3-159606682-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159606682
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159606682
    reference: chr 3
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.150-3204C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.156-3204C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1415C>T
  hgvsp: ENSP00000418692.1:p.Thr472Ile
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.102C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1268C>T
  hgvsp: ENSP00000337239.6:p.Thr423Ile
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1496C>T
  hgvsp: ENSP00000420182.1:p.Thr499Ile
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.539C>T
  hgvsp: ENSP00000404860.2:p.Thr180Ile
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.572C>T
  hgvsp: ENSP00000436076.1:p.Thr191Ile
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.587C>T
  hgvsp: ENSP00000419230.1:p.Thr196Ile
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1229C>T
  hgvsp: ENSP00000400942.2:p.Thr410Ile
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3272C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1148C>T
  hgvsp: ENSP00000417305.1:p.Thr383Ile
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr180Ile
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

3-159606684-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159606684
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159606684
    reference: chr 3
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1270A>G
  hgvsp: ENSP00000337239.6:p.Ile424Val
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1231A>G
  hgvsp: ENSP00000400942.2:p.Ile411Val
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.541A>G
  hgvsp: ENSP00000404860.2:p.Ile181Val
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1498A>G
  hgvsp: ENSP00000420182.1:p.Ile500Val
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3274A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.574A>G
  hgvsp: ENSP00000436076.1:p.Ile192Val
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1150A>G
  hgvsp: ENSP00000417305.1:p.Ile384Val
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.156-3202A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1417A>G
  hgvsp: ENSP00000418692.1:p.Ile473Val
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.104A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.589A>G
  hgvsp: ENSP00000419230.1:p.Ile197Val
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.150-3202A>G
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile181Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum

3-159606685-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159606685
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159606685
    reference: chr 3
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.575T>C
  hgvsp: ENSP00000436076.1:p.Ile192Thr
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.590T>C
  hgvsp: ENSP00000419230.1:p.Ile197Thr
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1151T>C
  hgvsp: ENSP00000417305.1:p.Ile384Thr
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1418T>C
  hgvsp: ENSP00000418692.1:p.Ile473Thr
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.542T>C
  hgvsp: ENSP00000404860.2:p.Ile181Thr
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.105T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.150-3201T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1499T>C
  hgvsp: ENSP00000420182.1:p.Ile500Thr
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1232T>C
  hgvsp: ENSP00000400942.2:p.Ile411Thr
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.156-3201T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1271T>C
  hgvsp: ENSP00000337239.6:p.Ile424Thr
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3275T>C
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile181Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

3-159606716-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159606716
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159606716
    reference: chr 3
allele count: 65
allele frequency: 5.357290035440534e-4
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1263C>T
  hgvsp: ENST00000412423.2:c.1263C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1449C>T
  hgvsp: ENST00000476809.1:c.1449C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.136C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.606C>T
  hgvsp: ENST00000527095.1:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1302C>T
  hgvsp: ENST00000337808.6:c.1302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.621C>T
  hgvsp: ENST00000482804.1:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.573C>T
  hgvsp: ENST00000445224.2:c.573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1182C>T
  hgvsp: ENST00000460298.1:c.1182C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.156-3170C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3306C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.150-3170C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1530C>T
  hgvsp: ENST00000485419.1:c.1530C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7826
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu191Leu
num of homozygotes: 1
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP

3-159606721-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159606721
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159606721
    reference: chr 3
allele count: 3
allele frequency: 2.472962279082036e-5
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1454C>T
  hgvsp: ENSP00000418692.1:p.Ser485Phe
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1535C>T
  hgvsp: ENSP00000420182.1:p.Ser512Phe
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1307C>T
  hgvsp: ENSP00000337239.6:p.Ser436Phe
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3311C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1268C>T
  hgvsp: ENSP00000400942.2:p.Ser423Phe
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.611C>T
  hgvsp: ENSP00000436076.1:p.Ser204Phe
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.150-3165C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.578C>T
  hgvsp: ENSP00000404860.2:p.Ser193Phe
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.141C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1187C>T
  hgvsp: ENSP00000417305.1:p.Ser396Phe
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.626C>T
  hgvsp: ENSP00000419230.1:p.Ser209Phe
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.156-3165C>T
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17806
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser193Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

3-159606759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159606759
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159606759
    reference: chr 3
allele count: 1
allele frequency: 8.28225940036442e-6
allele num: 120740
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1546+27G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.637+27G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1279+27G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.156-3127G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.589+27G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1198+27G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3322+27G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1318+27G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1465+27G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.150-3127G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.152+27G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.622+27G>A
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

3-159606767-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159606767
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159606767
    reference: chr 3
allele count: 1
allele frequency: 8.291186468783682e-6
allele num: 120610
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1279+35A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.150-3119A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1465+35A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3322+35A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1198+35A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.152+35A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.156-3119A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.637+35A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1318+35A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.589+35A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.622+35A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1546+35A>G
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12026
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum

3-159606768-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159606768
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159606768
    reference: chr 3
allele count: 2
allele frequency: 1.658182300562124e-5
allele num: 120614
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1198+36A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.637+36A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.150-3118A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1465+36A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1279+36A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.589+36A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.156-3118A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.622+36A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3322+36A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1546+36A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1318+36A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.152+36A>G
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14408
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

3-159606776-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159606776
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159606776
    reference: chr 3
allele count: 1
allele frequency: 8.315316813570598e-6
allele num: 120260
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.589+44C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1198+44C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1318+44C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.150-3110C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.152+44C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.622+44C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1546+44C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3322+44C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1279+44C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1465+44C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.156-3110C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.637+44C>T
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5872
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

3-159606781-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159606781
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159606781
    reference: chr 3
allele count: 1
allele frequency: 8.326810664979099e-6
allele num: 120094
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1465+49T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.589+49T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1198+49T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.637+49T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.150-3105T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3322+49T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.622+49T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.152+49T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.156-3105T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1546+49T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1279+49T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1318+49T>C
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5825
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8680
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

3-159609853-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159609853
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159609853
    reference: chr 3
allele count: 1
allele frequency: 8.846426043878273e-6
allele num: 113040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3323-33A>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.623-33A>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1466-33A>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1319-33A>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.590-33A>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.153-33A>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1199-33A>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.638-33A>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.156-33A>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1280-33A>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.150-33A>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1547-33A>T
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 8108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

3-159609855-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159609855
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159609855
    reference: chr 3
allele count: 1
allele frequency: 8.817564588660612e-6
allele num: 113410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1199-31C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1547-31C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.150-31C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3323-31C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.153-31C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1466-31C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1280-31C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1319-31C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.638-31C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.623-31C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.590-31C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.156-31C>T
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7018
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

3-159609881-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159609881
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159609881
    reference: chr 3
allele count: 1
allele frequency: 8.362322718758362e-6
allele num: 119584
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.153-5C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3323-5C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1280-5C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.623-5C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.590-5C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.150-5C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1199-5C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1466-5C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1547-5C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1319-5C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.638-5C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.156-5C>T
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.590-5C>T
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

3-159609882-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159609882
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159609882
    reference: chr 3
allele count: 1
allele frequency: 8.353660574063554e-6
allele num: 119708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1319-4A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.590-4A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1547-4A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.623-4A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.156-4A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1280-4A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.638-4A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.150-4A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3323-4A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1466-4A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.153-4A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1199-4A>G
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.590-4A>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-159609883-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159609883
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159609883
    reference: chr 3
allele count: 1
allele frequency: 8.343902276216541e-6
allele num: 119848
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.638-3C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.623-3C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1466-3C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1319-3C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.150-3C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.590-3C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1547-3C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.153-3C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1199-3C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.156-3C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1280-3C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3323-3C>T
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.590-3C>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

