MQRankSum
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 1.73550850399167e-4
allele num: 11524
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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BaseQRankSum
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MQ
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DP
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FS
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SIO_000300: 5.112e0

ReadPosRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.507204437209863e-5
allele num: 66348
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Other
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ClippingRankSum
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MQ
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DP
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FS
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BaseQRankSum
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VQSLOD
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QD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.509707418702255e-5
allele num: 66238
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Other
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allele num: 888
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FS
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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MQ
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BaseQRankSum
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QD
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DP
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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SIO_000300: -4.46e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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African
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East Asian
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European (Finnish)
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FS
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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allele num: 65934
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MQ
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FS
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VQSLOD
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DP
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 1001
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3126
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3657
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1874
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5406
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2537
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6776
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.522997258604935e-4
allele num: 6566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.032232632887595e-5
allele num: 65958
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.485e1

DP
type: SiteQuality
SIO_000300: 1.672676e6

VQSLOD
type: SiteQuality
SIO_000300: 5.78e-1

FS
type: SiteQuality
SIO_000300: 5.501e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

GenotypeQuality
all individuals: 18538
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3743
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5403
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3168
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516714190377965e-5
allele num: 65932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.059e0

FS
type: SiteQuality
SIO_000300: 5.166e0

DP
type: SiteQuality
SIO_000300: 1.664731e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

QD
type: SiteQuality
SIO_000300: 5.94e0

MQRankSum
type: SiteQuality
SIO_000300: -3.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

GenotypeQuality
all individuals: 2602
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 8395
bin: 9.75e1
variant carriers: 3774

GenotypeQuality
all individuals: 196
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 8.25e1
variant carriers: 8

GenotypeQuality
all individuals: 5988
bin: 6.75e1
variant carriers: 8

GenotypeQuality
all individuals: 16133
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1433
bin: 9.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1997
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1043
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1946
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 199
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2257
bin: 7.25e1
variant carriers: 9

Latino
type: Population
allele count: 161
allele frequency: 1.407096661422828e-2
allele num: 11442
num of homozygotes: 2

South Asian
type: Population
allele count: 66
allele frequency: 4.179860671310956e-3
allele num: 15790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3128
allele frequency: 4.759441282979824e-2
allele num: 65722
num of homozygotes: 78

Other
type: Population
allele count: 42
allele frequency: 4.794520547945205e-2
allele num: 876
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

African
type: Population
allele count: 87
allele frequency: 8.930404434407719e-3
allele num: 9742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 462
allele frequency: 7.064220183486239e-2
allele num: 6540
num of homozygotes: 13

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

QD
type: SiteQuality
SIO_000300: 1.557e1

DP
type: SiteQuality
SIO_000300: 1.650732e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.048e0

GenotypeQuality
all individuals: 3336
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2374
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4216
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5020
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2393
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5976
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2687
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.635919364691509e-4
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.129918743723181e-5
allele num: 65718
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

FS
type: SiteQuality
SIO_000300: 2.242e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.61001e6

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

QD
type: SiteQuality
SIO_000300: 1.244e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-2

GenotypeQuality
all individuals: 221
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4619
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5503
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3279
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5043
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4322
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5015
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 3041
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1555
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.41025641025641e-4
allele num: 15600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.39e-1

QD
type: SiteQuality
SIO_000300: 1.439e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 3.453e0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

DP
type: SiteQuality
SIO_000300: 1.59169e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

GenotypeQuality
all individuals: 855
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27345
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2518
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1090
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3063
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.135484275546358e-5
allele num: 63786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9516
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e0

FS
type: SiteQuality
SIO_000300: 9.218e0

MQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.534e1

VQSLOD
type: SiteQuality
SIO_000300: -1.654e0

DP
type: SiteQuality
SIO_000300: 1.641505e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

GenotypeQuality
all individuals: 304
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2469
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7515
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5670
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2955
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.042535446205171e-4
allele num: 9592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: -2.656e0

DP
type: SiteQuality
SIO_000300: 1.65585e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.98e-1

FS
type: SiteQuality
SIO_000300: 6.729e0

QD
type: SiteQuality
SIO_000300: 2.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.435e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-1

GenotypeQuality
all individuals: 234
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5672
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31558
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1899
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63990
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172882946281961e-4
allele num: 8526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-1

MQ
type: SiteQuality
SIO_000300: 5.803e1

FS
type: SiteQuality
SIO_000300: 3.422e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.133e0

VQSLOD
type: SiteQuality
SIO_000300: -1.813e0

DP
type: SiteQuality
SIO_000300: 1.670838e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.87e-1

QD
type: SiteQuality
SIO_000300: 1.58e1

GenotypeQuality
all individuals: 1083
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3804
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2985
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5674
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1912
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32500
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.552746809105307e-5
allele num: 64402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.916e0

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 1.690362e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

QD
type: SiteQuality
SIO_000300: 1.263e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.565e0

GenotypeQuality
all individuals: 32994
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2486
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7702
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5674
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2991
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3471
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.753501400560224e-5
allele num: 11424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

DP
type: SiteQuality
SIO_000300: 1.699518e6

FS
type: SiteQuality
SIO_000300: 3.09e0

VQSLOD
type: SiteQuality
SIO_000300: -5.054999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.769e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.96e-1

GenotypeQuality
all individuals: 1924
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2997
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5677
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7754
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34521
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65448
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.348618459729571e-5
allele num: 13608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

DP
type: SiteQuality
SIO_000300: 1.727388e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

FS
type: SiteQuality
SIO_000300: 1.378e0

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -7.36e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

GenotypeQuality
all individuals: 2502
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7754
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2997
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1924
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5677
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 783
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527930570834861e-5
allele num: 65448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQ
type: SiteQuality
SIO_000300: 5.878e1

FS
type: SiteQuality
SIO_000300: 1.378e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.727388e6

VQSLOD
type: SiteQuality
SIO_000300: -7.36e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5677
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1084
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7754
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34521
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.026694045174538e-4
allele num: 9740
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527930570834861e-5
allele num: 65448
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.36e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

FS
type: SiteQuality
SIO_000300: 1.378e0

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.727388e6

GenotypeQuality
all individuals: 185
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7790
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1983
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5689
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 3003
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1921
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34717
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.440735881868383e-4
allele num: 65554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.730195e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

FS
type: SiteQuality
SIO_000300: 5.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

QD
type: SiteQuality
SIO_000300: 1.212e1

GenotypeQuality
all individuals: 781
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5689
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7790
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2506
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3003
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34717
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52545992616774e-5
allele num: 65554
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.730195e6

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0