3-159609899-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159609899
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159609899
    reference: chr 3
allele count: 143
allele frequency: 1.184441573070934e-3
allele num: 120732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1479G>A
  hgvsp: ENST00000476809.1:c.1479G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1293G>A
  hgvsp: ENST00000412423.2:c.1293G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1332G>A
  hgvsp: ENST00000337808.6:c.1332G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.603G>A
  hgvsp: ENST00000445224.2:c.603G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1560G>A
  hgvsp: ENST00000485419.1:c.1560G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.651G>A
  hgvsp: ENST00000482804.1:c.651G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.636G>A
  hgvsp: ENST00000527095.1:c.636G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.169G>A
  hgvsp: ENST00000473061.1:c.169G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3336G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.166G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1212G>A
  hgvsp: ENST00000460298.1:c.1212G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38896
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
hgvs: p.Glu201Glu
num of homozygotes: 2
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

3-159609911-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159609911
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159609911
    reference: chr 3
allele count: 1
allele frequency: 8.268426187759421e-6
allele num: 120942
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1344G>C
  hgvsp: ENST00000337808.6:c.1344G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.178G>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.648G>C
  hgvsp: ENST00000527095.1:c.648G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*16G>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.181G>C
  hgvsp: ENST00000473061.1:c.181G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.615G>C
  hgvsp: ENST00000445224.2:c.615G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1305G>C
  hgvsp: ENST00000412423.2:c.1305G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1572G>C
  hgvsp: ENST00000485419.1:c.1572G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1224G>C
  hgvsp: ENST00000460298.1:c.1224G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.663G>C
  hgvsp: ENST00000482804.1:c.663G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1491G>C
  hgvsp: ENST00000476809.1:c.1491G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3348G>C
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu205Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

3-159609913-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159609913
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159609913
    reference: chr 3
allele count: 1
allele frequency: 8.266375690242371e-6
allele num: 120972
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1346T>G
  hgvsp: ENSP00000337239.6:p.Leu449Arg
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1574T>G
  hgvsp: ENSP00000420182.1:p.Leu525Arg
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1493T>G
  hgvsp: ENSP00000418692.1:p.Leu498Arg
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.665T>G
  hgvsp: ENSP00000419230.1:p.Leu222Arg
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.183T>G
  hgvsp: ENSP00000418570.1:p.Leu62Arg
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1307T>G
  hgvsp: ENSP00000400942.2:p.Leu436Arg
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1226T>G
  hgvsp: ENSP00000417305.1:p.Leu409Arg
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.617T>G
  hgvsp: ENSP00000404860.2:p.Leu206Arg
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*18T>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.180T>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.650T>G
  hgvsp: ENSP00000436076.1:p.Leu217Arg
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3350T>G
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu206Arg
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

3-159609920-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159609920
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159609920
    reference: chr 3
allele count: 1
allele frequency: 8.263643275047103e-6
allele num: 121012
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.190C>G
  hgvsp: ENSP00000418570.1:p.Ile64Met
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1353C>G
  hgvsp: ENSP00000337239.6:p.Ile451Met
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1314C>G
  hgvsp: ENSP00000400942.2:p.Ile438Met
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1233C>G
  hgvsp: ENSP00000417305.1:p.Ile411Met
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.672C>G
  hgvsp: ENSP00000419230.1:p.Ile224Met
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.657C>G
  hgvsp: ENSP00000436076.1:p.Ile219Met
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1500C>G
  hgvsp: ENSP00000418692.1:p.Ile500Met
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*25C>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.624C>G
  hgvsp: ENSP00000404860.2:p.Ile208Met
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1581C>G
  hgvsp: ENSP00000420182.1:p.Ile527Met
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3357C>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.187C>G
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile208Met
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

3-159609935-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159609935
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159609935
    reference: chr 3
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.639C>T
  hgvsp: ENST00000445224.2:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*40C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000475932
  gene symbol: SCHIP1
  hgvsc: ENST00000475932.1:n.202C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1329C>T
  hgvsp: ENST00000412423.2:c.1329C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1248C>T
  hgvsp: ENST00000460298.1:c.1248C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1368C>T
  hgvsp: ENST00000337808.6:c.1368C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.205C>T
  hgvsp: ENST00000473061.1:c.205C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1596C>T
  hgvsp: ENST00000485419.1:c.1596C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.687C>T
  hgvsp: ENST00000482804.1:c.687C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3372C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.672C>T
  hgvsp: ENST00000527095.1:c.672C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1515C>T
  hgvsp: ENST00000476809.1:c.1515C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His213His
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum

3-159609984-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159609984
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159609984
    reference: chr 3
allele count: 3
allele frequency: 2.521516944593868e-5
allele num: 118976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1559+5G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.716+5G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1640+5G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.249+5G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3421G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1373+5G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1412+5G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1297G>A
  hgvsp: ENSP00000417305.1:p.Val433Met
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.683+5G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*84+5G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.731+5G>A
  variant of: http://identifiers.org/hgnc/15678
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val433Met
num of homozygotes: 1
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

3-159609989-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159609989
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159609989
    reference: chr 3
allele count: 2010
allele frequency: 1.706223897320974e-2
allele num: 117804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1373+10G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.249+10G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.716+10G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1302G>A
  hgvsp: ENSP00000417305.1:p.Trp434Ter
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.731+10G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3426G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1412+10G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1640+10G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.683+10G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*84+10G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1559+10G>A
  variant of: http://identifiers.org/hgnc/38842
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 3.25e1
  variant carriers: 288
genotype depth: GenotypeDepth
  all individuals: 16281
  bin: 2.75e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 3.75e1
  variant carriers: 288
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.75e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34205
  bin: 2.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.75e1
  variant carriers: 3
hgvs: p.Trp434Ter
num of homozygotes: 27
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

3-159609998-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159609998
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159609998
    reference: chr 3
allele count: 1
allele frequency: 8.754420982596212e-6
allele num: 114228
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3435T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.731+19T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.683+19T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1559+19T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1311T>C
  hgvsp: ENST00000460298.1:c.1311T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1373+19T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1412+19T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*84+19T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.249+19T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.716+19T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1640+19T>C
  variant of: http://identifiers.org/hgnc/38842
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45673
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser437Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

3-159610000-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159610000
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159610000
    reference: chr 3
allele count: 1
allele frequency: 8.843296781039971e-6
allele num: 113080
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*84+21G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1313G>A
  hgvsp: ENSP00000417305.1:p.Cys438Tyr
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.731+21G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.683+21G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3437G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1640+21G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1373+21G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.716+21G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.249+21G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1412+21G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1559+21G>A
  variant of: http://identifiers.org/hgnc/38842
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Cys438Tyr
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

3-159610006-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159610006
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159610006
    reference: chr 3
allele count: 1
allele frequency: 9.168255831010708e-6
allele num: 109072
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1640+27G>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1412+27G>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*84+27G>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.249+27G>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3443G>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.683+27G>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1373+27G>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.731+27G>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1319G>T
  hgvsp: ENSP00000417305.1:p.Arg440Ile
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.716+27G>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1559+27G>T
  variant of: http://identifiers.org/hgnc/38842
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg440Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

3-159610013-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159610013
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159610013
    reference: chr 3
allele count: 1
allele frequency: 9.711000621504039e-6
allele num: 102976
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*84+34A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.249+34A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3450A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1412+34A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1326A>G
  hgvsp: ENST00000460298.1:c.1326A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.683+34A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1373+34A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1640+34A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1559+34A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.716+34A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.731+34A>G
  variant of: http://identifiers.org/hgnc/15678
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13726
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys442Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

3-159610020-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159610020
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159610020
    reference: chr 3
allele count: 21
allele frequency: 2.208341220266263e-4
allele num: 95094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*84+41G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1412+41G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.731+41G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1373+41G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1559+41G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3457G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.716+41G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1333G>A
  hgvsp: ENSP00000417305.1:p.Gly445Ser
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.249+41G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1640+41G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.683+41G>A
  variant of: http://identifiers.org/hgnc/15678
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13664
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11642
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16308
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly445Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

3-159610024-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159610024
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159610024
    reference: chr 3
allele count: 1
allele frequency: 1.105412097629996e-5
allele num: 90464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1412+45G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1373+45G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*84+45G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3461G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.683+45G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.1337G>A
  hgvsp: ENSP00000417305.1:p.Gly446Asp
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1559+45G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.249+45G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.731+45G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1640+45G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.716+45G>A
  variant of: http://identifiers.org/hgnc/38842
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10183
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22549
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly446Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

3-159610060-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159610060
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159610059
    reference: chr 3
allele count: 1
allele frequency: 2.090475792290325e-5
allele num: 47836
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.683+82delA
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.731+82delA
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1640+82delA
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1412+82delA
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3498delA
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*84+82delA
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1559+82delA
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.249+82delA
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.*18delA
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1373+82delA
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.716+82delA
  variant of: http://identifiers.org/hgnc/38842
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15220
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5190
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: GA
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS

3-159610065-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159610065
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159610065
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 41338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.*22C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3502C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.683+86C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1559+86C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1640+86C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1412+86C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1373+86C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.249+86C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.716+86C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*84+86C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.731+86C>T
  variant of: http://identifiers.org/hgnc/15678
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19797
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

3-159610074-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159610074
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159610074
    reference: chr 3
allele count: 1
allele frequency: 3.068425897514575e-5
allele num: 32590
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3511C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1373+95C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1412+95C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.*31C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.249+95C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.731+95C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1640+95C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1559+95C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*84+95C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.716+95C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.683+95C>T
  variant of: http://identifiers.org/hgnc/15678
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21998
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19828
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9662
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

3-159610085-A-ATAGGAAAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159610085
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159610093
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 26018
alternate allele: ATAGGAAAG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.*42_*43insTAGGAAAG
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  variant of: http://identifiers.org/hgnc/38842
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6672
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3054
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

3-159610089-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159610089
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159610089
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 24152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000417305
  ensembl transcript: ENST00000460298
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000460298.1:c.*46A>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.249+110A>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1373+110A>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1559+110A>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000151967
  ensembl transcript: ENST00000482885
  gene symbol: SCHIP1
  hgvsc: ENST00000482885.1:n.3526A>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*84+110A>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1412+110A>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.731+110A>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1640+110A>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.683+110A>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.716+110A>T
  variant of: http://identifiers.org/hgnc/38842
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21613
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23081
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

3-159614464-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614464
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614464
    reference: chr 3
allele count: 4
allele frequency: 3.398297452976059e-5
allele num: 117706
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.684-48T>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1413-48T>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.717-48T>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1641-48T>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.250-48T>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1560-48T>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1374-48T>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*85-48T>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.732-48T>G
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6292
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15375
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21170
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6323
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4764
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

3-159614472-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614472
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614472
    reference: chr 3
allele count: 1
allele frequency: 8.504558443325623e-6
allele num: 117584
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.717-40C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1560-40C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*85-40C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1374-40C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.684-40C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1413-40C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.732-40C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.250-40C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1641-40C>T
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6206
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-159614476-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614476
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614476
    reference: chr 3
allele count: 13
allele frequency: 1.105385779637093e-4
allele num: 117606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1413-36A>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.684-36A>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.717-36A>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1560-36A>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1641-36A>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.250-36A>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*85-36A>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.732-36A>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1374-36A>T
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21231
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17288
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6160
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/3-159614478-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614478
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614478
    reference: chr 3
allele count: 17
allele frequency: 1.444865627496643e-4
allele num: 117658
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1413-34A>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*85-34A>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.684-34A>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.732-34A>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1641-34A>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1374-34A>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1560-34A>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.717-34A>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.250-34A>C
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21261
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17196
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1566
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2322
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31183
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5664
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

3-159614478-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614478
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614478
    reference: chr 3
allele count: 5868
allele frequency: 4.987336177735471e-2
allele num: 117658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1374-34A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1413-34A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.250-34A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.684-34A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*85-34A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.732-34A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.717-34A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1560-34A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1641-34A>G
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 3.75e1
  variant carriers: 560
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 1.25e1
  variant carriers: 265
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 1.75e1
  variant carriers: 765
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 9.75e1
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 7.5e0
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 17196
  bin: 2.25e1
  variant carriers: 1058
genotype depth: GenotypeDepth
  all individuals: 21261
  bin: 2.75e1
  variant carriers: 1014
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.75e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 3.25e1
  variant carriers: 808
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.25e1
  variant carriers: 330
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2322
  bin: 2.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 5.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 4.75e1
  variant carriers: 20
num of homozygotes: 163
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

3-159614479-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614479
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614479
    reference: chr 3
allele count: 2
allele frequency: 1.700738120344229e-5
allele num: 117596
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1374-33T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1560-33T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.717-33T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*85-33T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1413-33T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.732-33T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.250-33T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.684-33T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1641-33T>C
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18152
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

3-159614482-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614482
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614482
    reference: chr 3
allele count: 2
allele frequency: 1.701258931609391e-5
allele num: 117560
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.732-30T>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1374-30T>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*85-30T>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.250-30T>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1641-30T>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1560-30T>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.684-30T>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.717-30T>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1413-30T>G
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18741
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

3-159614483-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614483
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614483
    reference: chr 3
allele count: 1
allele frequency: 8.507452528414892e-6
allele num: 117544
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1413-29G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.717-29G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.684-29G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1374-29G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1560-29G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*85-29G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.732-29G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1641-29G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.250-29G>A
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18943
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6201
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

3-159614488-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614488
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614488
    reference: chr 3
allele count: 1
allele frequency: 8.499787505312367e-6
allele num: 117650
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1560-24A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1413-24A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1374-24A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.684-24A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*85-24A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.250-24A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.717-24A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1641-24A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.732-24A>G
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6202
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/3-159614491-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614491
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614491
    reference: chr 3
allele count: 2
allele frequency: 1.700275444622029e-5
allele num: 117628
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.684-21A>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.250-21A>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1560-21A>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1641-21A>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*85-21A>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.717-21A>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1374-21A>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1413-21A>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.732-21A>C
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22596
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6019
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

3-159614509-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614509
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614509
    reference: chr 3
allele count: 1
allele frequency: 8.475438180153914e-6
allele num: 117988
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.732-3C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1374-3C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1560-3C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.717-3C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1641-3C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.250-3C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1413-3C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.684-3C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*85-3C>T
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
hgvs: c.684-3C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff

3-159614512-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614512
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614512
    reference: chr 3
allele count: 17
allele frequency: 1.440433824775462e-4
allele num: 118020
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*85A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1560A>G
  hgvsp: ENST00000476809.1:c.1560A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.732A>G
  hgvsp: ENST00000482804.1:c.732A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1374A>G
  hgvsp: ENST00000412423.2:c.1374A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.717A>G
  hgvsp: ENST00000527095.1:c.717A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1413A>G
  hgvsp: ENST00000337808.6:c.1413A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.684A>G
  hgvsp: ENST00000445224.2:c.684A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.250A>G
  hgvsp: ENST00000473061.1:c.250A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1641A>G
  hgvsp: ENST00000485419.1:c.1641A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23028
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21858
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5869
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
hgvs: c.684A>G
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

3-159614515-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614515
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614515
    reference: chr 3
allele count: 3
allele frequency: 2.541985120913759e-5
allele num: 118018
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.687T>C
  hgvsp: ENST00000445224.2:c.687T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1377T>C
  hgvsp: ENST00000412423.2:c.1377T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1563T>C
  hgvsp: ENST00000476809.1:c.1563T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.735T>C
  hgvsp: ENST00000482804.1:c.735T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1416T>C
  hgvsp: ENST00000337808.6:c.1416T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.253T>C
  hgvsp: ENST00000473061.1:c.253T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.720T>C
  hgvsp: ENST00000527095.1:c.720T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1644T>C
  hgvsp: ENST00000485419.1:c.1644T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*88T>C
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2454
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3974
  bin: 9.75e1
  variant carriers: 3
hgvs: p.His229His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: T
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-159614530-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614530
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614530
    reference: chr 3
allele count: 1
allele frequency: 8.520355128401752e-6
allele num: 117366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.268G>A
  hgvsp: ENST00000473061.1:c.268G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1578G>A
  hgvsp: ENST00000476809.1:c.1578G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.735G>A
  hgvsp: ENST00000527095.1:c.735G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.702G>A
  hgvsp: ENST00000445224.2:c.702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1659G>A
  hgvsp: ENST00000485419.1:c.1659G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.750G>A
  hgvsp: ENST00000482804.1:c.750G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1392G>A
  hgvsp: ENST00000412423.2:c.1392G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1431G>A
  hgvsp: ENST00000337808.6:c.1431G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*103G>A
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22102
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5763
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln234Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS

3-159614539-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614539
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614539
    reference: chr 3
allele count: 2
allele frequency: 1.713091444821324e-5
allele num: 116748
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.277G>C
  hgvsp: ENSP00000418570.1:p.Met93Ile
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*112G>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1440G>C
  hgvsp: ENSP00000337239.6:p.Met480Ile
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.744G>C
  hgvsp: ENSP00000436076.1:p.Met248Ile
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1668G>C
  hgvsp: ENSP00000420182.1:p.Met556Ile
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.711G>C
  hgvsp: ENSP00000404860.2:p.Met237Ile
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1587G>C
  hgvsp: ENSP00000418692.1:p.Met529Ile
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1401G>C
  hgvsp: ENSP00000400942.2:p.Met467Ile
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.759G>C
  hgvsp: ENSP00000419230.1:p.Met253Ile
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21770
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met237Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

3-159614540-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614540
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614540
    reference: chr 3
allele count: 1
allele frequency: 8.574270329594951e-6
allele num: 116628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.760G>A
  hgvsp: ENSP00000419230.1:p.Ala254Thr
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1588G>A
  hgvsp: ENSP00000418692.1:p.Ala530Thr
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1669G>A
  hgvsp: ENSP00000420182.1:p.Ala557Thr
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.278G>A
  hgvsp: ENSP00000418570.1:p.Ala94Thr
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.712G>A
  hgvsp: ENSP00000404860.2:p.Ala238Thr
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1441G>A
  hgvsp: ENSP00000337239.6:p.Ala481Thr
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.745G>A
  hgvsp: ENSP00000436076.1:p.Ala249Thr
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*113G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1402G>A
  hgvsp: ENSP00000400942.2:p.Ala468Thr
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5673
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala238Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

3-159614548-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614548
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614548
    reference: chr 3
allele count: 1
allele frequency: 8.674230595746157e-6
allele num: 115284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1449A>G
  hgvsp: ENST00000337808.6:c.1449A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.720A>G
  hgvsp: ENST00000445224.2:c.720A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.753A>G
  hgvsp: ENST00000527095.1:c.753A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.286A>G
  hgvsp: ENST00000473061.1:c.286A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1677A>G
  hgvsp: ENST00000485419.1:c.1677A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1596A>G
  hgvsp: ENST00000476809.1:c.1596A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1410A>G
  hgvsp: ENST00000412423.2:c.1410A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*121A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.768A>G
  hgvsp: ENST00000482804.1:c.768A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys240Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

3-159614550-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614550
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614550
    reference: chr 3
allele count: 3
allele frequency: 2.602494925134896e-5
allele num: 115274
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1598T>G
  hgvsp: ENSP00000418692.1:p.Met533Arg
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.288T>G
  hgvsp: ENSP00000418570.1:p.Met97Arg
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1679T>G
  hgvsp: ENSP00000420182.1:p.Met560Arg
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.770T>G
  hgvsp: ENSP00000419230.1:p.Met257Arg
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1451T>G
  hgvsp: ENSP00000337239.6:p.Met484Arg
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*123T>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1412T>G
  hgvsp: ENSP00000400942.2:p.Met471Arg
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.722T>G
  hgvsp: ENSP00000404860.2:p.Met241Arg
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.755T>G
  hgvsp: ENSP00000436076.1:p.Met252Arg
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22123
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20548
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met241Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

3-159614553-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614553
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614553
    reference: chr 3
allele count: 4
allele frequency: 3.487844860660598e-5
allele num: 114684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.291C>T
  hgvsp: ENSP00000418570.1:p.Pro98Leu
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1682C>T
  hgvsp: ENSP00000420182.1:p.Pro561Leu
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1601C>T
  hgvsp: ENSP00000418692.1:p.Pro534Leu
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.758C>T
  hgvsp: ENSP00000436076.1:p.Pro253Leu
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.725C>T
  hgvsp: ENSP00000404860.2:p.Pro242Leu
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.773C>T
  hgvsp: ENSP00000419230.1:p.Pro258Leu
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1415C>T
  hgvsp: ENSP00000400942.2:p.Pro472Leu
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1454C>T
  hgvsp: ENSP00000337239.6:p.Pro485Leu
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*126C>T
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21857
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38176
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro242Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-159614554-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614554
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614554
    reference: chr 3
allele count: 1
allele frequency: 8.731184297838158e-6
allele num: 114532
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.1683T>G
  hgvsp: ENST00000485419.1:c.1683T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418692
  ensembl transcript: ENST00000476809
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000476809.1:c.1602T>G
  hgvsp: ENST00000476809.1:c.1602T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.774T>G
  hgvsp: ENST00000482804.1:c.774T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.292T>G
  hgvsp: ENST00000473061.1:c.292T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.1455T>G
  hgvsp: ENST00000337808.6:c.1455T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*127T>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.726T>G
  hgvsp: ENST00000445224.2:c.726T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.759T>G
  hgvsp: ENST00000527095.1:c.759T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.1416T>G
  hgvsp: ENST00000412423.2:c.1416T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3955
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro242Pro
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-159614571-C-CCTTCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614571
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614576
    reference: chr 3
allele count: 1
allele frequency: 9.058135111143318e-6
allele num: 110398
alternate allele: CCTTCT
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.*9_*10insTTCTC
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.*9_*10insTTCTC
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.*9_*10insTTCTC
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.*9_*10insTTCTC
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.*9_*10insTTCTC
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.*9_*10insTTCTC
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.*9_*10insTTCTC
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*145_*146insTTCTC
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4434
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9702
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

3-159614571-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614571
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614571
    reference: chr 3
allele count: 1
allele frequency: 9.058135111143318e-6
allele num: 110398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.*8C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.*8C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*144C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.*8C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.*8C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.*8C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.*8C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.*8C>T
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4434
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9702
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

3-159614572-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614572
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614572
    reference: chr 3
allele count: 1
allele frequency: 9.061418293191251e-6
allele num: 110358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*145C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.*9C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.*9C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.*9C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1887
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

3-159614573-A-ATACTTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614573
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614579
    reference: chr 3
allele count: 1
allele frequency: 9.105975341018777e-6
allele num: 109818
alternate allele: ATACTTG
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.*11_*12insACTTGT
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.*11_*12insACTTGT
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.*11_*12insACTTGT
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.*11_*12insACTTGT
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.*11_*12insACTTGT
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.*11_*12insACTTGT
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*147_*148insACTTGT
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.*11_*12insACTTGT
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9095
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31516
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10462
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4307
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

3-159614577-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614577
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614577
    reference: chr 3
allele count: 1
allele frequency: 9.222539887485013e-6
allele num: 108430
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.*14A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.*14A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.*14A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.*14A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.*14A>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*150A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.*14A>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.*14A>G
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27952
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/3-159614587-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614587
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614587
    reference: chr 3
allele count: 4
allele frequency: 3.798886926130644e-5
allele num: 105294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.*24C>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.*24C>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.*24C>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.*24C>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.*24C>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*160C>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.*24C>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.*24C>A
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6883
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17711
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12038
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3941
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 14828
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-159614598-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614598
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614598
    reference: chr 3
allele count: 1
allele frequency: 9.782629962239048e-6
allele num: 102222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.*35T>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.*35T>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*171T>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.*35T>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.*35T>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.*35T>G
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.*35T>G
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.*35T>G
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11921
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14753
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

3-159614609-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614609
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614609
    reference: chr 3
allele count: 1
allele frequency: 1.028489149439473e-5
allele num: 97230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.*46C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.*46C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*182C>T
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.*46C>T
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18840
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12413
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

3-159614612-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614612
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614612
    reference: chr 3
allele count: 6
allele frequency: 6.223549912870301e-5
allele num: 96408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.*49T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.*49T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.*49T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*185T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.*49T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.*49T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.*49T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.*49T>C
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14389
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18568
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10407
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5295
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1660
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

3-159614614-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614614
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614614
    reference: chr 3
allele count: 1
allele frequency: 1.047712842864028e-5
allele num: 95446
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.*51G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*187G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.*51G>A
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.*51G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.*51G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.*51G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.*51G>A
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.*51G>A
  variant of: http://identifiers.org/hgnc/38842
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7100
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10880
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5254
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3937
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8580
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

3-159614615-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159614615
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159614615
    reference: chr 3
allele count: 1
allele frequency: 1.048679712242287e-5
allele num: 95358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000436076
  ensembl transcript: ENST00000527095
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000527095.1:c.*52T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000337239
  ensembl transcript: ENST00000337808
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000337808.6:c.*52T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000420182
  ensembl transcript: ENST00000485419
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000485419.1:c.*52T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000400942
  ensembl transcript: ENST00000412423
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000412423.2:c.*52T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000250588
  ensembl protein: ENSP00000418570
  ensembl transcript: ENST00000473061
  gene symbol: IQCJ-SCHIP1
  hgvsc: ENST00000473061.1:c.*52T>C
  variant of: http://identifiers.org/hgnc/38842
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000419230
  ensembl transcript: ENST00000482804
  gene symbol: SCHIP1
  hgvsc: ENST00000482804.1:c.*52T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000404860
  ensembl transcript: ENST00000445224
  gene symbol: SCHIP1
  hgvsc: ENST00000445224.2:c.*52T>C
  variant of: http://identifiers.org/hgnc/15678
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000151967
  ensembl protein: ENSP00000420376
  ensembl transcript: ENST00000495954
  gene symbol: SCHIP1
  hgvsc: ENST00000495954.1:c.*188T>C
  variant of: http://identifiers.org/hgnc/15678
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7092
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10571
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2775
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ

3-159706807-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159706807
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159706807
    reference: chr 3
allele count: 2
allele frequency: 1.701085292416562e-5
allele num: 117572
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244040
  ensembl transcript: ENST00000497452
  gene symbol: IL12A-AS1
  hgvsc: ENST00000497452.1:n.1350+77G>A
  variant of: http://identifiers.org/hgnc/49094
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168811
  ensembl protein: ENSP00000419046
  ensembl transcript: ENST00000466512
  gene symbol: IL12A
  hgvsc: ENST00000466512.1:c.-37C>T
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168811
  ensembl protein: ENSP00000420184
  ensembl transcript: ENST00000480787
  gene symbol: IL12A
  hgvsc: ENST00000480787.1:c.-37C>T
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168811
  ensembl transcript: ENST00000496308
  gene symbol: IL12A
  hgvsc: ENST00000496308.1:n.151C>T
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168811
  ensembl protein: ENSP00000303231
  ensembl transcript: ENST00000305579
  gene symbol: IL12A
  hgvsc: ENST00000305579.2:c.-37C>T
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168811
  ensembl transcript: ENST00000468862
  gene symbol: IL12A
  hgvsc: ENST00000468862.1:n.160C>T
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168811
  ensembl transcript: ENST00000480088
  gene symbol: IL12A
  hgvsc: ENST00000480088.1:n.185C>T
  variant of: http://identifiers.org/hgnc/5969
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13859
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9007
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3272
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31531
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2853
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

3-159706808-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159706808
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159706808
    reference: chr 3
allele count: 1
allele frequency: 8.503401360544217e-6
allele num: 117600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168811
  ensembl transcript: ENST00000480088
  gene symbol: IL12A
  hgvsc: ENST00000480088.1:n.186G>A
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168811
  ensembl protein: ENSP00000303231
  ensembl transcript: ENST00000305579
  gene symbol: IL12A
  hgvsc: ENST00000305579.2:c.-36G>A
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168811
  ensembl transcript: ENST00000496308
  gene symbol: IL12A
  hgvsc: ENST00000496308.1:n.152G>A
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168811
  ensembl protein: ENSP00000419046
  ensembl transcript: ENST00000466512
  gene symbol: IL12A
  hgvsc: ENST00000466512.1:c.-36G>A
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168811
  ensembl protein: ENSP00000420184
  ensembl transcript: ENST00000480787
  gene symbol: IL12A
  hgvsc: ENST00000480787.1:c.-36G>A
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244040
  ensembl transcript: ENST00000497452
  gene symbol: IL12A-AS1
  hgvsc: ENST00000497452.1:n.1350+76C>T
  variant of: http://identifiers.org/hgnc/49094
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168811
  ensembl transcript: ENST00000468862
  gene symbol: IL12A
  hgvsc: ENST00000468862.1:n.161G>A
  variant of: http://identifiers.org/hgnc/5969
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9508
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2745
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32144
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

3-159706808-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159706808
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159706808
    reference: chr 3
allele count: 1
allele frequency: 8.503401360544217e-6
allele num: 117600
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244040
  ensembl transcript: ENST00000497452
  gene symbol: IL12A-AS1
  hgvsc: ENST00000497452.1:n.1350+76C>G
  variant of: http://identifiers.org/hgnc/49094
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168811
  ensembl protein: ENSP00000419046
  ensembl transcript: ENST00000466512
  gene symbol: IL12A
  hgvsc: ENST00000466512.1:c.-36G>C
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168811
  ensembl transcript: ENST00000468862
  gene symbol: IL12A
  hgvsc: ENST00000468862.1:n.161G>C
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168811
  ensembl protein: ENSP00000303231
  ensembl transcript: ENST00000305579
  gene symbol: IL12A
  hgvsc: ENST00000305579.2:c.-36G>C
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168811
  ensembl protein: ENSP00000420184
  ensembl transcript: ENST00000480787
  gene symbol: IL12A
  hgvsc: ENST00000480787.1:c.-36G>C
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168811
  ensembl transcript: ENST00000480088
  gene symbol: IL12A
  hgvsc: ENST00000480088.1:n.186G>C
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168811
  ensembl transcript: ENST00000496308
  gene symbol: IL12A
  hgvsc: ENST00000496308.1:n.152G>C
  variant of: http://identifiers.org/hgnc/5969
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25100
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3268
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2859
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9013
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32144
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

3-159706811-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159706811
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159706811
    reference: chr 3
allele count: 1
allele frequency: 8.501955449753444e-6
allele num: 117620
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168811
  ensembl transcript: ENST00000480088
  gene symbol: IL12A
  hgvsc: ENST00000480088.1:n.189A>G
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168811
  ensembl protein: ENSP00000419046
  ensembl transcript: ENST00000466512
  gene symbol: IL12A
  hgvsc: ENST00000466512.1:c.-33A>G
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168811
  ensembl transcript: ENST00000468862
  gene symbol: IL12A
  hgvsc: ENST00000468862.1:n.164A>G
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168811
  ensembl protein: ENSP00000420184
  ensembl transcript: ENST00000480787
  gene symbol: IL12A
  hgvsc: ENST00000480787.1:c.-33A>G
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244040
  ensembl transcript: ENST00000497452
  gene symbol: IL12A-AS1
  hgvsc: ENST00000497452.1:n.1350+73T>C
  variant of: http://identifiers.org/hgnc/49094
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168811
  ensembl protein: ENSP00000303231
  ensembl transcript: ENST00000305579
  gene symbol: IL12A
  hgvsc: ENST00000305579.2:c.-33A>G
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168811
  ensembl transcript: ENST00000496308
  gene symbol: IL12A
  hgvsc: ENST00000496308.1:n.155A>G
  variant of: http://identifiers.org/hgnc/5969
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2942
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32819
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9033
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-159706821-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 159706821
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 159706821
    reference: chr 3
allele count: 1
allele frequency: 8.522097799594348e-6
allele num: 117342
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168811
  ensembl transcript: ENST00000480088
  gene symbol: IL12A
  hgvsc: ENST00000480088.1:n.199C>G
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168811
  ensembl protein: ENSP00000420184
  ensembl transcript: ENST00000480787
  gene symbol: IL12A
  hgvsc: ENST00000480787.1:c.-23C>G
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168811
  ensembl transcript: ENST00000468862
  gene symbol: IL12A
  hgvsc: ENST00000468862.1:n.174C>G
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168811
  ensembl protein: ENSP00000303231
  ensembl transcript: ENST00000305579
  gene symbol: IL12A
  hgvsc: ENST00000305579.2:c.-23C>G
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000168811
  ensembl protein: ENSP00000419046
  ensembl transcript: ENST00000466512
  gene symbol: IL12A
  hgvsc: ENST00000466512.1:c.-23C>G
  variant of: http://identifiers.org/hgnc/5969
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244040
  ensembl transcript: ENST00000497452
  gene symbol: IL12A-AS1
  hgvsc: ENST00000497452.1:n.1350+63G>C
  variant of: http://identifiers.org/hgnc/49094
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000168811
  ensembl transcript: ENST00000496308
  gene symbol: IL12A
  hgvsc: ENST00000496308.1:n.165C>G
  variant of: http://identifiers.org/hgnc/5969
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14261
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9326
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8864
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 4809
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6976
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4023
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7879
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1850
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22939
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2844
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3214
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12978
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4934
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.951e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.21207e6

QD
type: SiteQuality
SIO_000300: 1.407e1

FS
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.058e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.102e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

GenotypeDepth
all individuals: 1612
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 211
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13450
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22946
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1850
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3215
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7876
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4023
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12979
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4934
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.211906e6

VQSLOD
type: SiteQuality
SIO_000300: 9.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.368e0

QD
type: SiteQuality
SIO_000300: 1.102e1

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

GenotypeDepth
all individuals: 596
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4808
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13449
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22946
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12978
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1850
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4022
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3215
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4933
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7877
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.893e1

FS
type: SiteQuality
SIO_000300: 6.57e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.799e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-2

QD
type: SiteQuality
SIO_000300: 1.083e1

DP
type: SiteQuality
SIO_000300: 2.211923e6

GenotypeDepth
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 17786
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1240
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22909
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12973
bin: 9.75e1
variant carriers: 64

GenotypeQuality
all individuals: 2835
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3203
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4922
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4015
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7858
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 4.805843906189927e-4
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 57
allele frequency: 6.588072122052704e-3
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.819505094614265e-4
allele num: 16488
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.725e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.29e-1

FS
type: SiteQuality
SIO_000300: 2.658e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

QD
type: SiteQuality
SIO_000300: 1.303e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

DP
type: SiteQuality
SIO_000300: 2.210618e6

GenotypeDepth
all individuals: 1229
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13451
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1609
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7863
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GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4013
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
all individuals: 1
bin: 2.5e0
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GenotypeQuality
all individuals: 22904
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
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GenotypeQuality
all individuals: 2837
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4927
bin: 7.75e1
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GenotypeQuality
all individuals: 12915
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.498965237995261e-5
allele num: 66682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-3

DP
type: SiteQuality
SIO_000300: 2.207356e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.054e-1

FS
type: SiteQuality
SIO_000300: 1.163e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.23e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeDepth
all individuals: 209
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3949
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.506e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

DP
type: SiteQuality
SIO_000300: 2.159986e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 1.311e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e-1

GenotypeDepth
all individuals: 1600
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2800
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12865
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4692
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variant carriers: 0

GenotypeQuality
all individuals: 654
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1490
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6806
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3910
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505208019748329e-5
allele num: 66436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16102
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.545e1

DP
type: SiteQuality
SIO_000300: 2.123451e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

GenotypeDepth
all individuals: 526
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3909
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6774
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variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.242081728977767e-4
allele num: 16102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.118817e6

FS
type: SiteQuality
SIO_000300: 2.008e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
type: SiteQuality
SIO_000300: 1.65e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 30
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4591
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1796
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -3.633e0

QD
type: SiteQuality
SIO_000300: 1.034e1

ReadPosRankSum
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VQSLOD
type: SiteQuality
SIO_000300: -1.001e0

ClippingRankSum
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SIO_000300: 2.25e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.088217e6

MQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509433962264151e-5
allele num: 66250
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.641e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.072481e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 178
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GenotypeQuality
all individuals: 328
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GenotypeQuality
all individuals: 117
bin: 1.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.577884372633173e-5
allele num: 63376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 840
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.586e1

DP
type: SiteQuality
SIO_000300: 1.312943e6

MQRankSum
type: SiteQuality
SIO_000300: -1.181e0

ClippingRankSum
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.9903e1

BaseQRankSum
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SIO_000300: -2.312e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.92e-1

QD
type: SiteQuality
SIO_000300: 1.18e0

GenotypeDepth
all individuals: 8
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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African
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
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ClippingRankSum
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MQ
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DP
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InbreedingCoeff
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QD
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BaseQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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East Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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QD
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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FS
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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FS
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VQSLOD
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DP
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MQRankSum
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BaseQRankSum
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MQ
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QD
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InbreedingCoeff
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SIO_000300: 1.27e-2

ClippingRankSum
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SIO_000300: 7.52e-1

ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.388143605468251e-5
allele num: 15654
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -3.513e0

VQSLOD
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ReadPosRankSum
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ClippingRankSum
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FS
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QD
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DP
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MQRankSum
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InbreedingCoeff
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SIO_000300: 1.3e-2

MQ
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SIO_000300: 5.871e1

GenotypeDepth
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variant carriers: 9

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 102
allele frequency: 1.534019130120917e-3
allele num: 66492
num of homozygotes: 1

East Asian
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allele num: 8638
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European (Finnish)
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Latino
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allele frequency: 5.205622071837585e-4
allele num: 11526
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South Asian
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allele frequency: 1.97555253735029e-3
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African
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Other
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allele frequency: 3.333333333333334e-3
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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African
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Latino
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Other
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South Asian
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ReadPosRankSum
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MQ
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DP
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VQSLOD
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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African
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South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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FS
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MQRankSum
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MQ
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

QD
type: SiteQuality
SIO_000300: 1.412e1

GenotypeDepth
all individuals: 148
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4161
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52885
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 146
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.487837e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.75e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.134e1

GenotypeDepth
all individuals: 83
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 186
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.346e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.11e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.987e-1

DP
type: SiteQuality
SIO_000300: 1.488879e6

MQ
type: SiteQuality
SIO_000300: 5.886e1

MQRankSum
type: SiteQuality
SIO_000300: -9.15e-1

GenotypeDepth
all individuals: 54
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
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variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
all individuals: 923
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variant carriers: 2

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 116
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GenotypeQuality
all individuals: 345
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 144
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variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50645
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variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5194797301404e-5
allele num: 65812
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.275998468801837e-4
allele num: 15674
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.886e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.91e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.41e-1

QD
type: SiteQuality
SIO_000300: 2.027e1

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 1.464331e6

VQSLOD
type: SiteQuality
SIO_000300: -1.594e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.398e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.475e0

GenotypeQuality
all individuals: 3677
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 607
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variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 3118
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
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variant carriers: 1

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2694
bin: 9.75e1
variant carriers: 1972

GenotypeQuality
all individuals: 90
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
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variant carriers: 0

GenotypeQuality
all individuals: 112
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variant carriers: 2

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 211
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variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 48323
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 16
allele frequency: 1.839080459770115e-2
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 195
allele frequency: 3.009259259259259e-2
allele num: 6480
num of homozygotes: 1

South Asian
type: Population
allele count: 65
allele frequency: 4.212026956972524e-3
allele num: 15432
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1639
allele frequency: 2.512724596798921e-2
allele num: 65228
num of homozygotes: 24

African
type: Population
allele count: 30
allele frequency: 2.972062611452348e-3
allele num: 10094
num of homozygotes: 1

Latino
type: Population
allele count: 65
allele frequency: 5.806682151152403e-3
allele num: 11194
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

DP
type: SiteQuality
SIO_000300: 1.485635e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.899e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

QD
type: SiteQuality
SIO_000300: 1.337e1

VQSLOD
type: SiteQuality
SIO_000300: 6.75e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

GenotypeQuality
all individuals: 454
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
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variant carriers: 0

GenotypeQuality
all individuals: 631
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variant carriers: 0

GenotypeQuality
all individuals: 6620
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variant carriers: 0

GenotypeQuality
all individuals: 294
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variant carriers: 0

GenotypeQuality
all individuals: 443
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 754
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variant carriers: 1

GenotypeQuality
all individuals: 159
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 128
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variant carriers: 0

GenotypeQuality
all individuals: 304
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variant carriers: 0

GenotypeQuality
all individuals: 57
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GenotypeQuality
all individuals: 3771
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variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
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GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10840
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.083e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

DP
type: SiteQuality
SIO_000300: 1.394962e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.331e0

GenotypeQuality
all individuals: 44426
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 320
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GenotypeQuality
all individuals: 750
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 75
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 552
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variant carriers: 0

GenotypeQuality
all individuals: 115
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GenotypeQuality
all individuals: 524
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14862
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.029018316526034e-4
allele num: 9718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.075e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.51e-1

FS
type: SiteQuality
SIO_000300: 1.2729e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.707e0

DP
type: SiteQuality
SIO_000300: 1.379842e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.735e0

MQRankSum
type: SiteQuality
SIO_000300: 9.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 565
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 109
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GenotypeQuality
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GenotypeQuality
all individuals: 511
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GenotypeQuality
all individuals: 126
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GenotypeQuality
all individuals: 247
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GenotypeQuality
all individuals: 40431
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60230
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.05909764880322e-4
allele num: 9442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.415e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

QD
type: SiteQuality
SIO_000300: 9.42e0

MQRankSum
type: SiteQuality
SIO_000300: -1.291e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

MQ
type: SiteQuality
SIO_000300: 5.923e1

DP
type: SiteQuality
SIO_000300: 1.322449e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.001e0

GenotypeQuality
all individuals: 17186
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 34067
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 233
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variant carriers: 0

GenotypeQuality
all individuals: 124
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.764602082230457e-5
allele num: 56670
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9014
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9410
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: -4.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-1

BaseQRankSum
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SIO_000300: 2.1e0

FS
type: SiteQuality
SIO_000300: 6.429e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.66e-1

QD
type: SiteQuality
SIO_000300: 1.418e1

DP
type: SiteQuality
SIO_000300: 1.230023e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6910
num of homozygotes: 0

European (Non-Finnish)
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allele count: 21
allele frequency: 4.037685060565276e-4
allele num: 52010
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5264
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e-1

FS
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SIO_000300: 2.764e0

MQ
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VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

MQRankSum
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SIO_000300: 3.72e-1

QD
type: SiteQuality
SIO_000300: 1.485e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

DP
type: SiteQuality
SIO_000300: 1.117235e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 49340
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.292323597828896e-4
allele num: 7738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.931e1

MQRankSum
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SIO_000300: 4.37e-1

InbreedingCoeff
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SIO_000300: -3.5e-3

FS
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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SIO_000300: -1.929e0

DP
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SIO_000300: 1.051545e6

BaseQRankSum
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SIO_000300: -3.472e0

VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9256
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.061078622482131e-5
allele num: 24624
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 380
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3228
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2554
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.01e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.26503e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

QD
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SIO_000300: 2.591e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.28e0

MQRankSum
type: SiteQuality
SIO_000300: 2.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2128
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 20916
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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SIO_000300: -6.840000000000001e-1

InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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DP
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SIO_000300: 5.70003e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1916
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Latino
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allele frequency: 0.0e0
allele num: 1304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 2.74423710208562e-4
allele num: 3644
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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MQ
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QD
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FS
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BaseQRankSum
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DP
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Latino
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Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 12462
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
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DP
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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FS
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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East Asian
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African
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South Asian
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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MQRankSum
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DP
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QD
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MQ
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29513
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1914
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.113590511707526e-5
allele num: 65428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0248e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.285e0

DP
type: SiteQuality
SIO_000300: 1.656575e6

QD
type: SiteQuality
SIO_000300: 8.76e0

MQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.707e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 2375
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.811061163329247e-5
allele num: 14682
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.866e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.34e0

VQSLOD
type: SiteQuality
SIO_000300: -2.23e0

DP
type: SiteQuality
SIO_000300: 1.65989e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.016e0

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

GenotypeQuality
all individuals: 107
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 13

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 1.525463506219197e-3
allele num: 8522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14734
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.171e0

VQSLOD
type: SiteQuality
SIO_000300: 7.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 9.970000000000001e0

DP
type: SiteQuality
SIO_000300: 1.664085e6

GenotypeQuality
all individuals: 1548
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9059
bin: 9.75e1
variant carriers: 15

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.144781144781145e-3
allele num: 14850
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

QD
type: SiteQuality
SIO_000300: 1.195e1

FS
type: SiteQuality
SIO_000300: 4.618e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.55e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.690169e6

GenotypeQuality
all individuals: 1548
bin: 7.75e1
variant carriers: 37

GenotypeQuality
all individuals: 1602
bin: 3.75e1
variant carriers: 11

GenotypeQuality
all individuals: 772
bin: 8.25e1
variant carriers: 30

GenotypeQuality
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bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 6

GenotypeQuality
all individuals: 5664
bin: 6.75e1
variant carriers: 32

GenotypeQuality
all individuals: 9059
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variant carriers: 5417

GenotypeQuality
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bin: 4.25e1
variant carriers: 9

GenotypeQuality
all individuals: 640
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variant carriers: 27

GenotypeQuality
all individuals: 1566
bin: 7.25e1
variant carriers: 28

GenotypeQuality
all individuals: 311
bin: 8.75e1
variant carriers: 32

GenotypeQuality
all individuals: 1425
bin: 3.25e1
variant carriers: 9

GenotypeQuality
all individuals: 31183
bin: 6.25e1
variant carriers: 27

GenotypeQuality
all individuals: 370
bin: 9.25e1
variant carriers: 36

European (Finnish)
type: Population
allele count: 251
allele frequency: 3.814589665653496e-2
allele num: 6580
num of homozygotes: 5

European (Non-Finnish)
type: Population
allele count: 4004
allele frequency: 6.134142231209976e-2
allele num: 65274
num of homozygotes: 110

Latino
type: Population
allele count: 465
allele frequency: 4.078947368421053e-2
allele num: 11400
num of homozygotes: 6

South Asian
type: Population
allele count: 915
allele frequency: 6.161616161616162e-2
allele num: 14850
num of homozygotes: 38

East Asian
type: Population
allele count: 32
allele frequency: 3.756750410894576e-3
allele num: 8518
num of homozygotes: 0

African
type: Population
allele count: 147
allele frequency: 1.447135262847017e-2
allele num: 10158
num of homozygotes: 2

Other
type: Population
allele count: 54
allele frequency: 6.150341685649203e-2
allele num: 878
num of homozygotes: 2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

FS
type: SiteQuality
SIO_000300: 4.618e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.28e0

DP
type: SiteQuality
SIO_000300: 1.690169e6

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.55e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

QD
type: SiteQuality
SIO_000300: 1.195e1

GenotypeQuality
all individuals: 981
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6249
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GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 367
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GenotypeQuality
all individuals: 3982
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.066826141626031e-5
allele num: 65214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.614e0

DP
type: SiteQuality
SIO_000300: 1.645276e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.276e1

VQSLOD
type: SiteQuality
SIO_000300: 4.39e-1

GenotypeQuality
all individuals: 406
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1200
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GenotypeQuality
all individuals: 311
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GenotypeQuality
all individuals: 35788
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.344989912575656e-4
allele num: 14870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.551e0

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

DP
type: SiteQuality
SIO_000300: 1.649307e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.34e-1

QD
type: SiteQuality
SIO_000300: 7.11e0

VQSLOD
type: SiteQuality
SIO_000300: -6.684e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1387
bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 1615
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GenotypeQuality
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GenotypeQuality
all individuals: 766
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GenotypeQuality
all individuals: 1661
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GenotypeQuality
all individuals: 3978
bin: 9.75e1
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GenotypeQuality
all individuals: 1488
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GenotypeQuality
all individuals: 1137
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36314
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534825183411609e-5
allele num: 65154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.171e0

VQSLOD
type: SiteQuality
SIO_000300: -6.477000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.68e0

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

DP
type: SiteQuality
SIO_000300: 1.651721e6

QD
type: SiteQuality
SIO_000300: 1.14e1

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 2.75e1
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GenotypeQuality
all individuals: 76
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GenotypeQuality
all individuals: 301
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GenotypeQuality
all individuals: 1225
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GenotypeQuality
all individuals: 3976
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GenotypeQuality
all individuals: 1196
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 777
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GenotypeQuality
all individuals: 37591
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GenotypeQuality
all individuals: 1629
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GenotypeQuality
all individuals: 153
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variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 4.75e1
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GenotypeQuality
all individuals: 355
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534872298624754e-5
allele num: 65152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0864e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

VQSLOD
type: SiteQuality
SIO_000300: -7.937e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.117e0

DP
type: SiteQuality
SIO_000300: 1.658631e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

QD
type: SiteQuality
SIO_000300: 1.884e1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 300
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.778089887640449e-5
allele num: 11392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.626027034190299e-5
allele num: 15092
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

QD
type: SiteQuality
SIO_000300: 1.261e1

FS
type: SiteQuality
SIO_000300: 4.351e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.35e-1

DP
type: SiteQuality
SIO_000300: 1.660181e6

MQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64978
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.402868485081316e-5
allele num: 15618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.247e0

QD
type: SiteQuality
SIO_000300: 5.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.012e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.679302e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 17

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 560
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GenotypeQuality
all individuals: 290
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.463054187192118e-4
allele num: 64960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.179245283018868e-4
allele num: 8480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15688
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.679916e6

QD
type: SiteQuality
SIO_000300: 1.288e1

VQSLOD
type: SiteQuality
SIO_000300: 3.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 288
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variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540215014015957e-5
allele num: 64926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.991635132443736e-4
allele num: 10042
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.657e0

DP
type: SiteQuality
SIO_000300: 1.681865e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

MQRankSum
type: SiteQuality
SIO_000300: 9.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

QD
type: SiteQuality
SIO_000300: 1.464e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 349
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.552216565255184e-5
allele num: 64424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.008e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.51e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

MQ
type: SiteQuality
SIO_000300: 5.816e1

QD
type: SiteQuality
SIO_000300: 1.463e1

FS
type: SiteQuality
SIO_000300: 6.545e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.400960384153662e-4
allele num: 8330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64040
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.607e0

DP
type: SiteQuality
SIO_000300: 1.664321e6

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 3.619e0

VQSLOD
type: SiteQuality
SIO_000300: 1.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.01e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11278
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63962
num of homozygotes: 0

Other
type: Population
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South Asian
type: Population
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allele frequency: 6.357279084551812e-5
allele num: 15730
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QD
type: SiteQuality
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DP
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
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Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.58202816010125e-5
allele num: 63210
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.45e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.242e0

FS
type: SiteQuality
SIO_000300: 1.5141e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.778e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e0

MQRankSum
type: SiteQuality
SIO_000300: -1.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e0

DP
type: SiteQuality
SIO_000300: 1.636363e6

GenotypeQuality
all individuals: 332
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.747286134759629e-5
allele num: 63194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11182
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.465e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.636295e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

VQSLOD
type: SiteQuality
SIO_000300: -3.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

MQ
type: SiteQuality
SIO_000300: 5.899e1

QD
type: SiteQuality
SIO_000300: 1.028e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.113533525298231e-4
allele num: 9724
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

FS
type: SiteQuality
SIO_000300: 2.892e0

MQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

QD
type: SiteQuality
SIO_000300: 1.437e1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.625468e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 38051
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.592103168285305e-5
allele num: 62810
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.039e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.29e-1

FS
type: SiteQuality
SIO_000300: 2.222e0

VQSLOD
type: SiteQuality
SIO_000300: -1.067e0

DP
type: SiteQuality
SIO_000300: 1.622276e6

MQRankSum
type: SiteQuality
SIO_000300: -1.688e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14760
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.242144177449168e-5
allele num: 10820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9414
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.433e0

MQ
type: SiteQuality
SIO_000300: 5.335e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.317e0

DP
type: SiteQuality
SIO_000300: 1.530242e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 9.42e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7604
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.242144177449168e-5
allele num: 10820
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9414
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.530242e6

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.433e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.5e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.335e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.652127940787734e-5
allele num: 60528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14742
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.81e-1

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.54e-1

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.288500835965076e-5
allele num: 10766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.24e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.0207e1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 1.510663e6

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.681067814275628e-5
allele num: 59486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14430
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6358
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.458298e6

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.97e-1

QD
type: SiteQuality
SIO_000300: 1.258e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 762
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GenotypeQuality
all individuals: 382
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variant carriers: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.367398917542184e-4
allele num: 6282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57722
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.932e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 3.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.51e0

DP
type: SiteQuality
SIO_000300: 1.318159e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

QD
type: SiteQuality
SIO_000300: 1.02e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.01e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.132759401903036e-4
allele num: 8828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

FS
type: SiteQuality
SIO_000300: 2.162e0

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.377e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.1e-3

QD
type: SiteQuality
SIO_000300: 1.242e1

DP
type: SiteQuality
SIO_000300: 1.192873e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.66e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.879911268188141e-5
allele num: 53194
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12778
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8472
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6070
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MQRankSum
type: SiteQuality
SIO_000300: -9.65e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.312e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.165e0

MQ
type: SiteQuality
SIO_000300: 5.866e1

VQSLOD
type: SiteQuality
SIO_000300: -1.285e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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European (Non-Finnish)
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allele count: 3
allele frequency: 5.686772567009137e-5
allele num: 52754
num of homozygotes: 0

African
type: Population
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allele num: 8364
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Latino
type: Population
allele count: 2
allele frequency: 2.063983488132095e-4
allele num: 9690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6096
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.287e0

DP
type: SiteQuality
SIO_000300: 1.132732e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

QD
type: SiteQuality
SIO_000300: 1.264e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6006
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8314
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South Asian
type: Population
allele count: 1
allele frequency: 7.964319847085059e-5
allele num: 12556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5984
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52254
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.131037e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.585e0

MQRankSum
type: SiteQuality
SIO_000300: 9.64e-1

QD
type: SiteQuality
SIO_000300: 8.48e0

VQSLOD
type: SiteQuality
SIO_000300: -5.073e-1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.916075876604713e-5
allele num: 52190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12550
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.27e-1

FS
type: SiteQuality
SIO_000300: 1.992e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.21e-1

DP
type: SiteQuality
SIO_000300: 1.130869e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 870
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Latino
type: Population
allele count: 1
allele frequency: 8.761170492377782e-5
allele num: 11414
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.173984503404555e-4
allele num: 8518
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6432
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 6.21e0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549522746993926e-5
allele num: 64536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11420
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.91e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64536
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8522
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Other
type: Population
allele count: 0
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allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.756567425569177e-5
allele num: 11420
num of homozygotes: 0

South Asian
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172882946281961e-4
allele num: 8526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64570
num of homozygotes: 0

South Asian
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InbreedingCoeff
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FS
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QD
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MQRankSum
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MQ
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BaseQRankSum
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DP
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.099e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0